Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009831 Camellia sinensis var. sinensis HOM05D007068 ORTHO05D008590 1.9e-234 815.5 415 100.0
Actinidia39838 Actinidia chinensis HOM05D007068 ORTHO05D008590 7.1e-88 328.6 450 51.6
Dinv17551 Davidia involucrata HOM05D007068 ORTHO05D008590 1.5e-85 320.9 437 50.1
Rhsim08G0124500 Rhododendron simsii HOM05D007068 ORTHO05D008590 1.0e-81 308.1 435 45.5
Hma1.2p1_0669F.1_g200120 Hydrangea macrophylla HOM05D007068 ORTHO05D008590 1.0e-73 281.6 477 44.0
TAR622G0435 Trochodendron aralioides HOM05D007068 ORTHO05D008590 3.6e-71 273.1 480 43.3
Cfa019656 Carpinus fangiana HOM05D007068 ORTHO05D008590 6.3e-68 262.3 436 44.3
CiPaw.16G093400 Carya illinoinensis HOM05D007068 ORTHO05D008590 1.5e-66 257.7 456 42.1
Thecc.03G056900 Theobroma cacao HOM05D007068 ORTHO05D008590 2.0e-66 257.3 453 43.9
SalBow1G5613 Salvia bowleyana HOM05D007068 ORTHO05D008590 1.3e-65 254.6 431 42.0
COL.COLO4_04377 Corchorus olitorius HOM05D007068 ORTHO05D008590 2.1e-63 247.3 455 44.4
Atru.chr9.1734 Acer truncatum HOM05D007068 ORTHO05D008590 2.3e-62 243.8 451 41.9
Oeu031766.1 Olea europaea HOM05D007068 ORTHO05D008590 1.5e-61 241.1 465 39.6
Duzib084G0836 Durio zibethinus HOM05D007068 ORTHO05D008590 2.6e-61 240.4 457 39.8
Cc04_g06260 Coffea canephora HOM05D007068 ORTHO05D008590 2.8e-60 236.9 466 40.3
Eucgr.K02273 Eucalyptus grandis HOM05D007068 ORTHO05D008590 1.4e-59 234.6 461 39.0
Haze_18849 Corylus avellana HOM05D007068 ORTHO05D008590 4.1e-59 233.0 470 40.2
GSVIVG01011540001 Vitis vinifera HOM05D007068 ORTHO05D008590 1.5e-58 231.1 420 40.5
CANSAT80G0386 Cannabis sativa HOM05D007068 ORTHO05D008590 5.9e-58 229.2 434 38.7
Nn3g18277 Nelumbo nucifera HOM05D007068 ORTHO05D008590 2.2e-57 227.3 486 37.7
Aqoxy3G00060 Aquilegia oxysepala HOM05D007068 ORTHO05D008590 2.9e-57 226.9 456 39.7
CsaV3_1G004370 Cucumis sativus L. HOM05D007068 ORTHO05D008590 8.5e-57 225.3 465 38.1
Solyc03g118700.3 Solanum lycopersicum HOM05D007068 ORTHO05D008590 1.4e-56 224.6 453 40.0
SGA_v2.0_scaffold36G14383 Striga asiatica HOM05D007068 ORTHO05D008590 2.5e-56 223.8 438 38.4
CAN.G843.56 Capsicum annuum HOM05D007068 ORTHO05D008590 4.2e-56 223.0 447 39.8
Hma1.2p1_0669F.1_g200130 Hydrangea macrophylla HOM05D007068 ORTHO05D008590 2.1e-55 220.7 441 40.8
Migut.D01541 Erythranthe guttata HOM05D007068 ORTHO05D008590 2.7e-55 220.3 478 35.4
PGSC0003DMG400005672 Solanum tuberosum HOM05D007068 ORTHO05D008590 3.6e-55 219.9 455 39.1
Nitab4.5_0003401g0040 Nicotiana tabacum HOM05D007068 ORTHO05D008590 2.3e-54 217.2 433 40.0
QL10p029594 Quercus lobata HOM05D007068 ORTHO05D008590 5.2e-54 216.1 395 40.5
MELO3C017359.2 Cucumis melo HOM05D007068 ORTHO05D008590 6.7e-54 215.7 470 37.4
RcHm_v2.0_Chr7g0178441 Rosa chinensis HOM05D007068 ORTHO05D008590 6.7e-54 215.7 439 39.2
A06p04350 Brassica napus HOM05D007068 ORTHO05D008590 1.7e-52 211.1 447 37.8
