Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009907 Camellia sinensis var. sinensis HOM05D001647 ORTHO05D017173 3.2e-78 295.0 151 100.0
CSS0045042 Camellia sinensis var. sinensis HOM05D001647 ORTHO05D017173 9.6e-75 283.5 151 97.4
CSS0014342 Camellia sinensis var. sinensis HOM05D001647 ORTHO05D017173 1.4e-54 216.5 151 80.8
CSS0046209 Camellia sinensis var. sinensis HOM05D001647 ORTHO05D017173 1.1e-41 173.7 151 70.9
Dinv22746 Davidia involucrata HOM05D001647 ORTHO05D001191 4.5e-40 168.3 142 69.7
QL01p055435 Quercus lobata HOM05D001647 ORTHO05D017173 5.5e-38 161.4 141 66.0
QL10p050116 Quercus lobata HOM05D001647 ORTHO05D001191 5.5e-38 161.4 141 66.0
Lj3A10G10 Lonicera japonica HOM05D001647 ORTHO05D001191 9.3e-38 160.6 124 71.8
Duzib212G0802 Durio zibethinus HOM05D001647 ORTHO05D001191 2.1e-37 159.5 141 64.5
CiPaw.02G054100 Carya illinoinensis HOM05D001647 ORTHO05D001191 1.8e-36 156.4 141 63.1
ClCG10G015540 Citrullus lanatus HOM05D001647 ORTHO05D001191 3.3e-35 152.1 145 65.5
Thecc.04G177300 Theobroma cacao HOM05D001647 ORTHO05D001191 1.6e-34 149.8 141 63.8
Prupe.1G196500 Prunus persica HOM05D001647 ORTHO05D001191 2.8e-34 149.1 134 66.4
Rhsim02G0081300 Rhododendron simsii HOM05D001647 ORTHO05D001191 4.8e-34 148.3 142 65.5
Atru.chr4.2956 Acer truncatum HOM05D001647 ORTHO05D001191 1.8e-33 146.4 142 63.4
MD04G1042300 Malus domestica HOM05D001647 ORTHO05D001191 1.2e-32 143.7 135 65.9
Gorai.006G229000 Gossypium raimondii HOM05D001647 ORTHO05D001191 2.6e-32 142.5 141 61.0
Gohir.A09G211500 Gossypium hirsutum HOM05D001647 ORTHO05D001191 3.4e-32 142.1 141 61.0
COL.COLO4_16174 Corchorus olitorius HOM05D001647 ORTHO05D001191 5.9e-32 141.4 144 59.7
MELO3C009824.2 Cucumis melo HOM05D001647 ORTHO05D001191 1.0e-31 140.6 145 61.4
Aqoxy6G01582 Aquilegia oxysepala HOM05D001647 ORTHO05D001191 2.9e-31 139.0 142 61.3
Aqoxy6G01579 Aquilegia oxysepala HOM05D001647 ORTHO05D001191 6.5e-31 137.9 142 60.6
Gohir.D09G205000 Gossypium hirsutum HOM05D001647 ORTHO05D001191 6.5e-31 137.9 142 60.6
Nn1g09609 Nelumbo nucifera HOM05D001647 ORTHO05D001191 9.4e-30 134.0 138 59.4
AUR62002323 Chenopodium quinoa HOM05D001647 ORTHO05D001191 2.1e-29 132.9 142 59.2
Cfa015176 Carpinus fangiana HOM05D001647 ORTHO05D001191 2.7e-29 132.5 157 56.1
MBI08_g20601_MAGBIO Magnolia biondii HOM05D001647 ORTHO05D001191 2.7e-29 132.5 145 61.4
Potri.007G129600 Populus trichocarpa HOM05D001647 ORTHO05D001191 2.7e-29 132.5 136 62.5
Lj6C11T4 Lonicera japonica HOM05D001647 ORTHO05D017173 1.8e-28 129.8 141 60.3
AUR62023863 Chenopodium quinoa HOM05D001647 ORTHO05D001191 2.3e-28 129.4 142 57.7
Manes.04G043600 Manihot esculenta HOM05D001647 ORTHO05D001191 2.3e-28 129.4 136 59.6
Lalb_Chr03g0026081 Lupinus albus HOM05D001647 ORTHO05D001191 3.9e-28 128.6 141 54.6
CsaV3_3G040890 Cucumis sativus L. HOM05D001647 ORTHO05D001191 5.1e-28 128.3 144 58.3
arahy.Tifrunner.gnm1.ann1.0Q1I8G Arachis hypogaea HOM05D001647 ORTHO05D001191 6.7e-28 127.9 141 53.2
Ciclev10020228m.g Citrus clementina HOM05D001647 ORTHO05D001191 1.1e-27 127.1 138 56.5
