Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009997 Camellia sinensis var. sinensis HOM05D006507 ORTHO05D007296 0.0e+00 2362.8 1220 100.0
Actinidia24071 Actinidia chinensis HOM05D006507 ORTHO05D007296 1.2e-239 834.3 1332 43.7
Rhsim13G0091300 Rhododendron simsii HOM05D006507 ORTHO05D007296 4.3e-234 815.8 1305 46.1
vmacro03160 Vaccinium macrocarpon HOM05D006507 ORTHO05D007296 8.3e-153 545.8 820 44.9
TAR633G2802 Trochodendron aralioides HOM05D006507 ORTHO05D007296 4.3e-133 480.3 1282 34.6
Atru.chr3.3722 Acer truncatum HOM05D006507 ORTHO05D007296 7.9e-103 379.8 1385 30.3
Atru.chr3.3727 Acer truncatum HOM05D006507 ORTHO05D007296 2.2e-97 361.7 1568 28.5
Cfa011382 Carpinus fangiana HOM05D006507 ORTHO05D007296 2.6e-93 348.2 1401 29.4
Duzib170G0831 Durio zibethinus HOM05D006507 ORTHO05D007296 9.1e-91 339.7 1432 29.8
Gohir.D07G120101 Gossypium hirsutum HOM05D006507 ORTHO05D007296 5.9e-90 337.0 1407 29.4
CiPaw.13G105600 Carya illinoinensis HOM05D006507 ORTHO05D007296 1.9e-88 332.0 843 35.6
Gorai.001G129300 Gossypium raimondii HOM05D006507 ORTHO05D007296 1.6e-87 328.9 1408 29.5
Haze_23947 Corylus avellana HOM05D006507 ORTHO05D007296 8.0e-87 326.6 1588 27.9
QL01p036413 Quercus lobata HOM05D006507 ORTHO05D007296 6.7e-86 323.6 848 35.1
Manes.11G139900 Manihot esculenta HOM05D006507 ORTHO05D007296 3.7e-84 317.8 1529 28.8
COL.COLO4_25271 Corchorus olitorius HOM05D006507 ORTHO05D007296 1.5e-80 305.8 1422 29.3
Thecc.09G262500 Theobroma cacao HOM05D006507 ORTHO05D007296 2.1e-79 302.0 1498 28.2
PGR102G3212 Punica granatum HOM05D006507 ORTHO05D007296 1.4e-78 299.3 1343 28.4
Nitab4.5_0000270g0010 Nicotiana tabacum HOM05D006507 ORTHO05D007296 8.3e-76 290.0 1359 28.0
FAN11G1966 Fragaria x ananassa HOM05D006507 ORTHO05D007296 1.1e-75 289.7 1382 29.5
DCAR_006032 Daucus carota HOM05D006507 ORTHO05D007296 1.8e-75 288.9 1243 28.9
Gohir.A07G115600 Gossypium hirsutum HOM05D006507 ORTHO05D007296 1.3e-73 282.7 1295 28.9
TWI79G0725 Tripterygium wilfordii HOM05D006507 ORTHO05D007296 8.5e-73 280.0 1354 28.2
CANSAT54G2524 Cannabis sativa HOM05D006507 ORTHO05D007296 5.7e-69 267.3 1489 26.5
FAN16G3496 Fragaria x ananassa HOM05D006507 ORTHO05D007296 4.8e-68 264.2 1367 28.2
AL8G36760 Arabidopsis lyrata HOM05D006507 ORTHO05D007296 2.5e-64 251.9 1322 27.4
Lj2A1039T65 Lonicera japonica HOM05D006507 ORTHO05D007296 4.7e-63 247.7 968 31.0
THA.LOC104810833 Tarenaya hassleriana HOM05D006507 ORTHO05D007296 8.0e-63 246.9 1343 27.0
Sc21g0000130 Simmondsia chinensis HOM05D006507 ORTHO05D007296 1.8e-62 245.7 1372 27.8
Sopen06g031820 Solanum pennellii HOM05D006507 ORTHO05D007296 6.8e-62 243.8 1259 27.1
ClCG02G020740 Citrullus lanatus HOM05D006507 ORTHO05D007296 1.2e-61 243.0 1430 27.1
FvH4_3g33790 Fragaria vesca HOM05D006507 ORTHO05D007296 3.7e-60 238.0 755 32.2
