Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009912 Camellia sinensis var. sinensis HOM05D004735 ORTHO05D005243 5.1e-54 214.2 108 100.0
CSS0011678 Camellia sinensis var. sinensis HOM05D004735 ORTHO05D005243 4.6e-47 191.0 98 99.0
CSS0022550 Camellia sinensis var. sinensis HOM05D004735 ORTHO05D005243 8.2e-36 153.7 99 74.7
Dinv33275 Davidia involucrata HOM05D004735 ORTHO05D005243 1.7e-33 146.0 99 73.7
Dinv25616 Davidia involucrata HOM05D004735 ORTHO05D005243 8.5e-33 143.7 99 73.7
Lj7A617T74 Lonicera japonica HOM05D004735 ORTHO05D005243 1.8e-30 136.0 99 68.7
Rhsim08G0038800 Rhododendron simsii HOM05D004735 ORTHO05D005243 3.9e-30 134.8 99 64.6
Actinidia37716 Actinidia chinensis HOM05D004735 ORTHO05D005243 1.1e-29 133.3 99 67.7
vmacro18383 Vaccinium macrocarpon HOM05D004735 ORTHO05D005243 2.5e-29 132.1 99 62.6
Hma1.2p1_0421F.1_g149860 Hydrangea macrophylla HOM05D004735 ORTHO05D005243 6.9e-27 124.0 99 62.6
ECA246G4565 Erigeron canadensis HOM05D004735 ORTHO05D005243 2.6e-26 122.1 96 59.4
Cc07_g01350 Coffea canephora HOM05D004735 ORTHO05D005243 3.4e-26 121.7 95 63.2
DCAR_014465 Daucus carota HOM05D004735 ORTHO05D005243 2.9e-25 118.6 98 61.2
HanXRQChr17g0550891 Helianthus annuus HOM05D004735 ORTHO05D005243 6.5e-25 117.5 99 59.6
HanXRQChr15g0475721 Helianthus annuus HOM05D004735 ORTHO05D005243 1.9e-24 115.9 96 59.4
Lsat_1_v5_gn_3_104900 Lactuca sativa HOM05D004735 ORTHO05D005243 1.9e-24 115.9 96 58.3
Duzib264G0086 Durio zibethinus HOM05D004735 ORTHO05D005243 1.2e-23 113.2 98 53.1
TAR371G0169 Trochodendron aralioides HOM05D004735 ORTHO05D008917 2.1e-23 112.5 99 55.6
Manes.04G093600 Manihot esculenta HOM05D004735 ORTHO05D005243 2.7e-23 112.1 99 54.5
Prupe.3G314000 Prunus persica HOM05D004735 ORTHO05D005243 1.4e-22 109.8 99 54.5
GSVIVG01032979001 Vitis vinifera HOM05D004735 ORTHO05D005243 1.8e-22 109.4 99 59.6
COL.COLO4_13380 Corchorus olitorius HOM05D004735 ORTHO05D005243 3.0e-22 108.6 98 52.0
CiPaw.03G001400 Carya illinoinensis HOM05D004735 ORTHO05D005243 3.9e-22 108.2 98 55.1
CiPaw.04G001000 Carya illinoinensis HOM05D004735 ORTHO05D005243 3.9e-22 108.2 96 54.2
MSTRG.24121 Avicennia marina HOM05D004735 ORTHO05D005243 1.1e-21 106.7 95 52.6
CANSAT64G0702 Cannabis sativa HOM05D004735 ORTHO05D005243 1.5e-21 106.3 98 57.1
Nitab4.5_0000519g0300 Nicotiana tabacum HOM05D004735 ORTHO05D005243 2.6e-21 105.5 95 54.7
Nitab4.5_0002172g0170 Nicotiana tabacum HOM05D004735 ORTHO05D005243 2.6e-21 105.5 95 54.7
QL02p069299 Quercus lobata HOM05D004735 ORTHO05D005243 2.6e-21 105.5 98 55.1
Potri.014G144100 Populus trichocarpa HOM05D004735 ORTHO05D005243 3.3e-21 105.1 95 56.8
Thecc.04G048500 Theobroma cacao HOM05D004735 ORTHO05D005243 3.3e-21 105.1 98 51.0