arahy.Tifrunner.gnm1.ann1.G4MAIF Arachis hypogaea HOM05D001647 ORTHO05D001191 2.6e-27 125.9 141 53.2
VMungo1127G2188 Vigna mungo HOM05D001647 ORTHO05D001191 2.6e-27 125.9 112 61.6
Cc04_g16720 Coffea canephora HOM05D001647 ORTHO05D001191 3.3e-27 125.6 123 60.2
RcHm_v2.0_Chr4g0406531 Rosa chinensis HOM05D001647 ORTHO05D001191 3.3e-27 125.6 89 76.4
Sabra07G0105500 Salix brachista HOM05D001647 ORTHO05D001191 4.4e-27 125.2 112 63.4
DCAR_009853 Daucus carota HOM05D001647 ORTHO05D001191 2.8e-26 122.5 143 55.9
THA.LOC104815857 Tarenaya hassleriana HOM05D001647 ORTHO05D001191 3.7e-26 122.1 140 57.1
Hund03168 Selenicereus undatus HOM05D001647 ORTHO05D017173 6.3e-26 121.3 115 63.5
Cpa.g.sc9.296 Carica papaya HOM05D001647 ORTHO05D001191 1.8e-25 119.8 91 70.3
TWI15G0581 Tripterygium wilfordii HOM05D001647 ORTHO05D001191 3.1e-25 119.0 134 57.5
Actinidia34598 Actinidia chinensis HOM05D001647 ORTHO05D017173 1.2e-24 117.1 98 62.2
Lj3g0005963 Lotus japonicus HOM05D001647 ORTHO05D001191 1.2e-24 117.1 140 54.3
Sed0028231 Sechium edule HOM05D001647 ORTHO05D001191 1.5e-24 116.7 141 56.7
Aa31LG5G7750 Aethionema arabicum HOM05D001528 ORTHO05D002760 2.6e-24 115.9 144 54.2
Ca_20792_v3 Cicer arietinum L. HOM05D001647 ORTHO05D001191 2.6e-24 115.9 140 55.7
PSO732G0352 Papaver somniferum HOM05D000793 ORTHO05D001191 2.6e-24 115.9 140 52.1
BcaC01g04968 Brassica carinata HOM05D001647 ORTHO05D001191 3.4e-24 115.5 137 57.7
A03p26360 Brassica napus HOM05D001647 ORTHO05D001191 3.4e-24 115.5 135 57.0
BolC3t15505H Brassica oleracea HOM05D001647 ORTHO05D001191 3.4e-24 115.5 137 57.7
MSTRG.27406 Avicennia marina HOM05D001647 ORTHO05D001191 4.5e-24 115.2 146 55.5
Sc19g0002950 Simmondsia chinensis HOM05D001647 ORTHO05D001191 4.5e-24 115.2 107 66.4
CARHR121430 Cardamine hirsuta HOM05D001647 ORTHO05D001191 7.7e-24 114.4 85 72.9
Phvul.011G053900 Phaseolus vulgaris HOM05D001647 ORTHO05D001191 1.0e-23 114.0 103 61.2
AL4G21530 Arabidopsis lyrata HOM05D001647 ORTHO05D001191 1.3e-23 113.6 85 72.9
C03p31620 Brassica napus HOM05D001647 ORTHO05D001191 1.3e-23 113.6 137 56.9
Cc03_g11950 Coffea canephora HOM05D001647 ORTHO05D001191 1.3e-23 113.6 123 56.9
Ah.07g202130 Amaranthus hybridus HOM05D001647 ORTHO05D001191 2.2e-23 112.8 85 75.3
EL10Ac3g05979 Beta vulgaris HOM05D001647 ORTHO05D001191 2.2e-23 112.8 141 53.9
SGA_v2.0_scaffold221G42702 Striga asiatica HOM05D001647 ORTHO05D001191 6.5e-23 111.3 78 84.6
Psat7g209920 Pisum sativum HOM05D001647 ORTHO05D001191 1.4e-22 110.2 137 52.6
Sp4g11300 Schrenkiella parvula HOM05D001647 ORTHO05D001191 2.5e-22 109.4 138 52.9
FvH4_4g10890 Fragaria vesca HOM05D001647 ORTHO05D001191 3.2e-22 109.0 85 74.1
AT2G28480 Arabidopsis thaliana HOM05D001647 ORTHO05D001191 5.5e-22 108.2 139 54.7
SalBow3G2902 Salvia bowleyana HOM05D001647 ORTHO05D001191 5.5e-22 108.2 124 57.3
ATR0824G265 Amborella trichopoda HOM05D001647 ORTHO05D017173 1.2e-21 107.1 154 51.3
FAN12G2494 Fragaria x ananassa HOM05D001647 ORTHO05D001191 1.6e-21 106.7 85 71.8
