Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009879 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 8.3e-230 800.0 412 100.0
Actinidia39193 Actinidia chinensis HOM05D003740 ORTHO05D004611 6.6e-195 684.1 423 84.9
Rhsim03G0031000 Rhododendron simsii HOM05D003740 ORTHO05D004611 2.1e-193 679.1 423 84.9
Dinv05312 Davidia involucrata HOM05D003740 ORTHO05D004611 8.4e-190 667.2 431 81.9
Dinv34246 Davidia involucrata HOM05D003740 ORTHO05D004611 9.3e-189 663.7 430 82.1
Actinidia38142 Actinidia chinensis HOM05D003740 ORTHO05D004611 2.7e-188 662.1 424 81.6
CSS0019779 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 1.0e-187 660.2 393 86.3
Peaxi162Scf00130g01015 Petunia axillaris HOM05D003740 ORTHO05D004611 6.9e-184 647.5 430 78.1
Prupe.7G050100 Prunus persica HOM05D003740 ORTHO05D004611 4.6e-180 634.8 425 77.2
GSVIVG01033552001 Vitis vinifera HOM05D003740 ORTHO05D004611 6.0e-180 634.4 390 82.8
RcHm_v2.0_Chr3g0484361 Rosa chinensis HOM05D003740 ORTHO05D004611 1.0e-179 633.6 425 77.2
Sopen04g008590 Solanum pennellii HOM05D003740 ORTHO05D004611 3.0e-179 632.1 428 77.3
MD12G1086200 Malus domestica HOM05D003740 ORTHO05D004611 3.3e-178 628.6 427 76.8
Prupe.1G032300 Prunus persica HOM05D003740 ORTHO05D004611 5.6e-178 627.9 425 76.5
TWI53G1619 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 7.4e-178 627.5 433 76.4
MD14G1080600 Malus domestica HOM05D003740 ORTHO05D004611 6.2e-177 624.4 431 76.1
VMungo0720G0943 Vigna mungo HOM05D003740 ORTHO05D004611 6.2e-177 624.4 426 77.2
Lj5g0015883 Lotus japonicus HOM05D003740 ORTHO05D004611 8.1e-177 624.0 423 76.8
TWI77G0796 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 8.1e-177 624.0 433 76.4
FAN05G1357 Fragaria x ananassa HOM05D003740 ORTHO05D004611 2.4e-176 622.5 423 76.1
FAN09G1292 Fragaria x ananassa HOM05D003740 ORTHO05D004611 2.4e-176 622.5 424 76.4
FvH4_6g24760 Fragaria vesca HOM05D003740 ORTHO05D004611 3.1e-176 622.1 424 76.4
ClCG04G004010 Citrullus lanatus HOM05D003740 ORTHO05D004611 6.9e-176 620.9 430 76.0
Eucgr.A02296 Eucalyptus grandis HOM05D003740 ORTHO05D004611 9.0e-176 620.5 431 75.9
HanXRQChr10g0277771 Helianthus annuus HOM05D003740 ORTHO05D004611 1.2e-175 620.2 423 77.3
PGR004G2716 Punica granatum HOM05D003740 ORTHO05D004611 1.5e-175 619.8 432 76.6
CsaV3_4G027630 Cucumis sativus L. HOM05D003740 ORTHO05D004611 2.6e-175 619.0 426 76.3
Migut.K00119 Erythranthe guttata HOM05D003740 ORTHO05D004611 2.6e-175 619.0 423 76.4
Manes.08G053600 Manihot esculenta HOM05D003740 ORTHO05D004611 3.4e-175 618.6 426 75.4
MELO3C014202.2 Cucumis melo HOM05D003740 ORTHO05D004611 4.5e-175 618.2 426 76.3
