Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009940 Camellia sinensis var. sinensis HOM05D003337 ORTHO05D003808 0.0e+00 2081.2 1140 100.0
Dinv41471 Davidia involucrata HOM05D003337 ORTHO05D003808 7.7e-209 731.9 1209 41.4
TAR625G0257 Trochodendron aralioides HOM05D003337 ORTHO05D003808 1.9e-159 567.8 1227 36.5
Dinv05003 Davidia involucrata HOM05D003337 ORTHO05D003808 2.9e-155 553.9 1222 35.4
Sabra18G0028200 Salix brachista HOM05D003337 ORTHO05D003808 7.1e-154 549.3 1210 40.2
Peaxi162Scf00136g02012 Petunia axillaris HOM05D003337 ORTHO05D003808 1.6e-153 548.1 1205 35.1
Cc08_g00460 Coffea canephora HOM05D003337 ORTHO05D003808 1.1e-151 542.0 1226 35.1
CiPaw.08G010200 Carya illinoinensis HOM05D003337 ORTHO05D003808 1.6e-150 538.1 1208 34.9
Eucgr.C01723 Eucalyptus grandis HOM05D003337 ORTHO05D003808 3.6e-150 537.0 1298 36.8
Manes.16G123500 Manihot esculenta HOM05D003337 ORTHO05D003808 3.6e-150 537.0 1229 35.3
Ciclev10007238m.g Citrus clementina HOM05D003337 ORTHO05D003808 8.1e-150 535.8 1201 35.1
Potri.006G256400 Populus trichocarpa HOM05D003337 ORTHO05D003808 8.1e-150 535.8 1202 34.5
Duzib168G1956 Durio zibethinus HOM05D003337 ORTHO05D003808 1.4e-149 535.0 1207 35.5
Nn8g39563 Nelumbo nucifera HOM05D003337 ORTHO05D003808 1.8e-149 534.6 1212 35.3
FvH4_2g28850 Fragaria vesca HOM05D003337 ORTHO05D003808 3.1e-149 533.9 1220 34.7
Nn2g12124 Nelumbo nucifera HOM05D003337 ORTHO05D003808 6.8e-149 532.7 1207 34.6
Potri.018G025600 Populus trichocarpa HOM05D003337 ORTHO05D003808 1.2e-148 531.9 1208 34.4
Atru.chr7.2458 Acer truncatum HOM05D003337 ORTHO05D003808 1.5e-148 531.6 1198 35.1
Haze_21497 Corylus avellana HOM05D003337 ORTHO05D003808 3.4e-148 530.4 1231 35.2
MBI14_g37827_MAGBIO Magnolia biondii HOM05D003337 ORTHO05D003808 3.4e-148 530.4 1205 34.4
Dinv18205 Davidia involucrata HOM05D003337 ORTHO05D003808 5.8e-148 529.6 938 39.9
Manes.03G013300 Manihot esculenta HOM05D003337 ORTHO05D003808 5.8e-148 529.6 1206 39.0
FAN20G0291 Fragaria x ananassa HOM05D003337 ORTHO05D003808 9.9e-148 528.9 1214 34.7
GSVIVG01035878001 Vitis vinifera HOM05D003337 ORTHO05D003808 1.7e-147 528.1 1223 34.8
COL.COLO4_18879 Corchorus olitorius HOM05D003337 ORTHO05D003808 2.2e-147 527.7 1205 35.0
Glyma.04G065500 Glycine max HOM05D003337 ORTHO05D003808 6.4e-147 526.2 1227 34.0
MD15G1127100 Malus domestica HOM05D003337 ORTHO05D003808 8.4e-147 525.8 1202 35.4
CSS0040129 Camellia sinensis var. sinensis HOM05D003337 ORTHO05D003808 1.9e-146 524.6 1222 33.8
CiPaw.07G224800 Carya illinoinensis HOM05D003337 ORTHO05D003808 1.9e-146 524.6 920 40.0
