Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009961 Camellia sinensis var. sinensis HOM05D008067 ORTHO05D010226 6.4e-38 160.2 79 100.0
CSS0037112 Camellia sinensis var. sinensis HOM05D008067 ORTHO05D010226 6.4e-38 160.2 79 100.0
Cfa003263 Carpinus fangiana HOM05D008067 ORTHO05D010226 6.6e-19 97.1 84 64.3
PGSC0003DMG400000315 Solanum tuberosum HOM05D008067 ORTHO05D010226 1.1e-18 96.3 87 64.4
COL.COLO4_34910 Corchorus olitorius HOM05D008067 ORTHO05D010226 3.3e-18 94.7 88 64.8
Thecc.09G111500 Theobroma cacao HOM05D008067 ORTHO05D010226 3.3e-18 94.7 84 66.7
TAR624G0725 Trochodendron aralioides HOM05D008067 ORTHO05D010226 3.3e-18 94.7 84 64.3
QL02p085507 Quercus lobata HOM05D008067 ORTHO05D010226 5.6e-18 94.0 75 62.7
Haze_25708 Corylus avellana HOM05D008067 ORTHO05D010226 1.3e-17 92.8 84 61.9
CiPaw.04G164800 Carya illinoinensis HOM05D008067 ORTHO05D010226 6.2e-17 90.5 85 62.4
Peaxi162Scf00560g00114 Petunia axillaris HOM05D008067 ORTHO05D010226 1.4e-16 89.4 91 56.0
Gohir.A07G006600 Gossypium hirsutum HOM05D008067 ORTHO05D010226 1.8e-16 89.0 89 65.2
Gohir.D07G005400 Gossypium hirsutum HOM05D008067 ORTHO05D010226 1.8e-16 89.0 89 65.2
Gorai.001G004900 Gossypium raimondii HOM05D008067 ORTHO05D010226 1.8e-16 89.0 89 65.2
Sopen12g003050 Solanum pennellii HOM05D008067 ORTHO05D010226 1.8e-16 89.0 90 58.9
Potri.018G079200 Populus trichocarpa HOM05D008067 ORTHO05D010226 3.1e-16 88.2 79 64.6
ClCG11G002490 Citrullus lanatus HOM05D008067 ORTHO05D010226 4.0e-16 87.8 79 60.8
Gohir.D06G060201 Gossypium hirsutum HOM05D008067 ORTHO05D010226 4.0e-16 87.8 83 65.1
Nitab4.5_0003537g0010 Nicotiana tabacum HOM05D008067 ORTHO05D010226 4.0e-16 87.8 87 59.8
Manes.03G019700 Manihot esculenta HOM05D008067 ORTHO05D010226 5.3e-16 87.4 87 65.5
CsaV3_2G002290 Cucumis sativus L. HOM05D008067 ORTHO05D010226 1.2e-15 86.3 86 59.3
Solyc12g007060.1 Solanum lycopersicum HOM05D008067 ORTHO05D010226 1.5e-15 85.9 98 54.1
MD02G1048100 Malus domestica HOM05D008067 ORTHO05D010226 3.4e-15 84.7 79 58.2
MELO3C004555.2 Cucumis melo HOM05D008067 ORTHO05D010226 5.8e-15 84.0 79 59.5
Lsat_1_v5_gn_8_95580 Lactuca sativa HOM05D008067 ORTHO05D010226 5.8e-15 84.0 102 52.9
Prupe.7G230000 Prunus persica HOM05D008067 ORTHO05D010226 5.8e-15 84.0 84 61.9
Sed0011788 Sechium edule HOM05D008067 ORTHO05D010226 7.6e-15 83.6 80 57.5
Sed0012648 Sechium edule HOM05D008067 ORTHO05D010226 9.9e-15 83.2 79 58.2
Gorai.010G070100 Gossypium raimondii HOM05D008067 ORTHO05D010226 2.2e-14 82.0 83 63.9
Aqoxy7G01692 Aquilegia oxysepala HOM05D008067 ORTHO05D010226 3.2e-13 78.2 88 53.4
Atru.chr7.1341 Acer truncatum HOM05D008067 ORTHO05D010226 4.2e-13 77.8 84 58.3
Gohir.A06G061900 Gossypium hirsutum HOM05D008067 ORTHO05D010226 4.2e-13 77.8 83 59.0
RhsimUnG0085400 Rhododendron simsii HOM05D008067 ORTHO05D010226 4.2e-13 77.8 81 55.6
Ciclev10010044m.g Citrus clementina HOM05D008067 ORTHO05D010226 5.4e-13 77.4 91 59.3
Nn2g11761 Nelumbo nucifera HOM05D008067 ORTHO05D010226 9.3e-13 76.6 65 58.5
