Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010028 Camellia sinensis var. sinensis HOM05D000792 ORTHO05D004195 3.8e-81 304.7 145 100.0
CSS0043695 Camellia sinensis var. sinensis HOM05D000792 ORTHO05D004195 1.2e-21 107.1 284 31.0
CSS0027954 Camellia sinensis var. sinensis HOM05D000792 ORTHO05D004195 1.5e-21 106.7 284 31.0
Haze_04306 Corylus avellana HOM05D000792 ORTHO05D004195 3.8e-20 102.1 64 78.1
GSVIVG01021896001 Vitis vinifera HOM05D000792 ORTHO05D004195 3.8e-20 102.1 64 78.1
CSS0015984 Camellia sinensis var. sinensis HOM05D000792 ORTHO05D004195 4.9e-20 101.7 64 78.1
CSS0038276 Camellia sinensis var. sinensis HOM05D000792 ORTHO05D004195 4.9e-20 101.7 64 78.1
Glyma.19G241300 Glycine max HOM05D000792 ORTHO05D004195 4.9e-20 101.7 64 76.6
Glyma.19G241800 Glycine max HOM05D000792 ORTHO05D004195 4.9e-20 101.7 64 76.6
Potri.005G046500 Populus trichocarpa HOM05D000792 ORTHO05D004195 4.9e-20 101.7 64 76.6
VMungo0540G0969 Vigna mungo HOM05D000792 ORTHO05D004195 4.9e-20 101.7 64 76.6
VMungo0540G1958 Vigna mungo HOM05D000792 ORTHO05D004195 4.9e-20 101.7 64 76.6
QL03p000120 Quercus lobata HOM05D000792 ORTHO05D004195 6.5e-20 101.3 68 75.0
CiPaw.08G177700 Carya illinoinensis HOM05D000792 ORTHO05D004195 1.1e-19 100.5 64 76.6
Ca_09396_v3 Cicer arietinum L. HOM05D000792 ORTHO05D004195 1.1e-19 100.5 64 75.0
TAR636G2564 Trochodendron aralioides HOM05D000792 ORTHO05D004195 1.1e-19 100.5 64 73.4
MD04G1217000 Malus domestica HOM05D000792 ORTHO05D004195 1.4e-19 100.1 64 75.0
MD12G1233700 Malus domestica HOM05D000792 ORTHO05D004195 1.4e-19 100.1 64 75.0
ClCG02G016330 Citrullus lanatus HOM05D000792 ORTHO05D004195 1.9e-19 99.8 64 75.0
FAN14G0951 Fragaria x ananassa HOM05D000792 ORTHO05D004195 2.5e-19 99.4 65 73.8
Phvul.006G097800 Phaseolus vulgaris HOM05D000792 ORTHO05D004195 2.5e-19 99.4 64 75.0
Cc02_g31260 Coffea canephora HOM05D000792 ORTHO05D004195 3.2e-19 99.0 64 75.0
MELO3C004353.2 Cucumis melo HOM05D000792 ORTHO05D004195 3.2e-19 99.0 64 75.0
CsaV3_2G004410 Cucumis sativus L. HOM05D000792 ORTHO05D004195 3.2e-19 99.0 64 75.0
DCAR_029743 Daucus carota HOM05D000792 ORTHO05D004195 3.2e-19 99.0 64 75.0
FAN05G4969 Fragaria x ananassa HOM05D000792 ORTHO05D004195 3.2e-19 99.0 61 77.0
Glyma.03G243800 Glycine max HOM05D000792 ORTHO05D004195 3.2e-19 99.0 64 73.4
Nn3g21306 Nelumbo nucifera HOM05D000792 ORTHO05D004195 3.2e-19 99.0 64 76.6
Psat3g008760 Pisum sativum HOM05D000792 ORTHO05D004195 3.2e-19 99.0 64 73.4
Potri.013G033800 Populus trichocarpa HOM05D000792 ORTHO05D004195 3.2e-19 99.0 64 75.0
Prupe.6G336900 Prunus persica HOM05D000792 ORTHO05D004195 3.2e-19 99.0 64 73.4
Rhsim05G0148700 Rhododendron simsii HOM05D000792 ORTHO05D004195 3.2e-19 99.0 61 77.0