Phvul.007G249500 Phaseolus vulgaris HOM05D003740 ORTHO05D004611 4.5e-175 618.2 426 76.8
Glyma.02G190700 Glycine max HOM05D003740 ORTHO05D004611 1.0e-174 617.1 426 76.1
Glyma.10G105900 Glycine max HOM05D003740 ORTHO05D004611 1.7e-174 616.3 390 80.8
Thecc.05G145300 Theobroma cacao HOM05D003740 ORTHO05D004611 1.7e-174 616.3 424 76.9
Ca_25790_v3 Cicer arietinum L. HOM05D003740 ORTHO05D004611 2.2e-174 615.9 423 76.6
Medtr3g045150 Medicago truncatula HOM05D003740 ORTHO05D004611 2.9e-174 615.5 423 75.9
Ciclev10005020m.g Citrus clementina HOM05D003740 ORTHO05D004611 6.5e-174 614.4 429 75.5
Sed0006234 Sechium edule HOM05D003740 ORTHO05D004611 6.5e-174 614.4 431 75.4
Migut.J01706 Erythranthe guttata HOM05D003740 ORTHO05D004611 8.4e-174 614.0 424 75.9
Medtr0012s0090 Medicago truncatula HOM05D003740 ORTHO05D004611 8.4e-174 614.0 423 75.9
TWI74G0940 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 8.4e-174 614.0 433 75.5
RcHm_v2.0_Chr3g0484511 Rosa chinensis HOM05D003740 ORTHO05D004611 1.4e-173 613.2 425 75.8
MSTRG.10801 Avicennia marina HOM05D003740 ORTHO05D004611 4.2e-173 611.7 425 74.8
MSTRG.26143 Avicennia marina HOM05D003740 ORTHO05D004611 4.2e-173 611.7 424 75.2
Psat6g118200 Pisum sativum HOM05D003740 ORTHO05D004611 7.1e-173 610.9 423 75.2
arahy.Tifrunner.gnm1.ann1.0DR8LC Arachis hypogaea HOM05D003740 ORTHO05D004611 1.2e-172 610.1 404 77.0
Cfa016754 Carpinus fangiana HOM05D003740 ORTHO05D004611 1.2e-172 610.1 426 76.3
Gohir.D09G116000 Gossypium hirsutum HOM05D003740 ORTHO05D004611 1.2e-172 610.1 425 76.0
Gohir.A09G119800 Gossypium hirsutum HOM05D003740 ORTHO05D004611 2.7e-172 609.0 425 76.0
Haze_19750 Corylus avellana HOM05D003740 ORTHO05D004611 4.6e-172 608.2 426 76.1
FAN02G1973 Fragaria x ananassa HOM05D003740 ORTHO05D004611 1.3e-171 606.7 423 74.2
TPR.G19664 Trifolium pratense HOM05D003740 ORTHO05D004611 1.3e-171 606.7 427 75.2
Sed0013360 Sechium edule HOM05D003740 ORTHO05D004611 1.8e-171 606.3 427 74.9
QL07p005086 Quercus lobata HOM05D003740 ORTHO05D004611 3.9e-171 605.1 392 79.1
Solyc04g016520.3 Solanum lycopersicum HOM05D003740 ORTHO05D004611 8.7e-171 604.0 428 74.8
Lalb_Chr21g0316601 Lupinus albus HOM05D003740 ORTHO05D004611 4.3e-170 601.7 421 75.1
arahy.Tifrunner.gnm1.ann1.G7Z7YE Arachis hypogaea HOM05D003740 ORTHO05D004611 5.7e-170 601.3 405 76.3
Oeu006922.2 Olea europaea HOM05D003740 ORTHO05D004611 1.6e-169 599.7 422 75.1
CiPaw.09G042200 Carya illinoinensis HOM05D003740 ORTHO05D004611 2.8e-169 599.0 426 75.6
Atru.chr6.1381 Acer truncatum HOM05D003740 ORTHO05D004611 3.7e-169 598.6 423 75.2
Gorai.006G134300 Gossypium raimondii HOM05D003740 ORTHO05D004611 4.8e-169 598.2 423 75.4