Nitab4.5_0001698g0050 Nicotiana tabacum HOM05D006507 ORTHO05D007296 6.3e-60 237.3 1367 27.1
Aqoxy2G01879 Aquilegia oxysepala HOM05D006507 ORTHO05D007296 4.5e-58 231.1 1245 26.8
Potri.005G131500 Populus trichocarpa HOM05D006507 ORTHO05D007296 6.6e-57 227.3 1381 25.3
MELO3C025723.2 Cucumis melo HOM05D006507 ORTHO05D007296 4.7e-55 221.1 1457 25.7
A10p17300 Brassica napus HOM05D006507 ORTHO05D007296 1.5e-53 216.1 1328 26.1
CARHR273800 Cardamine hirsuta HOM05D006507 ORTHO05D007296 3.4e-53 214.9 1360 25.8
CsaV3_6G021880 Cucumis sativus L. HOM05D006507 ORTHO05D007296 4.4e-53 214.5 1378 25.8
PGSC0003DMG400007499 Solanum tuberosum HOM05D006507 ORTHO05D007296 7.5e-53 213.8 1356 24.7
SalBow3G2105 Salvia bowleyana HOM05D006507 ORTHO05D007296 9.8e-53 213.4 1177 26.4
Carub.0008s2088 Capsella rubella HOM05D006507 ORTHO05D007296 1.3e-52 213.0 1326 26.9
Sp6g21800 Schrenkiella parvula HOM05D006507 ORTHO05D007296 4.9e-52 211.1 1341 25.5
vmacro03159 Vaccinium macrocarpon HOM05D006507 ORTHO05D007296 4.1e-51 208.0 168 65.5
MSTRG.12615 Avicennia marina HOM05D006507 ORTHO05D007296 4.6e-50 204.5 1188 25.5
Prupe.6G092200 Prunus persica HOM05D006507 ORTHO05D007296 1.0e-49 203.4 838 29.7
Sed0026220 Sechium edule HOM05D006507 ORTHO05D007296 1.9e-48 199.1 1366 25.3
AT5G60150 Arabidopsis thaliana HOM05D006507 ORTHO05D007296 7.3e-48 197.2 1332 25.8
BraA10t43814Z Brassica rapa HOM05D006507 ORTHO05D007296 4.7e-47 194.5 1309 26.1
Sabra05G0106900 Salix brachista HOM05D006507 ORTHO05D007296 1.8e-46 192.6 1389 24.7
Lsat_1_v5_gn_2_25380 Lactuca sativa HOM05D006507 ORTHO05D007296 4.0e-46 191.4 1226 25.4
Oeu022272.1 Olea europaea HOM05D006507 ORTHO05D007296 6.8e-46 190.7 1243 25.9
Thhalv10012478m.g Eutrema salsugineum HOM05D006507 ORTHO05D007296 1.2e-45 189.9 1284 26.2
Nn2g12985 Nelumbo nucifera HOM05D006507 ORTHO05D007296 1.2e-45 189.9 860 29.0
C09p52640 Brassica napus HOM05D006507 ORTHO05D007296 2.6e-45 188.7 1321 26.6
Dinv32808 Davidia involucrata HOM05D006507 ORTHO05D007296 4.9e-44 184.5 186 55.9
SGA_v2.0_scaffold80G25739 Striga asiatica HOM05D006507 ORTHO05D007296 2.4e-43 182.2 1225 24.8
FAN21G2403 Fragaria x ananassa HOM05D006507 ORTHO05D007296 4.1e-43 181.4 835 29.1
BolC9t58131H Brassica oleracea HOM05D006507 ORTHO05D007296 9.2e-43 180.3 1323 26.4
arahy.Tifrunner.gnm1.ann1.M2HQ4Q Arachis hypogaea HOM05D006507 ORTHO05D007296 7.8e-42 177.2 1393 24.5
GSVIVG01025113001 Vitis vinifera HOM05D038408 ORTHO05D007296 3.9e-41 174.9 1252 25.7
arahy.Tifrunner.gnm1.ann1.NP2AMW Arachis hypogaea HOM05D006507 ORTHO05D007296 1.1e-40 173.3 1387 24.2
CANSAT54G0008 Cannabis sativa HOM05D006507 ORTHO05D007296 1.9e-40 172.6 674 31.8
TPR.G2995 Trifolium pratense HOM05D006507 ORTHO05D007296 1.1e-38 166.8 1548 23.4
Ca_19235_v3 Cicer arietinum L. HOM05D006507 ORTHO05D007296 1.2e-37 163.3 1352 23.4
