Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009890 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 0.0e+00 4411.3 2201 100.0
CSS0043134 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 0.0e+00 4370.8 2227 98.4
Actinidia06086 Actinidia chinensis HOM05D005746 ORTHO05D007105 0.0e+00 3457.2 2227 78.9
Dinv33748 Davidia involucrata HOM05D005746 ORTHO05D007105 0.0e+00 3453.3 2229 78.8
Rhsim10G0040100 Rhododendron simsii HOM05D005746 ORTHO05D007105 0.0e+00 3381.3 2253 76.7
vmacro17103 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 3316.2 2232 75.5
vmacro05704 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 3314.6 2232 75.5
vmacro05746 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 3181.3 2232 72.9
TAR374G0083 Trochodendron aralioides HOM05D005746 ORTHO05D007105 0.0e+00 2966.4 2233 68.3
CiPaw.03G027900 Carya illinoinensis HOM05D005746 ORTHO05D007105 0.0e+00 2907.9 2236 67.3
Haze_14549 Corylus avellana HOM05D005746 ORTHO05D007105 0.0e+00 2900.2 2236 67.1
Cfa007537 Carpinus fangiana HOM05D005746 ORTHO05D007105 0.0e+00 2898.2 2236 66.9
QL02p081653 Quercus lobata HOM05D005746 ORTHO05D007105 0.0e+00 2875.9 2240 66.6
Atru.chr8.140 Acer truncatum HOM05D005746 ORTHO05D007105 0.0e+00 2869.3 2235 66.1
Duzib147G0034 Durio zibethinus HOM05D005746 ORTHO05D007105 0.0e+00 2831.6 2238 65.6
MD09G1049900 Malus domestica HOM05D005746 ORTHO05D007105 0.0e+00 2831.6 2236 65.2
vmacro22549 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2826.6 2325 64.9
TWI34G0228 Tripterygium wilfordii HOM05D005746 ORTHO05D007105 0.0e+00 2819.3 2241 65.1
MD17G1050300 Malus domestica HOM05D005746 ORTHO05D007105 0.0e+00 2815.8 2235 64.8
Nn4g23132 Nelumbo nucifera HOM05D005746 ORTHO05D007105 0.0e+00 2812.3 2212 65.6
RcHm_v2.0_Chr2g0168711 Rosa chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2800.4 2236 64.7
COL.COLO4_33291 Corchorus olitorius HOM05D005746 ORTHO05D007105 0.0e+00 2796.1 2236 65.0
Gorai.006G018000 Gossypium raimondii HOM05D005746 ORTHO05D007105 0.0e+00 2778.4 2236 64.8
Cc07_g03290 Coffea canephora HOM05D005746 ORTHO05D007105 0.0e+00 2772.3 2237 64.1
Gohir.A09G017100 Gossypium hirsutum HOM05D005746 ORTHO05D007105 0.0e+00 2758.0 2237 64.5
Potri.004G128601 Populus trichocarpa HOM05D005746 ORTHO05D007105 0.0e+00 2754.9 2244 64.3
FvH4_6g48870 Fragaria vesca HOM05D005746 ORTHO05D007105 0.0e+00 2734.1 2235 63.7
FAN02G0556 Fragaria x ananassa HOM05D005746 ORTHO05D007105 0.0e+00 2732.2 2237 63.3
DCAR_021658 Daucus carota HOM05D005746 ORTHO05D007105 0.0e+00 2713.7 2238 63.2
Oeu060938.1 Olea europaea HOM05D005746 ORTHO05D007105 0.0e+00 2702.5 2254 62.7
Nitab4.5_0002923g0020 Nicotiana tabacum HOM05D005746 ORTHO05D007105 0.0e+00 2681.7 2233 63.4
Sabra04G0090500 Salix brachista HOM05D005746 ORTHO05D007105 0.0e+00 2666.7 2251 62.5
MSTRG.3234 Avicennia marina HOM05D005746 ORTHO05D007105 0.0e+00 2660.9 2239 62.3
