Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009877 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 2.6e-121 438.7 221 100.0
CSS0034871 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 8.2e-83 310.8 271 66.4
CSS0045377 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 1.5e-76 290.0 271 62.0
Rhsim09G0044900 Rhododendron simsii HOM05D004853 ORTHO05D005865 1.7e-75 286.6 272 61.0
Actinidia09471 Actinidia chinensis HOM05D004853 ORTHO05D005865 2.2e-75 286.2 270 62.6
Actinidia23713 Actinidia chinensis HOM05D004853 ORTHO05D005865 5.3e-74 281.6 270 61.9
Dinv12655 Davidia involucrata HOM05D004853 ORTHO05D005865 2.0e-73 279.6 271 62.4
Hma1.2p1_0226F.1_g095440 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 1.7e-72 276.6 270 61.1
Hma1.2p1_2668F.1_g326580 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 1.7e-72 276.6 270 61.1
TAR623G1093 Trochodendron aralioides HOM05D004853 ORTHO05D005865 1.9e-71 273.1 267 58.4
TWI36G0697 Tripterygium wilfordii HOM05D004853 ORTHO05D005865 2.5e-71 272.7 282 57.1
TAR376G0972 Trochodendron aralioides HOM05D004853 ORTHO05D005865 4.2e-71 271.9 268 58.6
Lj3C839T9 Lonicera japonica HOM05D004853 ORTHO05D005865 7.2e-71 271.2 270 58.5
MSTRG.18839 Avicennia marina HOM05D004853 ORTHO05D005865 2.7e-70 269.2 269 59.5
Cc01_g16780 Coffea canephora HOM05D004853 ORTHO05D005865 6.7e-69 264.6 273 57.5
Nn7g37081 Nelumbo nucifera HOM05D004853 ORTHO05D005865 3.3e-68 262.3 270 56.3
SGA_v2.0_scaffold18G08333 Striga asiatica HOM05D004853 ORTHO05D005865 1.3e-67 260.4 269 58.4
QL09p052469 Quercus lobata HOM05D004853 ORTHO05D005865 1.7e-67 260.0 270 58.1
QL09p051756 Quercus lobata HOM05D004853 ORTHO05D005865 2.2e-67 259.6 270 57.4
RcHm_v2.0_Chr6g0284201 Rosa chinensis HOM05D004853 ORTHO05D005865 2.2e-67 259.6 270 56.3
Sabra15G0112700 Salix brachista HOM05D004853 ORTHO05D005865 2.2e-67 259.6 214 65.9
Peaxi162Scf00238g00032 Petunia axillaris HOM05D004853 ORTHO05D005865 2.8e-67 259.2 268 57.5
Cfa004377 Carpinus fangiana HOM05D004853 ORTHO05D005865 8.2e-67 257.7 268 57.1
Haze_15035 Corylus avellana HOM05D004853 ORTHO05D005865 8.2e-67 257.7 268 57.1
MBI19_g34091_MAGBIO Magnolia biondii HOM05D004853 ORTHO05D005865 1.4e-66 256.9 212 67.5
Potri.015G090600 Populus trichocarpa HOM05D004853 ORTHO05D005865 2.4e-66 256.1 214 65.9
FAN27G1226 Fragaria x ananassa HOM05D004853 ORTHO05D005865 3.1e-66 255.8 275 54.5
Oeu037767.1 Olea europaea HOM05D004853 ORTHO05D005865 3.1e-66 255.8 269 56.5
FvH4_2g18640 Fragaria vesca HOM05D004853 ORTHO05D005865 5.3e-66 255.0 275 54.5
FAN15G3437 Fragaria x ananassa HOM05D004853 ORTHO05D005865 5.3e-66 255.0 275 54.5
FAN24G1506 Fragaria x ananassa HOM05D004853 ORTHO05D005865 5.3e-66 255.0 273 54.9
EL10Ac7g17891 Beta vulgaris HOM05D004853 ORTHO05D005865 7.0e-66 254.6 215 64.2
ClCG09G008800 Citrullus lanatus HOM05D004853 ORTHO05D005865 7.0e-66 254.6 270 55.9
Ciclev10019411m.g Citrus clementina HOM05D004853 ORTHO05D005865 7.0e-66 254.6 264 56.8