Thecc.09G022400 Theobroma cacao HOM05D003337 ORTHO05D003808 5.4e-146 523.1 1201 34.5
Prupe.1G482800 Prunus persica HOM05D003337 ORTHO05D003808 7.1e-146 522.7 923 39.9
Aqoxy7G02409 Aquilegia oxysepala HOM05D003337 ORTHO05D003808 2.7e-145 520.8 1224 34.6
CSS0019364 Camellia sinensis var. sinensis HOM05D003337 ORTHO05D003808 2.7e-145 520.8 1203 34.7
CSS0014408 Camellia sinensis var. sinensis HOM05D003337 ORTHO05D003808 3.5e-145 520.4 1203 34.7
TWI34G0528 Tripterygium wilfordii HOM05D003337 ORTHO05D003808 3.5e-145 520.4 1202 33.9
EL10Ac2g04195 Beta vulgaris HOM05D003337 ORTHO05D003808 6.0e-145 519.6 1198 34.1
TAR636G2033 Trochodendron aralioides HOM05D003337 ORTHO05D003808 6.0e-145 519.6 915 40.8
QL02p021300 Quercus lobata HOM05D003337 ORTHO05D003808 1.3e-144 518.5 1220 34.7
RcHm_v2.0_Chr6g0297611 Rosa chinensis HOM05D003337 ORTHO05D003808 1.7e-144 518.1 1204 34.3
FAN15G2120 Fragaria x ananassa HOM05D003337 ORTHO05D003808 3.9e-144 516.9 1214 34.3
Glyma.06G066900 Glycine max HOM05D003337 ORTHO05D003808 5.1e-144 516.5 1229 34.2
MD08G1156500 Malus domestica HOM05D003337 ORTHO05D003808 5.1e-144 516.5 909 39.7
Nitab4.5_0002042g0010 Nicotiana tabacum HOM05D003337 ORTHO05D003808 1.9e-143 514.6 1223 33.0
FAN24G1139 Fragaria x ananassa HOM05D003337 ORTHO05D003808 2.5e-143 514.2 1240 34.1
PSO170G2416 Papaver somniferum HOM05D003337 ORTHO05D003808 3.3e-143 513.8 1225 34.3
Sabra06G0200600 Salix brachista HOM05D003337 ORTHO05D003808 4.3e-143 513.5 1204 33.8
MSTRG.26016 Avicennia marina HOM05D003337 ORTHO05D003808 5.6e-143 513.1 1202 34.0
FAN27G2849 Fragaria x ananassa HOM05D003337 ORTHO05D003808 1.2e-142 511.9 1214 34.2
CAN.G130.8 Capsicum annuum HOM05D003337 ORTHO05D003808 2.1e-142 511.1 1203 33.7
Sc09g0010250 Simmondsia chinensis HOM05D003337 ORTHO05D003808 4.7e-142 510.0 1198 34.0
Phvul.009G091900 Phaseolus vulgaris HOM05D003337 ORTHO05D003808 8.1e-142 509.2 1230 33.6
Lj1g0009523 Lotus japonicus HOM05D003337 ORTHO05D003808 1.8e-141 508.1 1228 34.1
Oeu053108.1 Olea europaea HOM05D003337 ORTHO05D003808 1.8e-141 508.1 918 39.0
arahy.Tifrunner.gnm1.ann1.C340QI Arachis hypogaea HOM05D003337 ORTHO05D003808 3.1e-141 507.3 1207 34.5
PSO017G4016 Papaver somniferum HOM05D003337 ORTHO05D003808 3.1e-141 507.3 1225 34.2
arahy.Tifrunner.gnm1.ann1.EV8XFE Arachis hypogaea HOM05D003337 ORTHO05D003808 5.2e-141 506.5 1228 34.5
TWI32G1054 Tripterygium wilfordii HOM05D003337 ORTHO05D003808 5.2e-141 506.5 1226 33.2
DCAR_001543 Daucus carota HOM05D003337 ORTHO05D003808 6.8e-141 506.1 1223 33.6
Nitab4.5_0001294g0060 Nicotiana tabacum HOM05D003337 ORTHO05D003808 8.9e-141 505.8 1213 38.8