Lalb_Chr02g0156411 Lupinus albus HOM05D003740 ORTHO05D004611 4.8e-169 598.2 421 74.8
Rhsim04G0107900 Rhododendron simsii HOM05D003740 ORTHO05D004611 4.8e-169 598.2 408 78.9
DCAR_020539 Daucus carota HOM05D003740 ORTHO05D004611 6.2e-169 597.8 408 77.0
PGSC0003DMG400012722 Solanum tuberosum HOM05D003740 ORTHO05D004611 1.4e-168 596.7 428 74.3
TAR636G0750 Trochodendron aralioides HOM05D003740 ORTHO05D004611 1.2e-167 593.6 405 76.5
Nn6g34910 Nelumbo nucifera HOM05D003740 ORTHO05D004611 1.5e-167 593.2 397 75.8
THA.LOC104816968 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 2.6e-167 592.4 423 72.8
Lsat_1_v5_gn_6_15201 Lactuca sativa HOM05D003740 ORTHO05D004611 3.4e-167 592.0 403 77.7
EL10Ac3g07158 Beta vulgaris HOM05D003740 ORTHO05D004611 5.8e-167 591.3 432 72.9
FAN14G5242 Fragaria x ananassa HOM05D003740 ORTHO05D004611 5.8e-167 591.3 404 76.7
unitig_748.g7227 Utricularia gibba HOM05D003740 ORTHO05D004611 1.7e-166 589.7 407 75.7
ECA233G5682 Erigeron canadensis HOM05D003740 ORTHO05D004611 2.9e-166 589.0 419 75.7
THA.LOC104803288 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 1.4e-165 586.6 428 72.4
BraA05t19226Z Brassica rapa HOM05D003740 ORTHO05D004611 4.2e-165 585.1 429 72.7
Nn7g37216 Nelumbo nucifera HOM05D003740 ORTHO05D004611 1.2e-164 583.6 406 73.9
Cc06_g18360 Coffea canephora HOM05D003740 ORTHO05D004611 1.6e-164 583.2 371 79.8
Duzib128G1723 Durio zibethinus HOM05D003740 ORTHO05D004611 1.6e-164 583.2 405 77.0
Sabra16G0047800 Salix brachista HOM05D003740 ORTHO05D004611 1.6e-164 583.2 393 75.6
A05p02310 Brassica napus HOM05D003740 ORTHO05D004611 2.7e-164 582.4 427 72.1
SGA_v2.0_scaffold105G30359 Striga asiatica HOM05D003740 ORTHO05D004611 4.6e-164 581.6 403 75.7
Ah.13g076780 Amaranthus hybridus HOM05D003740 ORTHO05D004611 1.0e-163 580.5 429 70.9
AL5G38710 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 1.3e-163 580.1 428 72.2
Atru.chr1.1193 Acer truncatum HOM05D003740 ORTHO05D004611 1.8e-163 579.7 393 77.9
BcaC02g09904 Brassica carinata HOM05D003740 ORTHO05D004611 1.8e-163 579.7 423 72.3
C04p35340 Brassica napus HOM05D003740 ORTHO05D004611 1.8e-163 579.7 423 72.3
BolC4t25088H Brassica oleracea HOM05D003740 ORTHO05D004611 1.8e-163 579.7 423 72.3
BolC4t21915H Brassica oleracea HOM05D003740 ORTHO05D004611 2.3e-163 579.3 425 72.5
C04p02750 Brassica napus HOM05D003740 ORTHO05D004611 8.7e-163 577.4 425 72.5
Lj2A390G27 Lonicera japonica HOM05D003740 ORTHO05D004611 1.5e-162 576.6 413 75.5
Potri.006G045700 Populus trichocarpa HOM05D003740 ORTHO05D004611 1.9e-162 576.2 430 70.2
AT2G41490 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 2.5e-162 575.9 433 70.7