Eucgr.H00778 Eucalyptus grandis HOM05D004853 ORTHO05D005865 7.0e-66 254.6 215 67.0
C07p10970 Brassica napus HOM05D004853 ORTHO05D005865 1.6e-65 253.4 261 57.1
Prupe.8G199700 Prunus persica HOM05D004853 ORTHO05D005865 2.0e-65 253.1 273 54.9
Solyc09g059440.1 Solanum lycopersicum HOM05D004853 ORTHO05D005865 2.0e-65 253.1 270 55.9
MD10G1160500 Malus domestica HOM05D004853 ORTHO05D005865 2.6e-65 252.7 272 54.8
Nitab4.5_0007437g0010 Nicotiana tabacum HOM05D004853 ORTHO05D005865 5.9e-65 251.5 266 55.3
Sed0013559 Sechium edule HOM05D004853 ORTHO05D005865 5.9e-65 251.5 215 64.7
CiPaw.02G023000 Carya illinoinensis HOM05D004853 ORTHO05D005865 1.0e-64 250.8 211 64.9
CDE07G1728 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 1.0e-64 250.8 212 65.6
Nitab4.5_0000045g0440 Nicotiana tabacum HOM05D004853 ORTHO05D005865 1.3e-64 250.4 270 55.6
Sc17g0002190 Simmondsia chinensis HOM05D004853 ORTHO05D005865 1.3e-64 250.4 216 63.4
Sopen09g022590 Solanum pennellii HOM05D004853 ORTHO05D005865 1.3e-64 250.4 270 55.6
Atru.chr6.1420 Acer truncatum HOM05D004853 ORTHO05D005865 2.9e-64 249.2 215 65.1
DCAR_004725 Daucus carota HOM05D004853 ORTHO05D005865 2.9e-64 249.2 216 65.7
MD05G1172300 Malus domestica HOM05D004853 ORTHO05D005865 3.8e-64 248.8 272 54.4
Ah.15g093470 Amaranthus hybridus HOM05D004853 ORTHO05D005865 6.5e-64 248.1 211 62.1
CAN.G257.5 Capsicum annuum HOM05D004853 ORTHO05D005865 8.5e-64 247.7 214 65.4
PSO384G4190 Papaver somniferum HOM05D004853 ORTHO05D005865 8.5e-64 247.7 219 62.1
BcaC06g35779 Brassica carinata HOM05D004853 ORTHO05D005865 1.1e-63 247.3 260 56.2
BolC7t41562H Brassica oleracea HOM05D004853 ORTHO05D005865 1.1e-63 247.3 260 56.2
Aqoxy1G00113 Aquilegia oxysepala HOM05D004853 ORTHO05D005865 1.5e-63 246.9 213 63.8
MELO3C021058.2 Cucumis melo HOM05D004853 ORTHO05D005865 1.5e-63 246.9 214 63.6
SalBow6G4054 Salvia bowleyana HOM05D004853 ORTHO05D005865 1.5e-63 246.9 268 53.7
AUR62043704 Chenopodium quinoa HOM05D004853 ORTHO05D005865 3.2e-63 245.7 199 64.8
PGSC0003DMG400027946 Solanum tuberosum HOM05D004853 ORTHO05D005865 4.2e-63 245.4 270 54.8
BraA07t28514Z Brassica rapa HOM05D004853 ORTHO05D005865 5.5e-63 245.0 202 65.3
CANSAT01G2121 Cannabis sativa HOM05D004853 ORTHO05D005865 5.5e-63 245.0 217 63.6
AUR62038821 Chenopodium quinoa HOM05D004853 ORTHO05D005865 7.2e-63 244.6 199 64.3
CsaV3_7G026150 Cucumis sativus L. HOM05D004853 ORTHO05D005865 7.2e-63 244.6 214 64.0
CiPaw.01G049500 Carya illinoinensis HOM05D004853 ORTHO05D005865 1.2e-62 243.8 215 63.3
unitig_736.g22343 Utricularia gibba HOM05D004853 ORTHO05D005865 1.2e-62 243.8 216 63.0
A07p07260 Brassica napus HOM05D004853 ORTHO05D005865 2.1e-62 243.0 202 64.9
Manes.13G048900 Manihot esculenta HOM05D004853 ORTHO05D005865 2.1e-62 243.0 216 63.0
Lsat_1_v5_gn_8_89600 Lactuca sativa HOM05D004853 ORTHO05D005865 3.6e-62 242.3 213 64.3
Aa31LG8G11930 Aethionema arabicum HOM05D004853 ORTHO05D005865 1.4e-61 240.4 277 53.1
CAN.G128.1 Capsicum annuum HOM05D004853 ORTHO05D005865 1.8e-61 240.0 216 62.5