AUR62012417 Chenopodium quinoa HOM05D003337 ORTHO05D003808 1.2e-140 505.4 1201 33.9
Hma1.2p1_0243F.1_g101010 Hydrangea macrophylla HOM05D003337 ORTHO05D003808 2.0e-140 504.6 1206 33.6
Hund25887 Selenicereus undatus HOM05D003337 ORTHO05D003808 2.6e-140 504.2 1195 33.8
Actinidia14594 Actinidia chinensis HOM05D003337 ORTHO05D003808 4.4e-140 503.4 1224 33.6
Duzib187G1394 Durio zibethinus HOM05D003337 ORTHO05D003808 7.6e-140 502.7 1206 34.9
Medtr3g106700 Medicago truncatula HOM05D003337 ORTHO05D003808 7.6e-140 502.7 1224 38.8
Gorai.009G059000 Gossypium raimondii HOM05D003337 ORTHO05D003808 9.9e-140 502.3 1227 34.7
Gorai.009G059100 Gossypium raimondii HOM05D003337 ORTHO05D003808 9.9e-140 502.3 1206 35.1
Migut.A00028 Erythranthe guttata HOM05D003337 ORTHO05D003808 1.7e-139 501.5 896 38.7
Lj7C724G9 Lonicera japonica HOM05D003337 ORTHO05D003808 1.7e-139 501.5 896 39.1
Sopen06g008090 Solanum pennellii HOM05D003337 ORTHO05D003808 1.7e-139 501.5 913 38.3
Gohir.A05G055800 Gossypium hirsutum HOM05D003337 ORTHO05D003808 2.2e-139 501.1 1226 34.7
Psat5g029560 Pisum sativum HOM05D003337 ORTHO05D003808 2.9e-139 500.7 1225 33.7
ClCG05G016760 Citrullus lanatus HOM05D003337 ORTHO05D003808 3.8e-139 500.4 1201 33.3
VMungo1309G0140 Vigna mungo HOM05D003337 ORTHO05D003808 4.9e-139 500.0 1232 33.9
AUR62031541 Chenopodium quinoa HOM05D003337 ORTHO05D003808 6.4e-139 499.6 1201 33.8
Gohir.D05G057900 Gossypium hirsutum HOM05D003337 ORTHO05D003808 8.4e-139 499.2 1227 34.6
TPR.G3117 Trifolium pratense HOM05D003337 ORTHO05D003808 1.1e-138 498.8 1227 34.5
Nitab4.5_0004664g0060 Nicotiana tabacum HOM05D003337 ORTHO05D003808 3.2e-138 497.3 1187 32.7
Rhsim02G0202500 Rhododendron simsii HOM05D003337 ORTHO05D003808 3.2e-138 497.3 903 37.7
HanXRQChr05g0134851 Helianthus annuus HOM05D003337 ORTHO05D003808 4.2e-138 496.9 1209 33.7
Sed0015158 Sechium edule HOM05D003337 ORTHO05D003808 7.1e-138 496.1 1226 33.0
vmacro11183 Vaccinium macrocarpon HOM05D003337 ORTHO05D003808 7.1e-138 496.1 1229 38.2
ECA246G2127 Erigeron canadensis HOM05D003337 ORTHO05D003808 1.2e-137 495.4 1217 33.5
Lalb_Chr23g0268451 Lupinus albus HOM05D003337 ORTHO05D003808 1.6e-137 495.0 1227 33.6
Gohir.D05G058000 Gossypium hirsutum HOM05D003337 ORTHO05D003808 6.0e-137 493.0 1206 34.8
Gohir.A05G055900 Gossypium hirsutum HOM05D003337 ORTHO05D003808 2.3e-136 491.1 900 39.2
Lalb_Chr11g0063671 Lupinus albus HOM05D003337 ORTHO05D003808 1.5e-135 488.4 1221 34.5
CsaV3_3G046270 Cucumis sativus L. HOM05D003337 ORTHO05D003808 1.9e-135 488.0 1201 33.9
MELO3C003713.2 Cucumis melo HOM05D003337 ORTHO05D003808 9.6e-135 485.7 1201 33.6