BcaNung06793 Brassica carinata HOM05D003740 ORTHO05D004611 4.3e-162 575.1 425 72.5
C08p32520 Brassica napus HOM05D003740 ORTHO05D004611 5.7e-162 574.7 426 72.1
BolC8t50867H Brassica oleracea HOM05D003740 ORTHO05D004611 5.7e-162 574.7 426 72.1
A09p50150 Brassica napus HOM05D003740 ORTHO05D004611 9.7e-162 573.9 426 71.8
BraA09t40467Z Brassica rapa HOM05D003740 ORTHO05D004611 9.7e-162 573.9 426 71.8
AL4G39580 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 1.6e-161 573.2 433 70.7
AT3G57220 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 1.6e-161 573.2 428 71.0
BcaB02g08329 Brassica carinata HOM05D003740 ORTHO05D004611 1.6e-161 573.2 390 75.6
PSO384G1999 Papaver somniferum HOM05D003740 ORTHO05D004611 2.8e-161 572.4 423 71.9
BraA04t16052Z Brassica rapa HOM05D003740 ORTHO05D004611 3.7e-161 572.0 426 72.1
Carub.0004s2379 Capsella rubella HOM05D003740 ORTHO05D004611 8.2e-161 570.9 430 70.9
Thhalv10005999m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 1.1e-160 570.5 423 71.4
CANSAT80G1617 Cannabis sativa HOM05D003740 ORTHO05D004611 1.8e-160 569.7 423 70.9
CARHR136610 Cardamine hirsuta HOM05D003740 ORTHO05D004611 1.8e-160 569.7 432 70.6
PSO339G5696 Papaver somniferum HOM05D003740 ORTHO05D004611 2.4e-160 569.3 423 71.4
Sp4g23760 Schrenkiella parvula HOM05D003740 ORTHO05D004611 2.4e-160 569.3 435 70.3
Thhalv10007732m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 3.1e-160 568.9 423 71.6
Thhalv10016688m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 3.1e-160 568.9 432 70.8
Lj1A1122T44 Lonicera japonica HOM05D003740 ORTHO05D004611 3.1e-160 568.9 433 73.0
Carub.0005s2403 Capsella rubella HOM05D003740 ORTHO05D004611 4.1e-160 568.5 428 71.3
CAN.G1237.3 Capsicum annuum HOM05D003740 ORTHO05D004611 5.3e-160 568.2 335 84.8
AUR62024529 Chenopodium quinoa HOM05D003740 ORTHO05D004611 9.0e-160 567.4 432 70.1
Aqoxy2G02041 Aquilegia oxysepala HOM05D003740 ORTHO05D004611 2.9e-158 562.4 431 69.4
AUR62026121 Chenopodium quinoa HOM05D003740 ORTHO05D004611 2.9e-158 562.4 431 70.1
CANSAT80G1359 Cannabis sativa HOM05D003740 ORTHO05D004611 1.2e-156 557.0 423 70.0
Aa31LG1G23510 Aethionema arabicum HOM05D003740 ORTHO05D004611 1.6e-156 556.6 431 68.4
Sc13g0001500 Simmondsia chinensis HOM05D003740 ORTHO05D004611 1.4e-155 553.5 409 69.9
CDE08G1337 Ceratophyllum demersum HOM05D003740 ORTHO05D004611 8.8e-155 550.8 354 78.2
SEGI_04340 Sequoiadendron giganteum HOM05D003740 ORTHO05D004611 2.0e-154 549.7 420 68.1
MBI13_g04792_MAGBIO Magnolia biondii HOM05D003740 ORTHO05D004611 3.3e-154 548.9 408 71.6
Potri.016G042100 Populus trichocarpa HOM05D003740 ORTHO05D004611 3.3e-154 548.9 381 74.3