Sed0009127 Sechium edule HOM05D000792 ORTHO05D004195 3.2e-19 99.0 64 75.0
arahy.Tifrunner.gnm1.ann1.GRVM6J Arachis hypogaea HOM05D000792 ORTHO05D004195 4.2e-19 98.6 64 75.0
arahy.Tifrunner.gnm1.ann1.JA3EPN Arachis hypogaea HOM05D000792 ORTHO05D004195 4.2e-19 98.6 64 75.0
EL10Ac4g09219 Beta vulgaris HOM05D000792 ORTHO05D004195 4.2e-19 98.6 64 76.6
Glyma.03G244500 Glycine max HOM05D000792 ORTHO05D004195 4.2e-19 98.6 64 75.0
Phvul.006G098200 Phaseolus vulgaris HOM05D000792 ORTHO05D004195 4.2e-19 98.6 64 73.4
RcHm_v2.0_Chr3g0452571 Rosa chinensis HOM05D000792 ORTHO05D004195 4.2e-19 98.6 64 73.4
TPR.G7014 Trifolium pratense HOM05D000792 ORTHO05D004195 4.2e-19 98.6 64 73.4
Actinidia05754 Actinidia chinensis HOM05D000792 ORTHO05D004195 5.5e-19 98.2 64 73.4
arahy.Tifrunner.gnm1.ann1.GH6CGE Arachis hypogaea HOM05D000792 ORTHO05D004195 5.5e-19 98.2 61 77.0
CiPaw.07G009200 Carya illinoinensis HOM05D000792 ORTHO05D004195 5.5e-19 98.2 64 75.0
Glyma.10G159000 Glycine max HOM05D000792 ORTHO05D004195 5.5e-19 98.2 61 75.4
Manes.08G126500 Manihot esculenta HOM05D000792 ORTHO05D004195 5.5e-19 98.2 64 76.6
Sabra13G0033000 Salix brachista HOM05D000792 ORTHO05D004195 5.5e-19 98.2 61 75.4
COL.COLO4_13633 Corchorus olitorius HOM05D000792 ORTHO05D004195 7.1e-19 97.8 64 73.4
Gohir.D13G109000 Gossypium hirsutum HOM05D000792 ORTHO05D004195 7.1e-19 97.8 64 73.4
Gorai.013G122600 Gossypium raimondii HOM05D000792 ORTHO05D004195 7.1e-19 97.8 64 73.4
Thecc.05G291700 Theobroma cacao HOM05D000792 ORTHO05D004195 7.1e-19 97.8 64 73.4
Dinv03363 Davidia involucrata HOM05D000792 ORTHO05D004195 9.3e-19 97.4 64 73.4
FvH4_6g03981 Fragaria vesca HOM05D000792 ORTHO05D004195 9.3e-19 97.4 61 75.4
FAN02G1626 Fragaria x ananassa HOM05D000792 ORTHO05D004195 9.3e-19 97.4 61 75.4
FAN09G2107 Fragaria x ananassa HOM05D000792 ORTHO05D004195 9.3e-19 97.4 61 75.4
Lj7C479G6 Lonicera japonica HOM05D000792 ORTHO05D004195 9.3e-19 97.4 64 71.9
Manes.09G158100 Manihot esculenta HOM05D000792 ORTHO05D004195 9.3e-19 97.4 64 75.0
Nitab4.5_0000245g0030 Nicotiana tabacum HOM05D000792 ORTHO05D004195 9.3e-19 97.4 64 75.0
Peaxi162Scf00225g00310 Petunia axillaris HOM05D000792 ORTHO05D004195 9.3e-19 97.4 64 75.0
Sabra05G0042400 Salix brachista HOM05D000792 ORTHO05D004195 9.3e-19 97.4 64 73.4
TWI36G0731 Tripterygium wilfordii HOM05D000792 ORTHO05D004195 9.3e-19 97.4 64 73.4
Cpa.g.sc117.38 Carica papaya HOM05D000792 ORTHO05D004195 1.2e-18 97.1 64 75.0
Dinv17744 Davidia involucrata HOM05D000792 ORTHO05D004195 1.2e-18 97.1 68 69.1
Eucgr.H04403 Eucalyptus grandis HOM05D000792 ORTHO05D004195 1.2e-18 97.1 64 73.4
Lj5g0000884 Lotus japonicus HOM05D000792 ORTHO05D004195 1.2e-18 97.1 61 75.4
PGR004G0598 Punica granatum HOM05D000792 ORTHO05D004195 1.2e-18 97.1 64 73.4