SGA_v2.0_scaffold64G21955 Striga asiatica HOM05D003337 ORTHO05D003808 1.3e-134 485.3 1207 34.2
SalBow4G0163 Salvia bowleyana HOM05D003337 ORTHO05D003808 4.8e-134 483.4 902 38.1
Sed0024031 Sechium edule HOM05D003337 ORTHO05D003808 4.0e-133 480.3 1209 32.8
Ah.16g104580 Amaranthus hybridus HOM05D003337 ORTHO05D003808 1.5e-132 478.4 1197 32.8
CSS0034669 Camellia sinensis var. sinensis HOM05D003337 ORTHO05D003808 2.2e-131 474.6 558 50.7
CSS0046302 Camellia sinensis var. sinensis HOM05D003337 ORTHO05D003808 8.4e-131 472.6 558 50.5
Sp4g04460 Schrenkiella parvula HOM05D003337 ORTHO05D003808 3.2e-130 470.7 921 36.7
Lsat_1_v5_gn_5_30121 Lactuca sativa HOM05D003337 ORTHO05D003808 4.2e-130 470.3 1226 32.5
GSVIVG01015601001 Vitis vinifera HOM05D003337 ORTHO05D003808 7.1e-130 469.5 1183 32.0
Aa31sc102G10 Aethionema arabicum HOM05D003337 ORTHO05D003808 4.6e-129 466.8 1218 31.2
BcaC02g08354 Brassica carinata HOM05D003337 ORTHO05D003808 3.9e-128 463.8 922 36.8
BraA09t40970Z Brassica rapa HOM05D003337 ORTHO05D003808 3.9e-128 463.8 922 36.7
BcaC07g40870 Brassica carinata HOM05D003337 ORTHO05D003808 6.6e-128 463.0 926 36.6
BolC4t27068H Brassica oleracea HOM05D003337 ORTHO05D003808 8.7e-128 462.6 922 36.9
Carub.0004s0499 Capsella rubella HOM05D003337 ORTHO05D003808 1.1e-127 462.2 1240 31.7
C04p55320 Brassica napus HOM05D003337 ORTHO05D003808 2.5e-127 461.1 921 37.0
BolC8t51439H Brassica oleracea HOM05D003337 ORTHO05D003808 2.5e-127 461.1 915 36.5
BraA04t17558Z Brassica rapa HOM05D003337 ORTHO05D003808 3.3e-127 460.7 922 36.9
A04p19680 Brassica napus HOM05D003337 ORTHO05D003808 4.3e-127 460.3 922 36.9
C08p38690 Brassica napus HOM05D003337 ORTHO05D003808 7.3e-127 459.5 915 36.5
HPP92_015261 Vanilla planifolia HOM05D003337 ORTHO05D003808 1.3e-126 458.8 1221 32.1
Zm00001eb184600 Zea mays HOM05D003337 ORTHO05D003808 2.8e-126 457.6 1206 30.9
A09p55690 Brassica napus HOM05D003337 ORTHO05D003808 4.8e-126 456.8 911 36.6
BcaB08g35177 Brassica carinata HOM05D003337 ORTHO05D003808 1.1e-125 455.7 1214 31.4
AT2G25320 Arabidopsis thaliana HOM05D003337 ORTHO05D003808 7.6e-124 449.5 929 35.6
AL4G16700 Arabidopsis lyrata HOM05D003337 ORTHO05D003808 3.2e-122 444.1 1216 30.9
BcaB06g28056 Brassica carinata HOM05D003337 ORTHO05D003808 1.8e-120 438.3 1216 30.8
Thhalv10000009m.g Eutrema salsugineum HOM05D003337 ORTHO05D003808 8.7e-120 436.0 916 34.9
CARHR116200 Cardamine hirsuta HOM05D003337 ORTHO05D003808 1.9e-119 434.9 1218 35.6
SHI18538 Sapria himalayana HOM05D003337 ORTHO05D003808 3.3e-119 434.1 1248 31.1
unitig_748.g8275 Utricularia gibba HOM05D003337 ORTHO05D003808 9.6e-119 432.6 900 35.9