FAN23G0784 Fragaria x ananassa HOM05D008067 ORTHO05D010226 2.1e-12 75.5 75 62.7
FvH4_1g04950 Fragaria vesca HOM05D008067 ORTHO05D010226 2.7e-12 75.1 75 62.7
CsaV3_1G030530 Cucumis sativus L. HOM05D008067 ORTHO05D010226 3.5e-12 74.7 84 50.0
Nn8g39208 Nelumbo nucifera HOM05D008067 ORTHO05D010226 3.5e-12 74.7 86 51.2
RcHm_v2.0_Chr2g0090561 Rosa chinensis HOM05D008067 ORTHO05D010226 3.5e-12 74.7 75 58.7
DCAR_028716 Daucus carota HOM05D008067 ORTHO05D010226 6.0e-12 73.9 64 62.5
FAN28G1234 Fragaria x ananassa HOM05D008067 ORTHO05D010226 7.9e-12 73.6 77 57.1
Peaxi162Scf00546g00115 Petunia axillaris HOM05D008067 ORTHO05D010226 1.3e-11 72.8 62 64.5
EL10Ac8g18505 Beta vulgaris HOM05D008067 ORTHO05D010226 3.0e-11 71.6 85 54.1
Lalb_Chr05g0222841 Lupinus albus HOM05D008067 ORTHO05D010226 3.0e-11 71.6 68 54.4
HPP92_010803 Vanilla planifolia HOM05D008067 ORTHO05D010226 3.0e-11 71.6 75 50.7
Glyma.08G039000 Glycine max HOM05D008067 ORTHO05D010226 3.9e-11 71.2 60 65.0
Lj2g0025160 Lotus japonicus HOM05D008067 ORTHO05D010226 1.1e-10 69.7 51 62.7
Medtr8g083450 Medicago truncatula HOM05D008067 ORTHO05D010226 1.5e-10 69.3 73 53.4
Lj2g0006280 Lotus japonicus HOM05D008067 ORTHO05D010226 1.9e-10 68.9 68 52.9
Glyma.05G231500 Glycine max HOM05D008067 ORTHO05D010226 4.3e-10 67.8 66 53.0
Glyma.09G190000 Glycine max HOM05D008067 ORTHO05D010226 4.3e-10 67.8 61 57.4
Psat7g013560 Pisum sativum HOM05D008067 ORTHO05D010226 4.3e-10 67.8 73 60.3
SHI02746 Sapria himalayana HOM05D008067 ORTHO05D010226 4.3e-10 67.8 61 54.1
Ah.09g227900 Amaranthus hybridus HOM05D008067 ORTHO05D010226 7.4e-10 67.0 53 66.0
CiPaw.03G232800 Carya illinoinensis HOM05D008067 ORTHO05D010226 7.4e-10 67.0 90 51.1
Lalb_Chr22g0352831 Lupinus albus HOM05D008067 ORTHO05D010226 9.6e-10 66.6 71 53.5
TPR.G21702 Trifolium pratense HOM05D008067 ORTHO05D010226 2.1e-09 65.5 78 51.3
TPR.G23486 Trifolium pratense HOM05D008067 ORTHO05D010226 2.1e-09 65.5 78 51.3
Glyma.07G086900 Glycine max HOM05D008067 ORTHO05D010226 3.7e-09 64.7 59 57.6
Lj2g0022306 Lotus japonicus HOM05D008067 ORTHO05D010226 3.7e-09 64.7 51 58.8
TPR.G35272 Trifolium pratense HOM05D003111 ORTHO05D003502 4.8e-09 64.3 59 55.9
Lj2g0013738 Lotus japonicus HOM05D008067 ORTHO05D010226 8.1e-09 63.5 51 60.8
Psat1g041240 Pisum sativum HOM05D008067 ORTHO05D010226 8.1e-09 63.5 64 56.2
Lj4g0026171 Lotus japonicus HOM05D008067 ORTHO05D010226 2.4e-08 62.0 45 64.4
Sed0018150 Sechium edule HOM05D008067 ORTHO05D010226 4.0e-08 61.2 65 58.5
Medtr6g086485 Medicago truncatula HOM05D008067 ORTHO05D010226 6.9e-08 60.5 76 47.4
Phvul.004G162800 Phaseolus vulgaris HOM05D008067 ORTHO05D010226 6.9e-08 60.5 62 53.2
TAR636G2707 Trochodendron aralioides HOM05D003111 ORTHO05D003502 6.9e-08 60.5 62 50.0
Sed0018286 Sechium edule HOM05D008067 ORTHO05D010226 1.2e-07 59.7 78 48.7
Phvul.002G313700 Phaseolus vulgaris HOM05D008067 ORTHO05D010226 6.4e-06 53.9 36 72.2


User provided reference genes

Program Settings