Hund22093 Selenicereus undatus HOM05D000792 ORTHO05D004195 1.2e-18 97.1 64 73.4
TAR365G0075 Trochodendron aralioides HOM05D000792 ORTHO05D004195 1.2e-18 97.1 64 71.9
Atru.chr2.653 Acer truncatum HOM05D000792 ORTHO05D004195 1.6e-18 96.7 64 73.4
FAN05G0287 Fragaria x ananassa HOM05D000792 ORTHO05D004195 1.6e-18 96.7 61 75.4
vmacro19669 Vaccinium macrocarpon HOM05D000792 ORTHO05D004195 1.6e-18 96.7 61 77.0
Ah.06g192810 Amaranthus hybridus HOM05D000792 ORTHO05D004195 2.1e-18 96.3 64 73.4
Ciclev10000367m.g Citrus clementina HOM05D000792 ORTHO05D004195 2.1e-18 96.3 64 73.4
Gohir.A13G171400 Gossypium hirsutum HOM05D000792 ORTHO05D004195 2.1e-18 96.3 64 71.9
Nitab4.5_0006443g0030 Nicotiana tabacum HOM05D000792 ORTHO05D004195 2.7e-18 95.9 64 73.4
Peaxi162Scf00071g00939 Petunia axillaris HOM05D000792 ORTHO05D004195 2.7e-18 95.9 64 73.4
Sed0026552 Sechium edule HOM05D000792 ORTHO05D004195 2.7e-18 95.9 64 73.4
Nitab4.5_0000087g0250 Nicotiana tabacum HOM05D000792 ORTHO05D004195 3.5e-18 95.5 64 71.9
SalBow5G1543 Salvia bowleyana HOM05D000792 ORTHO05D004195 3.5e-18 95.5 64 71.9
AUR62005021 Chenopodium quinoa HOM05D000792 ORTHO05D004195 4.6e-18 95.1 64 73.4
Gohir.D13G176800 Gossypium hirsutum HOM05D000792 ORTHO05D004195 4.6e-18 95.1 64 70.3
Gorai.013G202200 Gossypium raimondii HOM05D000792 ORTHO05D004195 4.6e-18 95.1 64 70.3
Duzib106G0823 Durio zibethinus HOM05D000792 ORTHO05D004195 6.0e-18 94.7 64 70.3
Duzib177G0519 Durio zibethinus HOM05D000792 ORTHO05D004195 6.0e-18 94.7 64 70.3
Duzib128G1364 Durio zibethinus HOM05D000792 ORTHO05D004195 7.9e-18 94.4 64 70.3
SHI18278 Sapria himalayana HOM05D000792 ORTHO05D004195 7.9e-18 94.4 64 71.9
Sc09g0003670 Simmondsia chinensis HOM05D000792 ORTHO05D004195 7.9e-18 94.4 64 73.4
SGA_v2.0_scaffold15G07272 Striga asiatica HOM05D000792 ORTHO05D004195 7.9e-18 94.4 68 67.6
Lj1g0010529 Lotus japonicus HOM05D000792 ORTHO05D004195 1.0e-17 94.0 64 71.9
Migut.K00761 Erythranthe guttata HOM05D000792 ORTHO05D004195 1.8e-17 93.2 64 68.8
Lj9A672G81 Lonicera japonica HOM05D000792 ORTHO05D004195 1.8e-17 93.2 64 70.3
Lalb_Chr15g0076961 Lupinus albus HOM05D000792 ORTHO05D004195 1.8e-17 93.2 64 71.9
Solyc01g098090.3 Solanum lycopersicum HOM05D000792 ORTHO05D004195 1.8e-17 93.2 64 70.3
Sopen01g041660 Solanum pennellii HOM05D000792 ORTHO05D004195 1.8e-17 93.2 64 70.3
Ca_10069_v3 Cicer arietinum L. HOM05D000792 ORTHO05D004195 3.0e-17 92.4 64 68.8
Oeu004838.1 Olea europaea HOM05D000792 ORTHO05D004195 3.0e-17 92.4 64 68.8
TWI12G0870 Tripterygium wilfordii HOM05D000792 ORTHO05D004195 3.0e-17 92.4 64 68.8
Gohir.A11G257200 Gossypium hirsutum HOM05D000792 ORTHO05D004195 5.1e-17 91.7 64 67.2
AL3G15470 Arabidopsis lyrata HOM05D000792 ORTHO05D004195 6.7e-17 91.3 64 67.2
