Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009905 Camellia sinensis var. sinensis HOM05D007413 ORTHO05D009357 8.1e-52 206.8 107 100.0
CSS0018085 Camellia sinensis var. sinensis HOM05D007413 ORTHO05D009357 2.3e-51 205.3 107 99.1
Hma1.2p1_0481F.1_g162070 Hydrangea macrophylla HOM05D007413 ORTHO05D009357 2.4e-19 99.0 114 57.9
CAN.G206.219 Capsicum annuum HOM05D007413 ORTHO05D009357 2.6e-18 95.5 102 54.9
Migut.K01283 Erythranthe guttata HOM05D007413 ORTHO05D009357 1.3e-17 93.2 90 57.8
Oeu062157.1 Olea europaea HOM05D007413 ORTHO05D009357 4.9e-17 91.3 103 53.4
Solyc02g088740.1 Solanum lycopersicum HOM05D007413 ORTHO05D009357 4.2e-16 88.2 104 54.8
Nitab4.5_0000565g0230 Nicotiana tabacum HOM05D007413 ORTHO05D009357 7.1e-16 87.4 85 57.6
Actinidia26249 Actinidia chinensis HOM05D007413 ORTHO05D009357 9.3e-16 87.0 100 55.0
Cfa007655 Carpinus fangiana HOM05D007413 ORTHO05D009357 9.3e-16 87.0 63 69.8
Cc07_g04120 Coffea canephora HOM05D007413 ORTHO05D009357 9.3e-16 87.0 107 56.1
Nitab4.5_0010051g0020 Nicotiana tabacum HOM05D007413 ORTHO05D009357 9.3e-16 87.0 81 61.7
Lj2g0007962 Lotus japonicus HOM05D007413 ORTHO05D009357 1.6e-15 86.3 67 61.2
CANSAT64G0406 Cannabis sativa HOM05D007413 ORTHO05D009357 6.0e-15 84.3 108 51.9
Sopen02g033450 Solanum pennellii HOM05D007413 ORTHO05D009357 7.9e-15 84.0 104 55.8
CSS0018963 Camellia sinensis var. sinensis HOM05D007413 ORTHO05D009357 1.3e-14 83.2 105 51.4
SalBow1G6503 Salvia bowleyana HOM05D007413 ORTHO05D009357 1.8e-14 82.8 52 76.9
SalBow1G0329 Salvia bowleyana HOM05D007413 ORTHO05D009357 3.9e-14 81.6 58 67.2
Potri.004G119600 Populus trichocarpa HOM05D007413 ORTHO05D009357 8.7e-14 80.5 59 71.2
Potri.017G093000 Populus trichocarpa HOM05D007413 ORTHO05D009357 1.9e-13 79.3 59 72.9
Aqoxy3G03598 Aquilegia oxysepala HOM05D007413 ORTHO05D009357 4.3e-13 78.2 105 50.5
PGSC0003DMG400025144 Solanum tuberosum HOM05D007413 ORTHO05D009357 4.3e-13 78.2 109 46.8
Nn3g17420 Nelumbo nucifera HOM05D007413 ORTHO05D009357 5.6e-13 77.8 105 44.8
CiPaw.03G089400 Carya illinoinensis HOM05D007413 ORTHO05D009357 1.3e-12 76.6 112 46.4
MD09G1064600 Malus domestica HOM05D007413 ORTHO05D009357 1.3e-12 76.6 109 48.6
Manes.01G097200 Manihot esculenta HOM05D007413 ORTHO05D009357 1.3e-12 76.6 109 50.5
Oeu007062.1 Olea europaea HOM05D007413 ORTHO05D009357 1.3e-12 76.6 91 52.7
VMungo0464G1276 Vigna mungo HOM05D007413 ORTHO05D009357 1.3e-12 76.6 101 45.5
Manes.02G054200 Manihot esculenta HOM05D007413 ORTHO05D009357 1.6e-12 76.3 94 54.3
Lalb_Chr06g0174991 Lupinus albus HOM05D007413 ORTHO05D009357 2.1e-12 75.9 61 63.9
Prupe.3G256400 Prunus persica HOM05D007413 ORTHO05D009357 2.8e-12 75.5 59 69.5