PSO384G3963 Papaver somniferum HOM05D006507 ORTHO05D007296 2.0e-37 162.5 596 30.9
Aa31LG1G12330 Aethionema arabicum HOM05D006507 ORTHO05D007296 2.9e-36 158.7 531 33.7
Medtr4g061110 Medicago truncatula HOM05D006507 ORTHO05D007296 4.9e-36 157.9 1597 24.0
RcHm_v2.0_Chr5g0061361 Rosa chinensis HOM05D006507 ORTHO05D007296 1.6e-34 152.9 1053 27.1
EL10Ac9g22402 Beta vulgaris HOM05D006507 ORTHO05D007296 7.8e-34 150.6 1135 23.3
Ciclev10027733m.g Citrus clementina HOM05D006507 ORTHO05D007296 8.6e-33 147.1 1030 24.9
Glyma.11G150661 Glycine max HOM05D006507 ORTHO05D007296 1.9e-32 146.0 601 29.1
Glyma.12G072900 Glycine max HOM05D006507 ORTHO05D007296 1.6e-31 142.9 601 28.5
Cc01_g11720 Coffea canephora HOM05D006507 ORTHO05D007296 1.8e-30 139.4 1267 24.0
RcHm_v2.0_Chr5g0061351 Rosa chinensis HOM05D006507 ORTHO05D007296 6.8e-30 137.5 240 43.3
Cpa.g.sc139.58 Carica papaya HOM05D006507 ORTHO05D007296 1.5e-29 136.3 255 41.6
ECA238G2561 Erigeron canadensis HOM05D006507 ORTHO05D007296 4.4e-29 134.8 121 57.0
Lalb_Chr19g0137501 Lupinus albus HOM05D006507 ORTHO05D007296 4.4e-29 134.8 122 53.3
CAN.G1001.2 Capsicum annuum HOM05D006507 ORTHO05D007296 5.8e-29 134.4 1132 23.6
Solyc06g075420.1 Solanum lycopersicum HOM05D006507 ORTHO05D007296 1.7e-28 132.9 1050 24.5
Migut.N02633 Erythranthe guttata HOM05D006507 ORTHO05D007296 1.9e-27 129.4 1037 24.0
PSO339G6510 Papaver somniferum HOM05D006507 ORTHO05D007296 1.9e-27 129.4 667 26.7
Lj3g0018374 Lotus japonicus HOM05D006507 ORTHO05D007296 2.1e-26 125.9 789 26.5
HanXRQChr06g0183281 Helianthus annuus HOM05D006507 ORTHO05D007296 3.5e-26 125.2 107 57.0
Actinidia08403 Actinidia chinensis HOM05D006507 ORTHO05D007296 7.8e-26 124.0 69 84.1
Cpa.g.sc139.57 Carica papaya HOM05D006507 ORTHO05D007296 5.1e-25 121.3 172 45.9
Hma1.2p1_2156F.1_g315450 Hydrangea macrophylla HOM05D006507 ORTHO05D007296 6.6e-25 120.9 96 63.5
CAN.G1001.3 Capsicum annuum HOM05D006507 ORTHO05D007296 4.3e-24 118.2 237 38.0
VMungo1127G1622 Vigna mungo HOM05D006507 ORTHO05D007296 9.6e-24 117.1 109 54.1
HanXRQChr06g0183291 Helianthus annuus HOM05D006507 ORTHO05D007296 1.3e-23 116.7 172 42.4
Solyc06g075410.4 Solanum lycopersicum HOM05D006507 ORTHO05D007296 1.6e-23 116.3 172 45.3
MD03G1109500 Malus domestica HOM05D006507 ORTHO05D007296 2.1e-23 115.9 533 27.4
Sopen02g037950 Solanum pennellii HOM05D000002 ORTHO05D000001 1.1e-22 113.6 176 44.3
AUR62006495 Chenopodium quinoa HOM05D006507 ORTHO05D007296 1.5e-21 109.8 1020 23.1
SEGI_16529 Sequoiadendron giganteum HOM05D006507 ORTHO05D007296 7.6e-21 107.5 68 67.6
HPP92_015411 Vanilla planifolia HOM05D006507 ORTHO05D007296 8.4e-20 104.0 151 39.7
HPP92_026984 Vanilla planifolia HOM05D006507 ORTHO05D007296 5.4e-19 101.3 256 31.6
AUR62025040 Chenopodium quinoa HOM05D006507 ORTHO05D007296 2.7e-18 99.0 870 22.5