AT3G05090 Arabidopsis thaliana HOM05D000792 ORTHO05D004195 6.7e-17 91.3 64 67.2
BcaC05g29993 Brassica carinata HOM05D000792 ORTHO05D004195 6.7e-17 91.3 64 67.2
A05p42490 Brassica napus HOM05D000792 ORTHO05D004195 6.7e-17 91.3 64 67.2
BraA05t23003Z Brassica rapa HOM05D000792 ORTHO05D004195 6.7e-17 91.3 64 67.2
Carub.0003s0433 Capsella rubella HOM05D000792 ORTHO05D004195 6.7e-17 91.3 64 67.2
Medtr7g114370 Medicago truncatula HOM05D000792 ORTHO05D004195 6.7e-17 91.3 64 67.2
Thhalv10020130m.g Eutrema salsugineum HOM05D000792 ORTHO05D004195 8.7e-17 90.9 64 67.2
Gohir.D08G230900 Gossypium hirsutum HOM05D000792 ORTHO05D004195 8.7e-17 90.9 64 68.8
Gorai.004G245300 Gossypium raimondii HOM05D000792 ORTHO05D004195 8.7e-17 90.9 64 68.8
Sp3g03910 Schrenkiella parvula HOM05D000792 ORTHO05D004195 8.7e-17 90.9 64 67.2
Lalb_Chr18g0045241 Lupinus albus HOM05D000792 ORTHO05D004195 1.1e-16 90.5 64 68.8
Aa31LG5G15360 Aethionema arabicum HOM05D000792 ORTHO05D004195 1.5e-16 90.1 64 67.2
C05p62150 Brassica napus HOM05D000792 ORTHO05D004195 1.5e-16 90.1 61 68.9
BolC5t34873H Brassica oleracea HOM05D000792 ORTHO05D004195 1.5e-16 90.1 61 68.9
Gohir.D11G267100 Gossypium hirsutum HOM05D000792 ORTHO05D004195 1.5e-16 90.1 64 65.6
Gorai.007G286900 Gossypium raimondii HOM05D000792 ORTHO05D004195 1.5e-16 90.1 64 65.6
BcaC01g04335 Brassica carinata HOM05D000792 ORTHO05D004195 1.9e-16 89.7 61 68.9
A03p33980 Brassica napus HOM05D000792 ORTHO05D004195 1.9e-16 89.7 61 68.9
C03p41360 Brassica napus HOM05D000792 ORTHO05D004195 1.9e-16 89.7 61 68.9
BolC3t16419H Brassica oleracea HOM05D000792 ORTHO05D004195 1.9e-16 89.7 61 68.9
BraA03t12573Z Brassica rapa HOM05D000792 ORTHO05D004195 1.9e-16 89.7 61 68.9
CARHR079410 Cardamine hirsuta HOM05D000792 ORTHO05D004195 1.9e-16 89.7 64 67.2
Lsat_1_v5_gn_2_6701 Lactuca sativa HOM05D000792 ORTHO05D004195 1.9e-16 89.7 64 70.3
Medtr1g081830 Medicago truncatula HOM05D000792 ORTHO05D004195 1.9e-16 89.7 64 65.6
ECA233G2068 Erigeron canadensis HOM05D000792 ORTHO05D004195 2.5e-16 89.4 64 68.8
Gohir.A08G213900 Gossypium hirsutum HOM05D000792 ORTHO05D004195 2.5e-16 89.4 64 67.2
Psat0s4348g0040 Pisum sativum HOM05D000792 ORTHO05D004195 2.5e-16 89.4 64 65.6
Sp2g20380 Schrenkiella parvula HOM05D000792 ORTHO05D004195 2.5e-16 89.4 64 65.6
Sopen08g008890 Solanum pennellii HOM05D000792 ORTHO05D004195 2.5e-16 89.4 64 68.8
HanXRQChr14g0429451 Helianthus annuus HOM05D000792 ORTHO05D004195 4.3e-16 88.6 64 70.3
THA.LOC104821692 Tarenaya hassleriana HOM05D000792 ORTHO05D004195 4.3e-16 88.6 64 64.1
MSTRG.3420 Avicennia marina HOM05D000792 ORTHO05D004195 5.7e-16 88.2 64 68.8
BcaB04g19281 Brassica carinata HOM05D000792 ORTHO05D004195 5.7e-16 88.2 64 65.6