Thecc.01G221500 Theobroma cacao HOM05D004853 ORTHO05D005865 1.8e-61 240.0 273 53.8
BcaB06g26724 Brassica carinata HOM05D004853 ORTHO05D005865 4.0e-61 238.8 272 52.9
A03p44030 Brassica napus HOM05D004853 ORTHO05D005865 4.0e-61 238.8 269 53.2
BraA03t13534Z Brassica rapa HOM05D004853 ORTHO05D005865 4.0e-61 238.8 268 54.1
Gohir.D07G206000 Gossypium hirsutum HOM05D004853 ORTHO05D005865 5.2e-61 238.4 215 61.9
Gorai.001G232300 Gossypium raimondii HOM05D004853 ORTHO05D005865 5.2e-61 238.4 215 61.9
unitig_899.g15017 Utricularia gibba HOM05D004853 ORTHO05D005865 5.2e-61 238.4 213 61.5
DCAR_004733 Daucus carota HOM05D004853 ORTHO05D005865 8.8e-61 237.7 233 61.4
THA.LOC104808789 Tarenaya hassleriana HOM05D004853 ORTHO05D005865 8.8e-61 237.7 278 51.4
CARHR101430 Cardamine hirsuta HOM05D004853 ORTHO05D005865 1.1e-60 237.3 272 52.2
Sp3g22680 Schrenkiella parvula HOM05D004853 ORTHO05D005865 2.6e-60 236.1 272 52.9
BcaC01g03244 Brassica carinata HOM05D004853 ORTHO05D005865 5.7e-60 235.0 265 53.2
C03p54420 Brassica napus HOM05D004853 ORTHO05D005865 5.7e-60 235.0 265 53.2
BolC3t17728H Brassica oleracea HOM05D004853 ORTHO05D005865 5.7e-60 235.0 265 53.2
HanXRQChr10g0288791 Helianthus annuus HOM05D004853 ORTHO05D005865 5.7e-60 235.0 269 53.9
Aa31LG9G4920 Aethionema arabicum HOM05D004853 ORTHO05D005865 7.5e-60 234.6 274 50.4
Duzib133G1132 Durio zibethinus HOM05D004853 ORTHO05D005865 7.5e-60 234.6 271 53.5
HanXRQChr14g0439971 Helianthus annuus HOM05D004853 ORTHO05D005865 7.5e-60 234.6 265 54.3
Duzib138G1868 Durio zibethinus HOM05D004853 ORTHO05D005865 9.7e-60 234.2 219 61.6
Gohir.D07G205900 Gossypium hirsutum HOM05D004853 ORTHO05D005865 9.7e-60 234.2 215 60.9
Os11g0128400 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 2.2e-59 233.0 219 58.9
AL706U10010 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 2.8e-59 232.6 211 61.6
BcaB08g34434 Brassica carinata HOM05D004853 ORTHO05D005865 2.8e-59 232.6 270 53.0
COL.COLO4_15628 Corchorus olitorius HOM05D004853 ORTHO05D005865 3.7e-59 232.3 220 60.9
Gohir.A07G199600 Gossypium hirsutum HOM05D004853 ORTHO05D005865 3.7e-59 232.3 217 60.4
AL3G40790 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 4.8e-59 231.9 213 61.0
Gorai.007G156000 Gossypium raimondii HOM05D004853 ORTHO05D005865 8.2e-59 231.1 219 59.8
Os12g0124700 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 8.2e-59 231.1 223 58.3
AT3G25100 Arabidopsis thaliana HOM05D004853 ORTHO05D005865 1.4e-58 230.3 209 61.2
Zm00001eb405460 Zea mays HOM05D004853 ORTHO05D005865 3.1e-58 229.2 227 58.1
Cpa.g.sc43.113 Carica papaya HOM05D004853 ORTHO05D005865 4.1e-58 228.8 279 50.9
GSVIVG01000797001 Vitis vinifera HOM05D004853 ORTHO05D005865 4.1e-58 228.8 128 83.6
Carub.0003s2543 Capsella rubella HOM05D004853 ORTHO05D005865 1.6e-57 226.9 220 58.2
CDE04G0889 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 4.5e-57 225.3 143 77.6
Thhalv10002454m.g Eutrema salsugineum HOM05D004853 ORTHO05D005865 7.7e-57 224.6 212 59.9