MELO3C022028.2 Cucumis melo HOM05D007413 ORTHO05D009357 3.7e-12 75.1 110 47.3
Oeu010247.1 Olea europaea HOM05D007413 ORTHO05D009357 3.7e-12 75.1 87 48.3
Solyc02g066970.1 Solanum lycopersicum HOM05D007413 ORTHO05D009357 3.7e-12 75.1 109 45.0
ClCG07G007410 Citrullus lanatus HOM05D007413 ORTHO05D009357 6.2e-12 74.3 96 47.9
QL02p067998 Quercus lobata HOM05D007413 ORTHO05D009357 1.1e-11 73.6 95 50.5
Lsat_1_v5_gn_2_87601 Lactuca sativa HOM05D007413 ORTHO05D009357 1.4e-11 73.2 113 46.9
MD17G1057900 Malus domestica HOM05D007413 ORTHO05D009357 1.8e-11 72.8 101 50.5
Sabra04G0069100 Salix brachista HOM05D007413 ORTHO05D009357 2.4e-11 72.4 64 60.9
Sopen02g016170 Solanum pennellii HOM05D007413 ORTHO05D009357 3.1e-11 72.0 109 44.0
Migut.H00635 Erythranthe guttata HOM05D007413 ORTHO05D009357 4.0e-11 71.6 100 49.0
Nn4g23392 Nelumbo nucifera HOM05D007413 ORTHO05D009357 4.0e-11 71.6 105 42.9
Phvul.004G035200 Phaseolus vulgaris HOM05D007413 ORTHO05D009357 6.9e-11 70.9 118 42.4
Sabra17G0082000 Salix brachista HOM05D007413 ORTHO05D009357 6.9e-11 70.9 99 51.5
CAN.G398.10 Capsicum annuum HOM05D007413 ORTHO05D009357 1.2e-10 70.1 76 47.4
Lsat_1_v5_gn_4_171221 Lactuca sativa HOM05D007413 ORTHO05D009357 1.5e-10 69.7 103 48.5
Glyma.13G057000 Glycine max HOM05D007413 ORTHO05D009357 2.0e-10 69.3 104 44.2
Nitab4.5_0005916g0020 Nicotiana tabacum HOM05D007413 ORTHO05D009357 2.6e-10 68.9 80 53.8
Cpa.g.sc3362.1 Carica papaya HOM05D007413 ORTHO05D009357 3.4e-10 68.6 69 55.1
Lalb_Chr02g0158971 Lupinus albus HOM05D007413 ORTHO05D009357 3.4e-10 68.6 109 43.1
FvH4_6g47010 Fragaria vesca HOM05D007413 ORTHO05D009357 7.6e-10 67.4 65 55.4
FAN09G1793 Fragaria x ananassa HOM05D007413 ORTHO05D009357 7.6e-10 67.4 65 55.4
FAN14G4532 Fragaria x ananassa HOM05D007413 ORTHO05D009357 7.6e-10 67.4 65 55.4
SGA_v2.0_scaffold148G36473 Striga asiatica HOM05D007413 ORTHO05D009357 7.6e-10 67.4 93 46.2
TWI34G0597 Tripterygium wilfordii HOM05D007413 ORTHO05D009357 7.6e-10 67.4 98 46.9
Psat1g067640 Pisum sativum HOM05D007413 ORTHO05D009357 1.0e-09 67.0 62 58.1
Ciclev10013609m.g Citrus clementina HOM05D007413 ORTHO05D009357 1.7e-09 66.2 66 57.6
ClCG11G004700 Citrullus lanatus HOM05D007413 ORTHO05D009357 2.2e-09 65.9 106 45.3
FAN02G2783 Fragaria x ananassa HOM05D007413 ORTHO05D009357 2.2e-09 65.9 65 55.4
unitig_62.g23378 Utricularia gibba HOM05D007413 ORTHO05D009357 2.2e-09 65.9 90 46.7
FAN05G2048 Fragaria x ananassa HOM05D007413 ORTHO05D009357 3.8e-09 65.1 63 57.1
Eucgr.I02025 Eucalyptus grandis HOM05D007413 ORTHO05D009357 4.9e-09 64.7 66 54.5
AL7G51220 Arabidopsis lyrata HOM05D007413 ORTHO05D009357 6.5e-09 64.3 83 49.4