Atru.chr6.2700 Acer truncatum HOM05D004735 ORTHO05D005243 5.7e-21 104.4 98 55.1
Ca_16589_v3 Cicer arietinum L. HOM05D004735 ORTHO05D005243 5.7e-21 104.4 99 56.6
SalBow4G2972 Salvia bowleyana HOM05D004735 ORTHO05D005243 7.4e-21 104.0 95 52.6
Gorai.007G073000 Gossypium raimondii HOM05D004735 ORTHO05D005243 1.7e-20 102.8 98 51.0
Potri.002G237800 Populus trichocarpa HOM05D004735 ORTHO05D005243 1.7e-20 102.8 95 54.7
TWI32G0607 Tripterygium wilfordii HOM05D004735 ORTHO05D005243 1.7e-20 102.8 95 51.6
Manes.11G076100 Manihot esculenta HOM05D004735 ORTHO05D005243 2.2e-20 102.4 95 53.7
CAN.G473.160 Capsicum annuum HOM05D004735 ORTHO05D005243 2.8e-20 102.1 94 53.2
Solyc02g094540.4 Solanum lycopersicum HOM05D004735 ORTHO05D005243 2.8e-20 102.1 94 53.2
Sopen02g039210 Solanum pennellii HOM05D004735 ORTHO05D005243 3.7e-20 101.7 94 53.2
Glyma.16G147800 Glycine max HOM05D004735 ORTHO05D005243 4.8e-20 101.3 92 56.5
Lalb_Chr21g0316971 Lupinus albus HOM05D004735 ORTHO05D005243 4.8e-20 101.3 99 56.6
Gohir.A11G063833 Gossypium hirsutum HOM05D004735 ORTHO05D005243 6.3e-20 100.9 98 50.0
Gohir.A11G063900 Gossypium hirsutum HOM05D004735 ORTHO05D005243 6.3e-20 100.9 98 50.0
Lalb_Chr02g0156851 Lupinus albus HOM05D004735 ORTHO05D005243 6.3e-20 100.9 99 54.5
MD09G1002200 Malus domestica HOM05D004735 ORTHO05D005243 6.3e-20 100.9 99 50.5
EL10Ac3g06356 Beta vulgaris HOM05D004735 ORTHO05D005243 8.2e-20 100.5 94 51.1
Duzib147G0188 Durio zibethinus HOM05D004735 ORTHO05D005243 1.1e-19 100.1 99 52.5
Sabra02G0181300 Salix brachista HOM05D004735 ORTHO05D005243 1.1e-19 100.1 99 53.5
Duzib187G1028 Durio zibethinus HOM05D004735 ORTHO05D005243 1.4e-19 99.8 98 51.0
VMungo0464G0888 Vigna mungo HOM05D004735 ORTHO05D005243 1.4e-19 99.8 99 52.5
Gohir.D11G068200 Gossypium hirsutum HOM05D004735 ORTHO05D005243 2.4e-19 99.0 98 50.0
Psat0s787g0080 Pisum sativum HOM05D004735 ORTHO05D005243 3.1e-19 98.6 99 55.6
Migut.F00010 Erythranthe guttata HOM05D004735 ORTHO05D005243 6.9e-19 97.4 103 48.5
MD17G1006400 Malus domestica HOM05D004735 ORTHO05D005243 6.9e-19 97.4 99 49.5
Hund12196 Selenicereus undatus HOM05D004735 ORTHO05D005243 9.1e-19 97.1 99 50.5
Glyma.02G066700 Glycine max HOM05D004735 ORTHO05D005243 1.2e-18 96.7 92 54.3
Sabra14G0108800 Salix brachista HOM05D004735 ORTHO05D005243 1.5e-18 96.3 95 52.6
Oeu035383.1 Olea europaea HOM05D004735 ORTHO05D005243 2.0e-18 95.9 81 59.3
Nn4g22117 Nelumbo nucifera HOM05D004735 ORTHO05D005243 2.6e-18 95.5 98 49.0
THA.LOC104821139 Tarenaya hassleriana HOM05D004735 ORTHO05D005243 2.6e-18 95.5 94 52.1
Haze_14980 Corylus avellana HOM05D004735 ORTHO05D005243 3.4e-18 95.1 94 54.3