THA.LOC104818655 Tarenaya hassleriana HOM05D000792 ORTHO05D004195 5.7e-16 88.2 64 64.1
HanXRQChr12g0366721 Helianthus annuus HOM05D000792 ORTHO05D004195 7.4e-16 87.8 64 67.2
HanXRQChr16g0498011 Helianthus annuus HOM05D000792 ORTHO05D004195 7.4e-16 87.8 64 65.6
Lsat_1_v5_gn_0_840 Lactuca sativa HOM05D000792 ORTHO05D004195 7.4e-16 87.8 64 67.2
Lsat_1_v5_gn_8_29340 Lactuca sativa HOM05D000792 ORTHO05D004195 7.4e-16 87.8 64 65.6
MBI18_g25810_MAGBIO Magnolia biondii HOM05D000792 ORTHO05D004195 1.6e-15 86.7 64 67.2
Oeu003790.1 Olea europaea HOM05D000792 ORTHO05D004195 2.2e-15 86.3 64 64.1
HPP92_016897 Vanilla planifolia HOM05D000792 ORTHO05D004195 2.2e-15 86.3 64 67.2
PSO170G0948 Papaver somniferum HOM05D000792 ORTHO05D004195 4.8e-15 85.1 64 64.1
SEGI_34645 Sequoiadendron giganteum HOM05D000792 ORTHO05D004195 4.8e-15 85.1 64 62.5
ATR0772G088 Amborella trichopoda HOM05D000792 ORTHO05D004195 6.3e-15 84.7 61 67.2
Gohir.A13G106300 Gossypium hirsutum HOM05D000792 ORTHO05D004195 6.3e-15 84.7 45 84.4
Aqoxy2G03096 Aquilegia oxysepala HOM05D000792 ORTHO05D004195 8.2e-15 84.3 64 64.1
CDE02G3582 Ceratophyllum demersum HOM05D000792 ORTHO05D004195 3.1e-14 82.4 64 62.5
MBI19_g08863_MAGBIO Magnolia biondii HOM05D000792 ORTHO05D004195 3.1e-14 82.4 64 64.1
VMungo0720G0333 Vigna mungo HOM05D000792 ORTHO05D004195 5.3e-14 81.6 61 62.3
CDE09G0368 Ceratophyllum demersum HOM05D000792 ORTHO05D004195 1.2e-13 80.5 64 62.5
SMO367G0211 Selaginella moellendorffii HOM05D000792 ORTHO05D004195 3.4e-13 79.0 64 56.2
Pp3c14_23300 Physcomitrium patens HOM05D000792 ORTHO05D004195 7.7e-13 77.8 64 56.2
Os12g0165000 Oryza sativa ssp. japonica HOM05D000792 ORTHO05D004195 1.0e-12 77.4 61 59.0
Zm00001eb407650 Zea mays HOM05D000792 ORTHO05D004195 1.0e-12 77.4 61 59.0
Zm00001eb139400 Zea mays HOM05D000792 ORTHO05D004195 1.3e-12 77.0 61 59.0
Pp3c1_36050 Physcomitrium patens HOM05D000792 ORTHO05D004195 1.7e-12 76.6 64 54.7
Solyc08g023580.4 Solanum lycopersicum HOM05D000792 ORTHO05D004195 5.0e-12 75.1 46 73.9
VMungo0251G2782 Vigna mungo HOM05D000792 ORTHO05D004195 1.4e-11 73.6 67 55.2
AagrBONN_evm.TU.Sc2ySwM_369.430 Anthoceros agrestis HOM05D000792 ORTHO05D004195 1.9e-11 73.2 68 50.0
Pp3c2_9310 Physcomitrium patens HOM05D000792 ORTHO05D004195 2.5e-11 72.8 64 51.6
Phvul.007G184400 Phaseolus vulgaris HOM05D000792 ORTHO05D004195 4.2e-11 72.0 64 56.2
Mapoly0016s0038 Marchantia polymorpha HOM05D000792 ORTHO05D004195 9.4e-11 70.9 61 50.8
CBR_g51918 Chara braunii HOM05D000792 ORTHO05D004195 2.3e-09 66.2 61 50.8
CAN.G97.24 Capsicum annuum HOM05D002023 ORTHO05D002049 9.7e-08 60.8 38 73.7
vmacro19668 Vaccinium macrocarpon HOM05D000792 ORTHO05D004195 1.7e-07 60.1 70 48.6


User provided reference genes

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