Aqoxy3G00678 Aquilegia oxysepala HOM05D005746 ORTHO05D007105 0.0e+00 2658.6 2238 62.6
Solyc03g062650.3 Solanum lycopersicum HOM05D005746 ORTHO05D007105 0.0e+00 2655.6 2232 62.4
CAN.G1205.1 Capsicum annuum HOM05D005746 ORTHO05D007105 0.0e+00 2652.5 2233 62.5
Sopen03g014980 Solanum pennellii HOM05D005746 ORTHO05D007105 0.0e+00 2649.8 2237 62.4
Peaxi162Scf00451g00821 Petunia axillaris HOM05D005746 ORTHO05D007105 0.0e+00 2642.8 2252 62.3
Sc14g0005950 Simmondsia chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2641.3 2236 62.0
ClCG10G014980 Citrullus lanatus HOM05D005746 ORTHO05D007105 0.0e+00 2632.4 2233 62.0
Hund15611 Selenicereus undatus HOM05D005746 ORTHO05D007105 0.0e+00 2628.2 2234 61.7
MELO3C009878.2 Cucumis melo HOM05D005746 ORTHO05D007105 0.0e+00 2608.6 2235 61.3
PSO017G1620 Papaver somniferum HOM05D005746 ORTHO05D007105 0.0e+00 2592.8 2236 60.8
Sed0005323 Sechium edule HOM05D005746 ORTHO05D007105 0.0e+00 2592.8 2233 60.6
Lj2g0006836 Lotus japonicus HOM05D005746 ORTHO05D007105 0.0e+00 2589.7 2240 61.0
Eucgr.J01361 Eucalyptus grandis HOM05D005746 ORTHO05D007105 0.0e+00 2587.0 2232 60.6
MBI05_g35450_MAGBIO Magnolia biondii HOM05D005746 ORTHO05D007105 0.0e+00 2587.0 2268 61.3
Migut.H00912 Erythranthe guttata HOM05D005746 ORTHO05D007105 0.0e+00 2577.0 2239 60.9
HanXRQChr14g0439111 Helianthus annuus HOM05D005746 ORTHO05D007105 0.0e+00 2574.3 2246 61.3
Ciclev10010889m.g Citrus clementina HOM05D005746 ORTHO05D007105 0.0e+00 2572.3 2249 61.3
ECA246G0262 Erigeron canadensis HOM05D005746 ORTHO05D007105 0.0e+00 2569.3 2240 61.0
arahy.Tifrunner.gnm1.ann1.C4FZ3V Arachis hypogaea HOM05D005746 ORTHO05D007105 0.0e+00 2556.6 2247 59.9
arahy.Tifrunner.gnm1.ann1.IK9RDG Arachis hypogaea HOM05D005746 ORTHO05D007105 0.0e+00 2549.2 2244 59.8
SGA_v2.0_scaffold1G00328 Striga asiatica HOM05D005746 ORTHO05D007105 0.0e+00 2541.5 2249 60.1
Lalb_Chr06g0175391 Lupinus albus HOM05D005746 ORTHO05D007105 0.0e+00 2537.3 2241 60.1
TPR.G10375 Trifolium pratense HOM05D005746 ORTHO05D007105 0.0e+00 2528.8 2249 59.7
THA.LOC104823176 Tarenaya hassleriana HOM05D005746 ORTHO05D007105 0.0e+00 2523.4 2247 59.6
EL10Ac2g02971 Beta vulgaris HOM05D005746 ORTHO05D007105 0.0e+00 2521.5 2233 60.6
Ca_04277_v3 Cicer arietinum L. HOM05D005746 ORTHO05D007105 0.0e+00 2516.5 2248 59.6
Psat1g074560 Pisum sativum HOM05D005746 ORTHO05D007105 0.0e+00 2507.6 2241 59.5
Glyma.19G021700 Glycine max HOM05D005746 ORTHO05D007105 0.0e+00 2504.2 2244 59.6
Medtr6g011760 Medicago truncatula HOM05D005746 ORTHO05D007105 0.0e+00 2498.8 2239 59.5
AUR62034394 Chenopodium quinoa HOM05D005746 ORTHO05D007105 0.0e+00 2491.8 2234 60.2
AUR62039819 Chenopodium quinoa HOM05D005746 ORTHO05D007105 0.0e+00 2491.1 2236 60.1
Phvul.004G028000 Phaseolus vulgaris HOM05D005746 ORTHO05D007105 0.0e+00 2483.4 2241 59.1
VMungo0464G0495 Vigna mungo HOM05D005746 ORTHO05D007105 0.0e+00 2482.6 2241 59.2