Rhsim08G0074700 Rhododendron simsii HOM05D007413 ORTHO05D009357 6.5e-09 64.3 39 84.6
TPR.G10008 Trifolium pratense HOM05D007413 ORTHO05D009357 8.4e-09 63.9 89 42.7
COL.COLO4_00052 Corchorus olitorius HOM05D007413 ORTHO05D009357 1.1e-08 63.5 60 58.3
Thecc.04G093400 Theobroma cacao HOM05D007413 ORTHO05D009357 1.1e-08 63.5 102 39.2
CDE10G0699 Ceratophyllum demersum HOM05D007413 ORTHO05D009357 1.4e-08 63.2 90 43.3
MELO3C024851.2 Cucumis melo HOM05D007413 ORTHO05D009357 1.4e-08 63.2 97 40.2
Sed0019528 Sechium edule HOM05D007413 ORTHO05D009357 1.4e-08 63.2 103 43.7
SGA_v2.0_scaffold52G19169 Striga asiatica HOM05D007413 ORTHO05D009357 1.9e-08 62.8 95 44.2
Medtr6g015150 Medicago truncatula HOM05D007413 ORTHO05D009357 4.2e-08 61.6 53 58.5
BcaC02g09685 Brassica carinata HOM05D007413 ORTHO05D009357 5.5e-08 61.2 69 49.3
C04p45600 Brassica napus HOM05D007413 ORTHO05D009357 5.5e-08 61.2 69 49.3
BolC4t26142H Brassica oleracea HOM05D007413 ORTHO05D009357 5.5e-08 61.2 69 49.3
DCAR_011043 Daucus carota HOM05D007413 ORTHO05D009357 9.3e-08 60.5 102 37.3
Duzib147G0133 Durio zibethinus HOM05D007413 ORTHO05D009357 9.3e-08 60.5 97 40.2
Thhalv10027993m.g Eutrema salsugineum HOM05D007413 ORTHO05D009357 1.6e-07 59.7 68 51.5
Lalb_Chr21g0318381 Lupinus albus HOM05D007413 ORTHO05D009357 1.6e-07 59.7 60 55.0
Aa31LG2G3920 Aethionema arabicum HOM05D007413 ORTHO05D009357 2.7e-07 58.9 98 39.8
AT3G29370 Arabidopsis thaliana HOM05D007413 ORTHO05D009357 3.5e-07 58.5 90 42.2
AL5G19460 Arabidopsis lyrata HOM05D007413 ORTHO05D009357 4.6e-07 58.2 98 37.8
AT5G39240 Arabidopsis thaliana HOM05D007413 ORTHO05D009357 4.6e-07 58.2 67 50.7
Carub.0007s3668 Capsella rubella HOM05D007413 ORTHO05D009357 7.9e-07 57.4 94 39.4
ATR0064G025 Amborella trichopoda HOM05D007413 ORTHO05D009357 1.0e-06 57.0 72 45.8
BcaB06g27281 Brassica carinata HOM05D007413 ORTHO05D009357 1.0e-06 57.0 107 37.4
CARHR263170 Cardamine hirsuta HOM05D007413 ORTHO05D009357 1.0e-06 57.0 117 36.8
Gorai.012G049200 Gossypium raimondii HOM05D007413 ORTHO05D009357 1.3e-06 56.6 101 41.6
A04p11950 Brassica napus HOM05D007413 ORTHO05D009357 1.8e-06 56.2 118 38.1
BraA04t16860Z Brassica rapa HOM05D007413 ORTHO05D009357 1.8e-06 56.2 118 38.1
RcHm_v2.0_Chr2g0166071 Rosa chinensis HOM05D007413 ORTHO05D009357 1.8e-06 56.2 60 55.0
Gohir.D04G043900 Gossypium hirsutum HOM05D007413 ORTHO05D009357 3.0e-06 55.5 101 41.6
PGR004G0469 Punica granatum HOM05D007413 ORTHO05D009357 3.0e-06 55.5 116 39.7
Gohir.A05G371900 Gossypium hirsutum HOM05D007413 ORTHO05D009357 3.9e-06 55.1 101 40.6
CDE10G0216 Ceratophyllum demersum HOM05D001577 ORTHO05D008017 5.1e-06 54.7 101 40.6


User provided reference genes

Program Settings