Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009862 Camellia sinensis var. sinensis HOM05D028273 ORTHO05D005886 3.4e-98 362.1 246 100.0
CSS0044296 Camellia sinensis var. sinensis HOM05D028273 ORTHO05D014695 9.1e-83 310.8 245 83.3
CSS0042319 Camellia sinensis var. sinensis HOM05D028273 ORTHO05D005886 9.1e-75 284.3 248 79.8
CSS0017432 Camellia sinensis var. sinensis HOM05D028273 ORTHO05D005886 3.1e-54 216.1 242 66.9
FAN08G1587 Fragaria x ananassa HOM05D005012 ORTHO05D005886 5.1e-17 92.4 159 34.0
CSS0038015 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 1.4e-11 74.3 62 54.8
CSS0016088 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 4.2e-11 72.8 62 54.8
CSS0019574 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 1.2e-10 71.2 62 53.2
RcHm_v2.0_Chr1g0341871 Rosa chinensis HOM05D005012 ORTHO05D005886 1.6e-10 70.9 49 61.2
RcHm_v2.0_Chr7g0230481 Rosa chinensis HOM05D005012 ORTHO05D005886 1.6e-10 70.9 49 61.2
CSS0001231 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 2.1e-10 70.5 62 53.2
CSS0022677 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 2.1e-10 70.5 62 53.2
CSS0045334 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 2.1e-10 70.5 62 53.2
RcHm_v2.0_Chr6g0273901 Rosa chinensis HOM05D005012 ORTHO05D005886 2.1e-10 70.5 49 61.2
CSS0004182 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 2.7e-10 70.1 61 54.1
CSS0044969 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 2.7e-10 70.1 62 53.2
TWI79G1319 Tripterygium wilfordii HOM05D000107 ORTHO05D000062 3.5e-10 69.7 60 58.3
CSS0003542 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 4.6e-10 69.3 59 54.2
CSS0027060 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 4.6e-10 69.3 59 54.2
CSS0028601 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 4.6e-10 69.3 59 54.2
CSS0033025 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 4.6e-10 69.3 59 54.2
CSS0033950 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 4.6e-10 69.3 59 54.2
CSS0041327 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 4.6e-10 69.3 59 54.2
CSS0041437 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 4.6e-10 69.3 59 54.2
CSS0012868 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 6.0e-10 68.9 62 51.6
CSS0000891 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 1.0e-09 68.2 59 52.5
FvH4_3g22860 Fragaria vesca HOM05D005012 ORTHO05D005886 1.0e-09 68.2 138 29.7
FAN04G2636 Fragaria x ananassa HOM05D005012 ORTHO05D005886 1.3e-09 67.8 60 46.7
FAN25G0106 Fragaria x ananassa HOM05D005012 ORTHO05D005886 1.3e-09 67.8 60 46.7
CSS0010423 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 1.8e-09 67.4 62 51.6
FAN28G1702 Fragaria x ananassa HOM05D005012 ORTHO05D005886 3.0e-09 66.6 50 56.0
Rhsim05G0024300 Rhododendron simsii HOM05D005012 ORTHO05D005886 1.1e-08 64.7 56 41.1
Rhsim05G0034600 Rhododendron simsii HOM05D005012 ORTHO05D005886 1.1e-08 64.7 56 41.1
FvH4_4g09791 Fragaria vesca HOM05D000107 ORTHO05D000062 1.5e-08 64.3 60 46.7
CSS0007280 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 2.5e-08 63.5 57 45.6
FAN12G0378 Fragaria x ananassa HOM05D005012 ORTHO05D005886 2.5e-08 63.5 60 46.7
FAN16G2537 Fragaria x ananassa HOM05D005012 ORTHO05D005886 2.5e-08 63.5 49 53.1
Rhsim01G0079300 Rhododendron simsii HOM05D005012 ORTHO05D005886 3.3e-08 63.2 56 39.3
Rhsim01G0158900 Rhododendron simsii HOM05D000107 ORTHO05D000062 4.3e-08 62.8 58 39.7
FAN17G1574 Fragaria x ananassa HOM05D005012 ORTHO05D005886 5.6e-08 62.4 50 52.0
Rhsim01G0079900 Rhododendron simsii HOM05D005012 ORTHO05D005886 7.4e-08 62.0 56 39.3
RcHm_v2.0_Chr7g0222641 Rosa chinensis HOM05D005012 ORTHO05D005886 9.6e-08 61.6 125 29.6
Rhsim07G0167600 Rhododendron simsii HOM05D005012 ORTHO05D005886 1.3e-07 61.2 52 46.2
CSS0030618 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 1.6e-07 60.8 57 42.1
CSS0035704 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 1.6e-07 60.8 57 43.9
CSS0040728 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 1.6e-07 60.8 57 43.9
FAN15G1928 Fragaria x ananassa HOM05D005012 ORTHO05D005886 1.6e-07 60.8 71 42.3
FvH4_4g09832 Fragaria vesca HOM05D005012 ORTHO05D005886 2.1e-07 60.5 60 45.0
Rhsim09G0006300 Rhododendron simsii HOM05D005012 ORTHO05D005886 3.7e-07 59.7 62 45.2
FvH4_1g28181 Fragaria vesca HOM05D005012 ORTHO05D005886 6.2e-07 58.9 58 46.6
FAN04G2098 Fragaria x ananassa HOM05D005012 ORTHO05D005886 6.2e-07 58.9 72 38.9
FAN20G1519 Fragaria x ananassa HOM05D005012 ORTHO05D005886 1.8e-06 57.4 43 53.5
CSS0009064 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 2.4e-06 57.0 40 57.5
CSS0037011 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 3.1e-06 56.6 41 56.1
FAN10G0147 Fragaria x ananassa HOM05D000539 ORTHO05D000592 3.1e-06 56.6 62 43.5
FAN26G2139 Fragaria x ananassa HOM05D005012 ORTHO05D005886 3.1e-06 56.6 62 43.5
FvH4_5g37430 Fragaria vesca HOM05D000107 ORTHO05D000062 4.0e-06 56.2 60 43.3
Rhsim07G0133200 Rhododendron simsii HOM05D005012 ORTHO05D005886 6.9e-06 55.5 61 41.0


User provided reference genes

Program Settings