PGR083G2853 Punica granatum HOM05D005746 ORTHO05D007105 0.0e+00 2481.1 2238 58.7
Aa31LG2G4330 Aethionema arabicum HOM05D005746 ORTHO05D007105 0.0e+00 2434.4 2273 57.9
C07p37790 Brassica napus HOM05D005746 ORTHO05D007105 0.0e+00 2396.3 2241 58.4
BolC7t44300H Brassica oleracea HOM05D005746 ORTHO05D007105 0.0e+00 2396.3 2241 58.4
Sp2g17500 Schrenkiella parvula HOM05D005746 ORTHO05D007105 0.0e+00 2395.2 2249 58.1
Lsat_1_v5_gn_3_100801 Lactuca sativa HOM05D005746 ORTHO05D007105 0.0e+00 2393.6 2252 58.4
A06p40280 Brassica napus HOM05D005746 ORTHO05D007105 0.0e+00 2389.8 2237 58.2
BraA06t26946Z Brassica rapa HOM05D005746 ORTHO05D007105 0.0e+00 2389.8 2237 58.2
AL5G36280 Arabidopsis lyrata HOM05D005746 ORTHO05D007105 0.0e+00 2387.8 2247 57.9
Prupe.3G268800 Prunus persica HOM05D005746 ORTHO05D007105 0.0e+00 2386.3 1825 66.4
Thhalv10003503m.g Eutrema salsugineum HOM05D005746 ORTHO05D007105 0.0e+00 2379.4 2251 58.1
AT3G55160 Arabidopsis thaliana HOM05D005746 ORTHO05D007105 0.0e+00 2377.1 2252 57.9
CARHR165190 Cardamine hirsuta HOM05D005746 ORTHO05D007105 0.0e+00 2358.2 2243 57.6
Thecc.04G080100 Theobroma cacao HOM05D005746 ORTHO05D007105 0.0e+00 2349.3 1824 66.4
FAN09G1953 Fragaria x ananassa HOM05D005746 ORTHO05D007105 0.0e+00 2335.5 1898 63.4
BcaC06g33649 Brassica carinata HOM05D005746 ORTHO05D007105 0.0e+00 2281.5 2241 56.6
Manes.15G175000 Manihot esculenta HOM05D005746 ORTHO05D007105 0.0e+00 2275.0 1838 65.0
Carub.0005s2180 Capsella rubella HOM05D005746 ORTHO05D007105 0.0e+00 2216.0 2072 58.3
ATR0564G261 Amborella trichopoda HOM05D005746 ORTHO05D007105 0.0e+00 2199.5 2331 52.5
GSVIVG01011388001 Vitis vinifera HOM05D005746 ORTHO05D007105 0.0e+00 2177.5 2241 54.4
Gohir.D09G015800 Gossypium hirsutum HOM05D005746 ORTHO05D007105 0.0e+00 2152.1 1716 65.6
Zm00001eb414960 Zea mays HOM05D005746 ORTHO05D007105 0.0e+00 2121.3 2253 52.8
HPP92_011243 Vanilla planifolia HOM05D005746 ORTHO05D007105 0.0e+00 2041.5 2238 52.0
Cpa.g.sc14.10 Carica papaya HOM05D005746 ORTHO05D007105 0.0e+00 1890.2 1424 68.4
SEGI_38380 Sequoiadendron giganteum HOM05D005746 ORTHO05D007105 0.0e+00 1788.1 2388 43.8
Lju41C18T12 Lonicera japonica HOM05D005746 ORTHO05D007105 0.0e+00 1694.1 1393 65.0
Os08g0169700 Oryza sativa ssp. japonica HOM05D005746 ORTHO05D007105 0.0e+00 1598.2 1697 52.2
Mapoly0207s0007 Marchantia polymorpha HOM05D005746 ORTHO05D007105 0.0e+00 1449.9 2359 40.0
unitig_0.g531 Utricularia gibba HOM05D005746 ORTHO05D007105 0.0e+00 1410.6 2196 40.7
vmacro05484 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 1389.8 1068 68.6
Pp3c6_28730 Physcomitrium patens HOM05D005746 ORTHO05D007105 0.0e+00 1381.7 2349 37.8
CsaV3_3G041540 Cucumis sativus L. HOM05D005746 ORTHO05D007105 0.0e+00 1302.3 1021 65.3
VMungo0464G0208 Vigna mungo HOM05D005746 ORTHO05D007105 0.0e+00 1292.3 1127 60.9
SMO367G0809 Selaginella moellendorffii HOM05D005746 ORTHO05D007105 0.0e+00 1265.8 2260 36.7