Aa31LG10G12120 Aethionema arabicum HOM05D003740 ORTHO05D004611 1.8e-152 543.1 475 64.2
TPR.G2316 Trifolium pratense HOM05D003740 ORTHO05D004611 2.9e-150 535.8 393 71.0
Nitab4.5_0000826g0260 Nicotiana tabacum HOM05D003740 ORTHO05D004611 5.0e-150 535.0 439 67.9
Duzib106G0923 Durio zibethinus HOM05D003740 ORTHO05D004611 8.5e-150 534.3 424 70.5
SalBow1G2954 Salvia bowleyana HOM05D003740 ORTHO05D004611 1.4e-149 533.5 452 65.7
COL.COLO4_21300 Corchorus olitorius HOM05D003740 ORTHO05D004611 4.2e-149 531.9 379 72.8
A04p03820 Brassica napus HOM05D003740 ORTHO05D004611 2.1e-148 529.6 424 67.7
Os07g0661100 Oryza sativa ssp. japonica HOM05D003740 ORTHO05D004611 1.4e-144 516.9 378 68.0
RcHm_v2.0_Chr3g0484421 Rosa chinensis HOM05D003740 ORTHO05D004611 2.2e-142 509.6 419 66.3
TAR633G2274 Trochodendron aralioides HOM05D003740 ORTHO05D004611 6.5e-142 508.1 315 81.3
BcaC07g40064 Brassica carinata HOM05D003740 ORTHO05D004611 9.4e-141 504.2 322 79.2
Zm00001eb110840 Zea mays HOM05D003740 ORTHO05D004611 1.6e-140 503.4 424 63.0
Zm00001eb329870 Zea mays HOM05D003740 ORTHO05D004611 6.1e-140 501.5 393 64.9
DCAR_016970 Daucus carota HOM05D003740 ORTHO05D004611 1.4e-136 490.3 410 66.3
SMO364G0515 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 5.9e-135 485.0 374 65.5
Hund19125 Selenicereus undatus HOM05D003740 ORTHO05D004611 1.0e-134 484.2 438 63.2
Pp3c2_18380 Physcomitrium patens HOM05D003740 ORTHO05D004611 2.9e-134 482.6 430 61.2
ATR0782G053 Amborella trichopoda HOM05D003740 ORTHO05D004611 7.5e-130 468.0 353 70.8
Mapoly0120s0027 Marchantia polymorpha HOM05D003740 ORTHO05D004611 2.9e-126 456.1 427 56.4
AagrBONN_evm.TU.Sc2ySwM_344.2027 Anthoceros agrestis HOM05D003740 ORTHO05D004611 3.6e-124 449.1 393 60.3
Medtr8g446850 Medicago truncatula HOM05D003740 ORTHO05D004611 8.0e-124 448.0 371 67.1
TPR.G11551 Trifolium pratense HOM05D003740 ORTHO05D004611 5.9e-119 431.8 403 61.5
AUR62004393 Chenopodium quinoa HOM05D003740 ORTHO05D004611 3.6e-116 422.5 361 64.3
CARHR167400 Cardamine hirsuta HOM05D003740 ORTHO05D004611 3.0e-115 419.5 333 69.4
SHI12878 Sapria himalayana HOM05D003740 ORTHO05D004611 1.3e-113 414.1 422 54.5
vmacro09044 Vaccinium macrocarpon HOM05D003740 ORTHO05D004611 4.3e-109 399.1 241 84.6
AUR62022599 Chenopodium quinoa HOM05D003740 ORTHO05D004611 8.3e-105 384.8 324 63.6
SMO112G0012 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 3.3e-101 372.9 271 69.7
Sp5g05360 Schrenkiella parvula HOM05D003740 ORTHO05D004611 3.6e-92 342.8 231 75.8
AagrBONN_evm.TU.Sc2ySwM_368.1663 Anthoceros agrestis HOM05D003740 ORTHO05D004611 8.9e-91 338.2 406 47.3
Cre16.g663100 Chlamydomonas reinhardtii HOM05D003740 ORTHO05D004611 2.4e-88 330.1 418 46.2