Sp6g30050 Schrenkiella parvula HOM05D004735 ORTHO05D005243 3.4e-18 95.1 94 52.1
Medtr6g033235 Medicago truncatula HOM05D004735 ORTHO05D005243 4.5e-18 94.7 99 52.5
Cfa007143 Carpinus fangiana HOM05D004735 ORTHO05D005243 5.9e-18 94.4 94 53.2
Phvul.004G069600 Phaseolus vulgaris HOM05D004735 ORTHO05D005243 5.9e-18 94.4 99 51.5
Ciclev10014280m.g Citrus clementina HOM05D004735 ORTHO05D005243 7.7e-18 94.0 96 50.0
TWI60G1686 Tripterygium wilfordii HOM05D004735 ORTHO05D005243 7.7e-18 94.0 95 47.4
Aa31LG11G15430 Aethionema arabicum HOM05D004735 ORTHO05D005243 1.3e-17 93.2 94 52.1
MBI07_g13942_MAGBIO Magnolia biondii HOM05D004735 ORTHO05D005243 1.3e-17 93.2 90 50.0
Carub.0006s1214 Capsella rubella HOM05D004735 ORTHO05D005243 1.7e-17 92.8 94 51.1
arahy.Tifrunner.gnm1.ann1.HAHJ6R Arachis hypogaea HOM05D004735 ORTHO05D005243 2.9e-17 92.0 97 50.5
CARHR199450 Cardamine hirsuta HOM05D004735 ORTHO05D005243 3.8e-17 91.7 94 48.9
Lj2g0010549 Lotus japonicus HOM05D004735 ORTHO05D005243 3.8e-17 91.7 99 52.5
arahy.Tifrunner.gnm1.ann1.X964XN Arachis hypogaea HOM05D004735 ORTHO05D005243 5.0e-17 91.3 99 49.5
RcHm_v2.0_Chr2g0176561 Rosa chinensis HOM05D004735 ORTHO05D005243 5.0e-17 91.3 99 50.5
BraA10t44508Z Brassica rapa HOM05D000139 ORTHO05D005243 6.5e-17 90.9 94 50.0
Lalb_Chr22g0359831 Lupinus albus HOM05D004735 ORTHO05D005243 8.5e-17 90.5 95 53.7
PSO478G1205 Papaver somniferum HOM05D004735 ORTHO05D005243 1.1e-16 90.1 91 49.5
BcaB01g05325 Brassica carinata HOM05D004735 ORTHO05D005243 1.4e-16 89.7 99 48.5
Thhalv10012594m.g Eutrema salsugineum HOM05D004735 ORTHO05D005243 1.4e-16 89.7 94 50.0
Medtr7g084170 Medicago truncatula HOM05D004735 ORTHO05D005243 1.4e-16 89.7 92 52.2
PSO017G6705 Papaver somniferum HOM05D004735 ORTHO05D005243 1.4e-16 89.7 91 49.5
FAN02G4354 Fragaria x ananassa HOM05D004735 ORTHO05D005243 1.9e-16 89.4 99 48.5
Peaxi162Scf00420g00844 Petunia axillaris HOM05D004735 ORTHO05D005243 1.9e-16 89.4 110 45.5
AT5G13950 Arabidopsis thaliana HOM05D004735 ORTHO05D005243 2.5e-16 89.0 92 50.0
FAN05G2416 Fragaria x ananassa HOM05D004735 ORTHO05D005243 2.5e-16 89.0 99 48.5
Psat7g164720 Pisum sativum HOM05D000121 ORTHO05D000102 2.5e-16 89.0 79 59.5
Ah.13g074210 Amaranthus hybridus HOM05D004735 ORTHO05D005243 3.2e-16 88.6 94 45.7
C03p07280 Brassica napus HOM05D004735 ORTHO05D005243 3.2e-16 88.6 99 48.5
Eucgr.G01927 Eucalyptus grandis HOM05D004735 ORTHO05D005243 3.2e-16 88.6 99 44.4
C09p63170 Brassica napus HOM05D004735 ORTHO05D005243 4.2e-16 88.2 94 48.9
Gohir.D10G081300 Gossypium hirsutum HOM05D004735 ORTHO05D005243 5.5e-16 87.8 99 43.4
Oeu035273.1 Olea europaea HOM05D004735 ORTHO05D005243 5.5e-16 87.8 98 49.0
AL6G24610 Arabidopsis lyrata HOM05D004735 ORTHO05D005243 7.2e-16 87.4 92 48.9