Duzib147G0404 Durio zibethinus HOM05D005746 ORTHO05D007105 0.0e+00 1242.6 943 67.1
CsaV3_3G041530 Cucumis sativus L. HOM05D005746 ORTHO05D007105 0.0e+00 1226.8 1204 56.1
vmacro05485 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 1160.2 1019 62.7
CDE09G0909 Ceratophyllum demersum HOM05D005746 ORTHO05D007105 0.0e+00 1121.7 1413 47.5
Lju41A18T48 Lonicera japonica HOM05D005746 ORTHO05D007105 0.0e+00 1091.6 790 71.9
CBR_g50021 Chara braunii HOM05D005746 ORTHO05D007105 3.1e-259 900.2 3045 27.4
CDE09G1403 Ceratophyllum demersum HOM05D005746 ORTHO05D007105 2.6e-229 800.8 735 58.8
BcaNung05131 Brassica carinata HOM05D005746 ORTHO05D007105 1.9e-224 784.6 880 50.0
AagrBONN_evm.TU.Sc2ySwM_369.379 Anthoceros agrestis HOM05D005746 ORTHO05D007105 2.7e-202 711.1 1366 36.3
BcaC06g33650 Brassica carinata HOM05D005746 ORTHO05D007105 5.5e-179 633.6 1002 42.3
MCO11G207 Micromonas commoda HOM05D005746 ORTHO05D007105 7.7e-141 506.9 2367 25.3
Cpa.g.sc14.9 Carica papaya HOM05D005746 ORTHO05D007105 9.5e-139 500.0 437 57.2
Gohir.D09G015833 Gossypium hirsutum HOM05D005746 ORTHO05D007105 6.0e-117 427.6 377 58.9
CAN.G284.10 Capsicum annuum HOM05D005746 ORTHO05D007105 3.3e-91 342.0 338 54.4
CAN.G691.2 Capsicum annuum HOM05D005746 ORTHO05D007105 1.5e-80 306.6 314 52.9
Migut.L00530 Erythranthe guttata HOM05D005746 ORTHO05D007105 3.9e-76 292.0 742 32.5
CARHR159400 Cardamine hirsuta HOM05D005746 ORTHO05D007105 2.1e-74 286.2 290 56.6
CAN.G65.185 Capsicum annuum HOM05D005746 ORTHO05D007105 7.6e-72 277.7 326 48.8
CAN.G525.35 Capsicum annuum HOM05D005746 ORTHO05D007105 5.0e-71 275.0 234 60.7
CAN.G697.12 Capsicum annuum HOM05D005746 ORTHO05D007105 9.7e-59 234.2 234 53.8
CAN.G352.19 Capsicum annuum HOM05D005746 ORTHO05D007105 1.8e-57 229.9 282 46.5
CsaV3_UNG114880 Cucumis sativus L. HOM05D005746 ORTHO05D007105 1.6e-53 216.9 175 66.3
CAN.G385.2 Capsicum annuum HOM05D005746 ORTHO05D007105 1.1e-41 177.6 224 46.0
Lj2g0022018 Lotus japonicus HOM05D005746 ORTHO05D007105 2.7e-40 172.9 140 65.0
CAN.G853.24 Capsicum annuum HOM05D005746 ORTHO05D007105 2.1e-37 163.3 144 60.4
VMungo1127G1036 Vigna mungo HOM05D005746 ORTHO05D007105 1.5e-35 157.1 95 82.1
AagrBONN_evm.TU.Sc2ySwM_369.378 Anthoceros agrestis HOM05D005746 ORTHO05D007105 4.4e-35 155.6 486 27.2
Gohir.A11G290200 Gossypium hirsutum HOM05D005746 ORTHO05D007105 6.1e-29 135.2 117 58.1
Cre15.g642050 Chlamydomonas reinhardtii HOM05D005746 ORTHO05D007105 2.8e-26 126.3 254 33.5
VMungo1127G1975 Vigna mungo HOM05D005746 ORTHO05D007105 4.1e-25 122.5 111 63.1
VMungo0331G1774 Vigna mungo HOM05D005746 ORTHO05D007105 2.3e-23 116.7 102 57.8
AagrBONN_evm.TU.Sc2ySwM_369.374 Anthoceros agrestis HOM05D005746 ORTHO05D007105 1.0e-15 91.3 284 28.5
Cfa022176 Carpinus fangiana HOM05D005746 ORTHO05D125765 1.2e-08 67.8 570 20.2


User provided reference genes

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