FAN17G2196 Fragaria x ananassa HOM05D001647 ORTHO05D001191 1.6e-21 106.7 85 72.9
Migut.D01562 Erythranthe guttata HOM05D001647 ORTHO05D001191 2.1e-21 106.3 122 58.2
FAN07G0844 Fragaria x ananassa HOM05D001647 ORTHO05D001191 2.7e-21 105.9 85 70.6
Medtr4g067300 Medicago truncatula HOM05D001647 ORTHO05D001191 2.7e-21 105.9 141 49.6
Thhalv10016829m.g Eutrema salsugineum HOM05D001647 ORTHO05D001191 3.6e-21 105.5 83 69.9
BcaB01g03105 Brassica carinata HOM05D001647 ORTHO05D001191 4.7e-21 105.1 138 54.3
C04p22880 Brassica napus HOM05D001647 ORTHO05D001191 2.3e-20 102.8 138 52.2
Glyma.12G051900 Glycine max HOM05D001647 ORTHO05D001191 3.9e-20 102.1 104 56.7
Lsat_1_v5_gn_1_77501 Lactuca sativa HOM05D001647 ORTHO05D001191 8.8e-20 100.9 112 55.4
Carub.0004s0942 Capsella rubella HOM05D001647 ORTHO05D001191 1.1e-19 100.5 138 52.9
Peaxi162Scf00141g00924 Petunia axillaris HOM05D001647 ORTHO05D001191 2.6e-19 99.4 97 61.9
unitig_37.g12021 Utricularia gibba HOM05D001647 ORTHO05D001191 7.4e-19 97.8 96 64.6
PGSC0003DMG400011786 Solanum tuberosum HOM05D001647 ORTHO05D001191 1.3e-18 97.1 118 54.2
ECA248G3160 Erigeron canadensis HOM05D001647 ORTHO05D001191 1.7e-18 96.7 78 74.4
Oeu053823.2 Olea europaea HOM05D001647 ORTHO05D001191 3.7e-18 95.5 93 64.5
Eucgr.A00093 Eucalyptus grandis HOM05D001647 ORTHO05D001191 1.1e-17 94.0 103 52.4
CAN.G1002.19 Capsicum annuum HOM05D001647 ORTHO05D001191 1.8e-17 93.2 104 52.9
BolC4t23784H Brassica oleracea HOM05D001647 ORTHO05D001191 4.1e-17 92.0 138 49.3
Solyc09g005270.3 Solanum lycopersicum HOM05D001647 ORTHO05D001191 7.0e-17 91.3 122 53.3
TPR.G34241 Trifolium pratense HOM05D001647 ORTHO05D001191 4.5e-16 88.6 139 46.0
Rhsim05G0023400 Rhododendron simsii HOM05D010576 ORTHO05D012109 5.9e-16 88.2 145 46.9
PGR083G0602 Punica granatum HOM05D001647 ORTHO05D001191 1.1e-14 84.0 142 43.0
Sopen09g001240 Solanum pennellii HOM05D001647 ORTHO05D001191 1.5e-14 83.6 122 50.8
HanXRQChr01g0023811 Helianthus annuus HOM05D001647 ORTHO05D001191 5.5e-14 81.6 139 46.8
BcaB02g10162 Brassica carinata HOM05D001647 ORTHO05D001191 1.2e-11 73.9 135 45.2
CDE02G4217 Ceratophyllum demersum HOM05D001647 ORTHO05D001191 7.5e-11 71.2 61 72.1
PGSC0003DMG400015335 Solanum tuberosum HOM05D001647 ORTHO05D001191 2.2e-10 69.7 113 43.4
Os01g0958400 Oryza sativa ssp. japonica HOM05D001647 ORTHO05D001191 4.8e-10 68.6 140 42.1
Nitab4.5_0000511g0050 Nicotiana tabacum HOM05D001647 ORTHO05D001191 8.2e-10 67.8 46 73.9
Solyc12g014280.2 Solanum lycopersicum HOM05D001647 ORTHO05D001191 8.2e-10 67.8 122 41.0
Nitab4.5_0000335g0080 Nicotiana tabacum HOM05D001647 ORTHO05D001191 1.8e-09 66.6 103 44.7
Cc03_g12360 Coffea canephora HOM05D001647 ORTHO05D001191 1.0e-07 60.8 44 84.1
Zm00001eb140480 Zea mays HOM05D001647 ORTHO05D001191 1.3e-07 60.5 137 39.4
Sopen12g006070 Solanum pennellii HOM05D001647 ORTHO05D001191 2.2e-07 59.7 122 38.5
GSVIVG01010789001 Vitis vinifera HOM05D001647 ORTHO05D001191 2.2e-07 59.7 44 84.1


User provided reference genes

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