CiPaw.10G036600 Carya illinoinensis HOM05D003740 ORTHO05D004611 2.1e-87 327.0 211 81.0
CBR_g48687 Chara braunii HOM05D003740 ORTHO05D004611 6.2e-84 315.5 270 58.1
PRCOL_00006546 Prasinoderma coloniale HOM05D003740 ORTHO05D004611 6.8e-83 312.0 390 47.4
SEGI_25729 Sequoiadendron giganteum HOM05D003740 ORTHO05D004611 8.9e-83 311.6 196 76.5
Cpa.g.sc120.7 Carica papaya HOM05D003740 ORTHO05D004611 2.5e-69 266.9 151 86.1
SGA_v2.0_scaffold69G23130 Striga asiatica HOM05D003740 ORTHO05D004611 1.3e-68 264.6 351 51.3
Actinidia17677 Actinidia chinensis HOM05D003740 ORTHO05D004611 1.1e-61 241.5 414 42.8
Aqoxy6G01654 Aquilegia oxysepala HOM05D003740 ORTHO05D004611 6.2e-60 235.7 211 61.1
Haze_26500 Corylus avellana HOM05D003740 ORTHO05D004611 1.3e-57 228.0 292 43.8
MCO05G206 Micromonas commoda HOM05D003740 ORTHO05D004611 2.9e-57 226.9 302 45.4
Cfa024885 Carpinus fangiana HOM05D003740 ORTHO05D004611 4.2e-48 196.4 303 39.3
HPP92_001282 Vanilla planifolia HOM05D003740 ORTHO05D004611 6.9e-43 179.1 214 48.6
AagrBONN_evm.TU.Sc2ySwM_117.4057 Anthoceros agrestis HOM05D003740 ORTHO05D004611 3.6e-39 166.8 183 53.6
Psat6g050760 Pisum sativum HOM05D003740 ORTHO05D018044 5.1e-38 162.9 120 69.2
vmacro09045 Vaccinium macrocarpon HOM05D003740 ORTHO05D004611 7.2e-32 142.5 75 90.7
Cpa.g.c37387 Carica papaya HOM05D003740 ORTHO05D004611 1.3e-28 131.7 135 57.0
TPR.G13517 Trifolium pratense HOM05D003740 ORTHO05D027079 8.0e-23 112.5 89 64.0
SMO112G0048 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 1.1e-19 102.1 82 61.0
Nitab4.5_0001618g0330 Nicotiana tabacum HOM05D003740 ORTHO05D004611 9.1e-19 99.0 54 81.5
Psat6g009800 Pisum sativum HOM05D003740 ORTHO05D004611 3.5e-18 97.1 61 73.8
MBI05_g15360_MAGBIO Magnolia biondii HOM05D003740 ORTHO05D004611 1.3e-17 95.1 50 90.0
BNapus_Darmor_BZH_scaffold_38p00040 Brassica napus HOM05D003740 ORTHO05D027079 3.2e-16 90.5 120 50.8
BcaC09g48688 Brassica carinata HOM05D003740 ORTHO05D027079 5.5e-16 89.7 85 56.5
BcaC02g11255 Brassica carinata HOM05D003740 ORTHO05D015230 1.8e-14 84.7 55 74.5
Pp3c1_19750 Physcomitrium patens HOM05D003740 ORTHO05D004611 7.5e-13 79.3 123 40.7
TPR.G40499 Trifolium pratense HOM05D003740 ORTHO05D004611 9.8e-13 79.0 60 65.0
TPR.G2297 Trifolium pratense HOM05D003740 ORTHO05D411092 1.6e-07 61.6 146 32.2
A03p42520 Brassica napus HOM05D024621 ORTHO05D015230 1.0e-06 58.9 55 58.2
BolC4t23402H Brassica oleracea HOM05D003740 ORTHO05D015230 4.0e-06 57.0 35 71.4
Ah.04g151350 Amaranthus hybridus HOM05D002173 ORTHO05D002189 5.2e-06 56.6 36 72.2


User provided reference genes

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