Cpa.g.sc217.15 Carica papaya HOM05D003337 ORTHO05D003808 1.6e-118 431.8 1180 31.8
CSS0042062 Camellia sinensis var. sinensis HOM05D003337 ORTHO05D003808 7.6e-116 422.9 557 47.9
CDE02G1979 Ceratophyllum demersum HOM05D003337 ORTHO05D003808 1.1e-114 419.1 1184 31.2
Mapoly0008s0250 Marchantia polymorpha HOM05D003337 ORTHO05D003808 1.9e-114 418.3 1228 29.2
Nitab4.5_0000165g0080 Nicotiana tabacum HOM05D003337 ORTHO05D003808 2.7e-113 414.5 1190 31.3
TAR383G0794 Trochodendron aralioides HOM05D003337 ORTHO05D003808 1.1e-111 409.1 1023 39.6
PGR031G1540 Punica granatum HOM05D003337 ORTHO05D003808 1.8e-109 401.7 1220 31.1
Pp3c2_25380 Physcomitrium patens HOM05D003337 ORTHO05D003808 7.6e-108 396.4 1240 29.5
ATR0739G172 Amborella trichopoda HOM05D003337 ORTHO05D003808 3.8e-107 394.0 963 33.9
SEGI_27956 Sequoiadendron giganteum HOM05D003337 ORTHO05D003808 1.4e-101 375.6 935 31.8
Thecc.09G133400 Theobroma cacao HOM05D003337 ORTHO05D003808 3.4e-100 370.9 1179 31.7
Hma1.2p1_2800F.1_g328770 Hydrangea macrophylla HOM05D003337 ORTHO05D003808 1.4e-98 365.5 960 39.0
SMO144G0040 Selaginella moellendorffii HOM05D003337 ORTHO05D003808 7.2e-98 363.2 1201 33.0
vmacro15258 Vaccinium macrocarpon HOM05D003337 ORTHO05D003808 2.7e-97 361.3 1077 32.4
CSS0025992 Camellia sinensis var. sinensis HOM05D003337 ORTHO05D003808 1.3e-91 342.4 585 41.4
CSS0001606 Camellia sinensis var. sinensis HOM05D003337 ORTHO05D003808 2.5e-90 338.2 585 41.0
CSS0031612 Camellia sinensis var. sinensis HOM05D003337 ORTHO05D003808 9.4e-90 336.3 585 41.0
CBR_g20432 Chara braunii HOM05D003337 ORTHO05D003808 2.2e-86 325.1 1359 25.9
Lalb_Chr08g0244191 Lupinus albus HOM05D003337 ORTHO05D003808 1.1e-85 322.8 719 35.5
Pp3c1_12560 Physcomitrium patens HOM05D003337 ORTHO05D003808 7.7e-84 316.6 1139 33.4
SEGI_13524 Sequoiadendron giganteum HOM05D003337 ORTHO05D003808 3.6e-81 307.8 936 29.3
vmacro22595 Vaccinium macrocarpon HOM05D003337 ORTHO05D003808 1.1e-79 302.8 831 33.7
Pp3c2_25350 Physcomitrium patens HOM05D003337 ORTHO05D003808 1.1e-77 296.2 1237 26.7
Pp3c2_25330 Physcomitrium patens HOM05D003337 ORTHO05D003808 2.7e-76 291.6 946 29.4
CDE05G2189 Ceratophyllum demersum HOM05D003337 ORTHO05D003808 7.5e-71 273.5 1156 27.2
Gorai.010G061000 Gossypium raimondii HOM05D003337 ORTHO05D003808 4.1e-69 267.7 866 28.8
Gohir.D06G052600 Gossypium hirsutum HOM05D003337 ORTHO05D003808 1.2e-68 266.2 868 28.7
AagrBONN_evm.TU.Sc2ySwM_344.2463 Anthoceros agrestis HOM05D003337 ORTHO05D003808 2.2e-67 261.9 940 26.8
Gohir.A06G053550 Gossypium hirsutum HOM05D003337 ORTHO05D003808 6.1e-65 253.8 863 28.7