FvH4_5g17330 Fragaria vesca HOM05D007068 ORTHO05D008590 1.7e-52 211.1 438 38.1
FAN18G2889 Fragaria x ananassa HOM05D007068 ORTHO05D008590 1.7e-52 211.1 438 38.1
Sed0003101 Sechium edule HOM05D007068 ORTHO05D008590 1.7e-52 211.1 470 37.0
Gohir.A07G061700 Gossypium hirsutum HOM05D007068 ORTHO05D008590 2.8e-52 210.3 458 38.0
Gohir.D07G066400 Gossypium hirsutum HOM05D007068 ORTHO05D008590 2.8e-52 210.3 465 39.1
Potri.012G047000 Populus trichocarpa HOM05D007068 ORTHO05D008590 3.7e-52 209.9 461 38.2
Gorai.001G070000 Gossypium raimondii HOM05D007068 ORTHO05D008590 1.1e-51 208.4 467 38.8
BcaB07g33743 Brassica carinata HOM05D007068 ORTHO05D008590 4.1e-51 206.5 459 35.5
Nitab4.5_0004556g0050 Nicotiana tabacum HOM05D007068 ORTHO05D008590 5.3e-51 206.1 451 39.7
Carub.0001s3769 Capsella rubella HOM05D007068 ORTHO05D008590 7.0e-51 205.7 447 36.5
Prupe.5G233500 Prunus persica HOM05D007068 ORTHO05D008590 7.0e-51 205.7 484 35.7
PSO478G2297 Papaver somniferum HOM05D007068 ORTHO05D008590 2.0e-50 204.1 458 36.0
CARHR038180 Cardamine hirsuta HOM05D007068 ORTHO05D008590 2.6e-50 203.8 457 37.2
FAN13G0457 Fragaria x ananassa HOM05D007068 ORTHO05D008590 2.6e-50 203.8 440 38.4
Peaxi162Scf00683g00453 Petunia axillaris HOM05D007068 ORTHO05D008590 2.2e-49 200.7 449 36.7
PSO017G3869 Papaver somniferum HOM05D007068 ORTHO05D008590 8.5e-49 198.7 460 35.9
Sp1g35530 Schrenkiella parvula HOM05D007068 ORTHO05D008590 1.1e-48 198.4 453 36.0
Ca_17189_v3 Cicer arietinum L. HOM05D007068 ORTHO05D008590 1.5e-48 198.0 448 36.2
AL1G55220 Arabidopsis lyrata HOM05D007068 ORTHO05D008590 4.2e-48 196.4 450 36.2
ECA238G2622 Erigeron canadensis HOM05D007068 ORTHO05D008590 4.2e-48 196.4 409 36.7
C06p03180 Brassica napus HOM05D007068 ORTHO05D008590 7.2e-48 195.7 459 36.2
Lsat_1_v5_gn_2_14700 Lactuca sativa HOM05D007068 ORTHO05D008590 3.6e-47 193.4 266 46.6
BraA06t23639Z Brassica rapa HOM05D007068 ORTHO05D008590 1.0e-46 191.8 476 35.3
FAN04G2769 Fragaria x ananassa HOM05D007068 ORTHO05D008590 1.0e-46 191.8 438 36.8
Lj4g0019727 Lotus japonicus HOM05D007068 ORTHO05D008590 1.0e-46 191.8 447 35.6
BcaC08g43059 Brassica carinata HOM05D007068 ORTHO05D008590 4.0e-46 189.9 479 35.1
BolC6t35436H Brassica oleracea HOM05D007068 ORTHO05D008590 4.0e-46 189.9 479 35.1
Thhalv10011472m.g Eutrema salsugineum HOM05D007068 ORTHO05D008590 3.3e-45 186.8 461 32.5
Lalb_Chr16g0386991 Lupinus albus HOM05D007068 ORTHO05D008590 5.7e-45 186.0 455 34.7
arahy.Tifrunner.gnm1.ann1.N01HH5 Arachis hypogaea HOM05D007068 ORTHO05D008590 7.5e-45 185.7 327 42.2
Manes.14G171300 Manihot esculenta HOM05D007068 ORTHO05D008590 7.5e-45 185.7 456 35.5
Sabra12G0033000 Salix brachista HOM05D007068 ORTHO05D008590 1.7e-44 184.5 276 46.4
Peaxi162Scf00683g00454 Petunia axillaris HOM05D007068 ORTHO05D008590 2.2e-44 184.1 430 37.0