BolC9t59152H Brassica oleracea HOM05D004735 ORTHO05D005243 7.2e-16 87.4 95 48.4
AUR62030086 Chenopodium quinoa HOM05D004735 ORTHO05D005243 7.2e-16 87.4 94 45.7
AUR62038220 Chenopodium quinoa HOM05D004735 ORTHO05D005243 7.2e-16 87.4 94 45.7
FvH4_6g54340 Fragaria vesca HOM05D004735 ORTHO05D005243 7.2e-16 87.4 99 47.5
FAN09G0836 Fragaria x ananassa HOM05D004735 ORTHO05D005243 7.2e-16 87.4 99 47.5
FAN14G4878 Fragaria x ananassa HOM05D004735 ORTHO05D005243 7.2e-16 87.4 99 47.5
A10p24440 Brassica napus HOM05D004735 ORTHO05D005243 9.4e-16 87.0 95 48.4
Gohir.A10G069900 Gossypium hirsutum HOM05D004735 ORTHO05D005243 9.4e-16 87.0 99 43.4
BolC3t13230H Brassica oleracea HOM05D004735 ORTHO05D005243 1.2e-15 86.7 99 46.5
SGA_v2.0_scaffold423G51443 Striga asiatica HOM05D004735 ORTHO05D005243 1.2e-15 86.7 95 47.4
TPR.G15417 Trifolium pratense HOM05D004735 ORTHO05D005243 2.1e-15 85.9 92 50.0
THA.LOC104802362 Tarenaya hassleriana HOM05D004735 ORTHO05D005243 3.6e-15 85.1 94 45.7
Gorai.011G088500 Gossypium raimondii HOM05D004735 ORTHO05D005243 8.0e-15 84.0 99 42.4
PGR042G1405 Punica granatum HOM05D004735 ORTHO05D005243 8.0e-15 84.0 99 44.4
Lj1g0021966 Lotus japonicus HOM05D004735 ORTHO05D005243 1.0e-14 83.6 101 47.5
Ca_08203_v3 Cicer arietinum L. HOM05D004735 ORTHO05D005243 1.8e-14 82.8 92 51.1
CsaV3_5G024940 Cucumis sativus L. HOM05D004735 ORTHO05D005243 3.9e-14 81.6 92 43.5
MELO3C005100.2 Cucumis melo HOM05D004735 ORTHO05D005243 5.2e-14 81.3 92 43.5
Sed0022562 Sechium edule HOM05D004735 ORTHO05D005243 8.8e-14 80.5 98 42.9
Sc03g0005270 Simmondsia chinensis HOM05D004735 ORTHO05D005243 1.1e-13 80.1 96 42.7
ClCG01G007860 Citrullus lanatus HOM05D004735 ORTHO05D005243 2.0e-13 79.3 91 44.0
CDE02G2610 Ceratophyllum demersum HOM05D004735 ORTHO05D005243 3.3e-13 78.6 94 41.5
CDE06G2773 Ceratophyllum demersum HOM05D004735 ORTHO05D005243 4.4e-13 78.2 94 40.4
unitig_0.g1642 Utricularia gibba HOM05D004735 ORTHO05D005243 7.4e-13 77.4 94 45.7
Psat3g093080 Pisum sativum HOM05D004735 ORTHO05D005243 1.7e-12 76.3 91 47.3
Ah.07g203970 Amaranthus hybridus HOM05D004735 ORTHO05D005243 2.2e-12 75.9 92 45.7
TPR.G28482 Trifolium pratense HOM05D004735 ORTHO05D005243 1.4e-11 73.2 58 63.8
Cpa.g.sc70.59 Carica papaya HOM05D004735 ORTHO05D005243 2.2e-09 65.9 60 58.3
BolC2t06598H Brassica oleracea HOM05D000139 ORTHO05D000103 1.5e-08 63.2 57 57.9
C02p06510 Brassica napus HOM05D000139 ORTHO05D000103 5.5e-08 61.2 57 56.1
ATR0582G141 Amborella trichopoda HOM05D004735 ORTHO05D005243 4.7e-07 58.2 96 34.4
Zm00001eb307010 Zea mays HOM05D004735 ORTHO05D005243 1.8e-06 56.2 97 32.0


User provided reference genes

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