SEGI_23839 Sequoiadendron giganteum HOM05D003337 ORTHO05D003808 2.8e-62 245.0 974 26.2
Hma1.2p1_0497F.1_g166430 Hydrangea macrophylla HOM05D003337 ORTHO05D003808 8.3e-62 243.4 740 31.5
HPP92_010004 Vanilla planifolia HOM05D003337 ORTHO05D003808 2.7e-60 238.4 358 39.9
CANSAT25G2205 Cannabis sativa HOM05D003337 ORTHO05D003808 2.4e-45 188.7 379 37.5
Solyc06g017970.4 Solanum lycopersicum HOM05D003337 ORTHO05D003808 6.2e-41 174.1 417 33.8
Lalb_Chr08g0244181 Lupinus albus HOM05D003337 ORTHO05D003808 1.6e-33 149.4 227 41.4
AT2G25330 Arabidopsis thaliana HOM05D003337 ORTHO05D003808 2.1e-33 149.1 219 42.0
Potri.006G065300 Populus trichocarpa HOM05D003337 ORTHO05D003808 8.1e-33 147.1 1216 27.3
SEGI_27941 Sequoiadendron giganteum HOM05D003337 ORTHO05D003808 1.1e-32 146.7 215 42.8
Oeu060140.1 Olea europaea HOM05D003337 ORTHO05D003808 1.8e-24 119.4 333 31.5
Ca_15750_v3 Cicer arietinum L. HOM05D003337 ORTHO05D003808 1.1e-21 110.2 157 43.3
Actinidia15665 Actinidia chinensis HOM05D003337 ORTHO05D003808 4.2e-21 108.2 141 45.4
COL.COLO4_35177 Corchorus olitorius HOM05D003337 ORTHO05D003808 3.0e-19 102.1 212 33.0
Lalb_Chr08g0244201 Lupinus albus HOM05D003337 ORTHO05D003808 5.6e-18 97.8 140 42.9
Eucgr.L02898 Eucalyptus grandis HOM05D003337 ORTHO05D003808 2.1e-17 95.9 124 45.2
Eucgr.L02163 Eucalyptus grandis HOM05D003337 ORTHO05D003808 8.1e-17 94.0 125 45.6
Os02g0613400 Oryza sativa ssp. japonica HOM05D003337 ORTHO05D003808 9.0e-16 90.5 127 39.4
Oeu012290.1 Olea europaea HOM05D003337 ORTHO05D003808 4.9e-14 84.7 195 32.8
CSS0001831 Camellia sinensis var. sinensis HOM05D003337 ORTHO05D003808 6.4e-14 84.3 56 76.8
CSS0038017 Camellia sinensis var. sinensis HOM05D003337 ORTHO05D003808 6.4e-14 84.3 56 76.8
CSS0019032 Camellia sinensis var. sinensis HOM05D003337 ORTHO05D003808 1.9e-13 82.8 56 75.0
Rhsim02G0021900 Rhododendron simsii HOM05D003337 ORTHO05D003808 4.6e-12 78.2 201 30.3
Psat7g152080 Pisum sativum HOM05D001236 ORTHO05D001090 7.9e-12 77.4 107 44.9
Psat7g185560 Pisum sativum HOM05D003337 ORTHO05D003808 4.3e-10 71.6 87 51.7
Psat7g185680 Pisum sativum HOM05D003337 ORTHO05D003808 9.6e-10 70.5 87 50.6
HanXRQChr05g0146221 Helianthus annuus HOM05D000279 ORTHO05D000498 4.0e-08 65.1 226 23.9
Psat7g152120 Pisum sativum HOM05D001236 ORTHO05D001090 6.9e-08 64.3 61 57.4
SalBow2G2138 Salvia bowleyana HOM05D003337 ORTHO05D003808 2.0e-07 62.8 190 30.5
HanXRQChr05g0145941 Helianthus annuus HOM05D000279 ORTHO05D003808 2.6e-07 62.4 203 24.6
Aa31LG11G10200 Aethionema arabicum HOM05D000385 ORTHO05D000269 4.9e-06 58.2 202 26.2


User provided reference genes

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