Gohir.D11G145500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.0e-56 224.2 215 59.1
Phvul.008G130700 Phaseolus vulgaris HOM05D004853 ORTHO05D005865 2.2e-56 223.0 208 59.1
ECA236G0997 Erigeron canadensis HOM05D004853 ORTHO05D005865 2.5e-55 219.5 219 58.0
Medtr7g056153 Medicago truncatula HOM05D004853 ORTHO05D005865 2.7e-54 216.1 128 80.5
TPR.G6418 Trifolium pratense HOM05D004853 ORTHO05D005865 3.6e-54 215.7 128 80.5
Migut.D02501 Erythranthe guttata HOM05D004853 ORTHO05D005865 4.7e-54 215.3 128 79.7
SEGI_13565 Sequoiadendron giganteum HOM05D004853 ORTHO05D005865 8.0e-54 214.5 213 54.9
Lalb_Chr03g0041521 Lupinus albus HOM05D004853 ORTHO05D005865 1.4e-53 213.8 230 53.0
Psat3g148200 Pisum sativum HOM05D004853 ORTHO05D005865 3.0e-53 212.6 226 54.4
Ca_06554_v3 Cicer arietinum L. HOM05D004853 ORTHO05D005865 5.2e-53 211.8 232 53.4
Glyma.18G167000 Glycine max HOM05D004853 ORTHO05D005865 2.6e-52 209.5 212 55.2
Glyma.08G349400 Glycine max HOM05D004853 ORTHO05D005865 5.7e-52 208.4 216 54.2
ATR0068G062 Amborella trichopoda HOM05D004853 ORTHO05D005865 9.8e-52 207.6 197 58.4
VMungo1383G0658 Vigna mungo HOM05D004853 ORTHO05D005865 1.7e-51 206.8 211 56.4
Gorai.001G232100 Gossypium raimondii HOM05D004853 ORTHO05D005865 1.1e-50 204.1 252 52.0
Lj1g0018468 Lotus japonicus HOM05D004853 ORTHO05D005865 6.5e-48 194.9 216 52.3
SMO307G0064 Selaginella moellendorffii HOM05D004853 ORTHO05D005865 1.8e-45 186.8 224 46.4
Pp3c23_19980 Physcomitrium patens HOM05D004853 ORTHO05D005865 5.2e-45 185.3 209 48.3
CAN.G186.62 Capsicum annuum HOM05D004853 ORTHO05D005865 2.2e-43 179.9 108 80.6
CBR_g23403 Chara braunii HOM05D004853 ORTHO05D005865 2.2e-43 179.9 219 46.1
CBR_g40148 Chara braunii HOM05D004853 ORTHO05D005865 2.8e-43 179.5 225 45.8
Mapoly0045s0042 Marchantia polymorpha HOM05D004853 ORTHO05D005865 3.8e-40 169.1 213 47.4
Gohir.A11G139300 Gossypium hirsutum HOM05D004853 ORTHO05D005865 3.3e-39 166.0 221 49.3
Sabra02G0118100 Salix brachista HOM05D004853 ORTHO05D005865 2.1e-38 163.3 118 70.3
Gohir.A07G199500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 8.0e-38 161.4 215 50.2
AagrBONN_evm.TU.Sc2ySwM_117.731 Anthoceros agrestis HOM05D004853 ORTHO05D005865 3.7e-35 152.5 190 46.3
Zm00001eb163660 Zea mays HOM05D004853 ORTHO05D005865 1.6e-30 137.1 98 66.3
Dinv19180 Davidia involucrata HOM05D004853 ORTHO05D005865 4.0e-29 132.5 267 40.8
MCO03G169 Micromonas commoda HOM05D004853 ORTHO05D005865 5.6e-23 112.1 126 43.7
ECA233G3738 Erigeron canadensis HOM05D004853 ORTHO05D005865 1.2e-20 104.4 83 63.9
arahy.Tifrunner.gnm1.ann1.23GIHT Arachis hypogaea HOM05D004853 ORTHO05D005865 5.4e-18 95.5 220 34.1
PRCOL_00002078 Prasinoderma coloniale HOM05D004853 ORTHO05D005865 3.0e-16 89.7 133 32.3
HPP92_007506 Vanilla planifolia HOM05D004853 ORTHO05D005865 8.4e-11 71.6 109 44.0
AUR62016553 Chenopodium quinoa HOM05D004853 ORTHO05D005865 5.4e-10 68.9 42 71.4


User provided reference genes

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