Psat7g223080 Pisum sativum HOM05D006507 ORTHO05D007296 4.6e-18 98.2 327 29.4
MD03G1109700 Malus domestica HOM05D006507 ORTHO05D007296 3.9e-17 95.1 136 46.3
Os12g0102700 Oryza sativa ssp. japonica HOM05D006507 ORTHO05D007296 7.3e-16 90.9 319 27.9
ATR1159G075 Amborella trichopoda HOM05D006507 ORTHO05D007296 9.6e-16 90.5 556 25.9
Actinidia07103 Actinidia chinensis HOM05D006507 ORTHO05D007296 1.8e-14 86.3 70 61.4
Migut.N02632 Erythranthe guttata HOM05D006507 ORTHO05D007296 1.5e-13 83.2 111 46.8
AagrBONN_evm.TU.Sc2ySwM_368.2680 Anthoceros agrestis HOM05D006507 ORTHO05D007296 2.6e-13 82.4 57 63.2
Lalb_Chr19g0137491 Lupinus albus HOM05D006507 ORTHO05D007296 3.4e-13 82.0 244 37.3
Hma1.2p1_0840F.1_g226520 Hydrangea macrophylla HOM05D006507 ORTHO05D007296 4.5e-13 81.6 63 63.5
CDE04G2211 Ceratophyllum demersum HOM05D034970 ORTHO05D007296 9.9e-13 80.5 179 38.0
Pp3c16_7200 Physcomitrium patens HOM05D034648 ORTHO05D007296 1.7e-12 79.7 63 55.6
Peaxi162Scf00072g00227 Petunia axillaris HOM05D006507 ORTHO05D007296 6.4e-12 77.8 117 46.2
Sopen02g037960 Solanum pennellii HOM05D006507 ORTHO05D007296 1.6e-10 73.2 91 50.5
Sc24g0004230 Simmondsia chinensis HOM05D009348 ORTHO05D010856 6.0e-10 71.2 65 58.5
Hma1.2p1_0660F.1_g197490 Hydrangea macrophylla HOM05D006507 ORTHO05D007296 7.9e-10 70.9 82 50.0
Mapoly0001s0188 Marchantia polymorpha HOM05D006507 ORTHO05D007296 1.8e-09 69.7 58 58.6
CDE12G0493 Ceratophyllum demersum HOM05D034970 ORTHO05D007296 3.0e-09 68.9 234 32.1
GSVIVG01032692001 Vitis vinifera HOM05D038408 ORTHO05D007296 3.9e-09 68.6 223 32.3
Actinidia08383 Actinidia chinensis HOM05D006507 ORTHO05D007296 1.1e-08 67.0 72 52.8
GSVIVG01033147001 Vitis vinifera HOM05D038408 ORTHO05D007296 1.6e-07 63.2 236 30.5
Psat7g223120 Pisum sativum HOM05D006507 ORTHO05D007296 2.1e-07 62.8 273 31.9
Os05g0121800 Oryza sativa ssp. japonica HOM05D003265 ORTHO05D003819 2.8e-07 62.4 301 27.6
Gohir.A01G217200 Gossypium hirsutum HOM05D003265 ORTHO05D003819 4.8e-07 61.6 153 32.0
Gorai.002G250300 Gossypium raimondii HOM05D003265 ORTHO05D003819 4.8e-07 61.6 153 31.4
Phvul.004G075600 Phaseolus vulgaris HOM05D003265 ORTHO05D003819 6.2e-07 61.2 74 44.6
BcaB01g00290 Brassica carinata HOM05D003265 ORTHO05D003819 1.1e-06 60.5 309 31.1
CARHR163240 Cardamine hirsuta HOM05D003265 ORTHO05D003819 2.4e-06 59.3 59 50.8
Peaxi162Scf00072g00226 Petunia axillaris HOM05D006507 ORTHO05D007296 3.1e-06 58.9 1023 21.6
Sed0014651 Sechium edule HOM05D003265 ORTHO05D003819 5.3e-06 58.2 408 25.0
Atru.chr8.2556 Acer truncatum HOM05D003265 ORTHO05D003819 9.0e-06 57.4 71 50.7
BcaC07g39697 Brassica carinata HOM05D003265 ORTHO05D003819 9.0e-06 57.4 336 30.4
BolC8t50462H Brassica oleracea HOM05D003265 ORTHO05D003819 9.0e-06 57.4 336 30.4


User provided reference genes

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