Medtr8g107330 Medicago truncatula HOM05D007068 ORTHO05D008590 2.8e-44 183.7 446 35.0
Glyma.08G054400 Glycine max HOM05D007068 ORTHO05D008590 4.8e-44 183.0 366 38.0
VMungo0251G0101 Vigna mungo HOM05D007068 ORTHO05D008590 6.3e-44 182.6 362 38.7
AT1G48580 Arabidopsis thaliana HOM05D007068 ORTHO05D008590 1.1e-43 181.8 464 34.5
ClCG06G014310 Citrullus lanatus HOM05D007068 ORTHO05D008590 1.1e-43 181.8 455 37.1
Aa31LG10G5220 Aethionema arabicum HOM05D007068 ORTHO05D008590 5.3e-43 179.5 459 33.6
Psat7g003560 Pisum sativum HOM05D007068 ORTHO05D008590 5.3e-43 179.5 440 35.5
DCAR_014504 Daucus carota HOM05D007068 ORTHO05D008590 1.2e-42 178.3 444 35.6
MD06G1227000 Malus domestica HOM05D007068 ORTHO05D008590 1.6e-42 177.9 299 41.8
arahy.Tifrunner.gnm1.ann1.ZH8P6D Arachis hypogaea HOM05D007068 ORTHO05D008590 3.5e-42 176.8 258 46.5
Phvul.002G330100 Phaseolus vulgaris HOM05D007068 ORTHO05D008590 9.4e-40 168.7 466 33.7
Cpa.g.sc3.397 Carica papaya HOM05D007068 ORTHO05D008590 1.6e-39 167.9 439 33.7
MBI13_g47078_MAGBIO Magnolia biondii HOM05D007068 ORTHO05D008590 2.7e-39 167.2 263 44.5
EL10Ac4g08480 Beta vulgaris HOM05D007068 ORTHO05D008590 4.0e-38 163.3 230 46.1
TPR.G1401 Trifolium pratense HOM05D007068 ORTHO05D008590 4.0e-38 163.3 377 35.3
AUR62037972 Chenopodium quinoa HOM05D007068 ORTHO05D008590 3.7e-36 156.8 139 56.8
HPP92_002012 Vanilla planifolia HOM05D007068 ORTHO05D008590 1.8e-35 154.5 271 41.0
ATR0618G302 Amborella trichopoda HOM05D007068 ORTHO05D008590 1.2e-34 151.8 335 36.1
Sc10g0009180 Simmondsia chinensis HOM05D007068 ORTHO05D008590 1.6e-31 141.4 270 41.1
Hund10357 Selenicereus undatus HOM05D007068 ORTHO05D008590 1.2e-29 135.2 236 43.2
Ah.06g187490 Amaranthus hybridus HOM05D007068 ORTHO05D008590 1.5e-29 134.8 237 40.1
Sopen03g037660 Solanum pennellii HOM05D007068 ORTHO05D008590 2.6e-29 134.0 200 48.0
CDE02G3810 Ceratophyllum demersum HOM05D007068 ORTHO05D008590 4.1e-27 126.7 244 39.8
Ciclev10008793m.g Citrus clementina HOM05D007068 ORTHO05D008590 7.8e-26 122.5 91 63.7
VMungo0251G0567 Vigna mungo HOM05D007068 ORTHO05D008590 5.0e-25 119.8 195 35.9
Zm00001eb304630 Zea mays HOM05D007068 ORTHO05D008590 4.3e-24 116.7 418 29.7
Mapoly0060s0110 Marchantia polymorpha HOM05D007068 ORTHO05D008590 1.6e-23 114.8 230 33.9
SMO164G0186 Selaginella moellendorffii HOM05D007068 ORTHO05D008590 1.2e-21 108.6 170 38.8
SEGI_36605 Sequoiadendron giganteum HOM05D007068 ORTHO05D008590 6.4e-20 102.8 107 47.7
unitig_8.g4506 Utricularia gibba HOM05D007068 ORTHO05D008590 4.1e-19 100.1 444 26.4
SMO164G0105 Selaginella moellendorffii HOM05D020476 ORTHO05D008590 9.2e-19 99.0 171 36.3
HanXRQChr14g0431751 Helianthus annuus HOM05D007068 ORTHO05D008590 1.6e-18 98.2 78 60.3
vmacro17572 Vaccinium macrocarpon HOM05D007068 ORTHO05D008590 3.5e-18 97.1 83 59.0
FAN08G2700 Fragaria x ananassa HOM05D007068 ORTHO05D008590 1.0e-17 95.5 88 56.8
AagrBONN_evm.TU.Sc2ySwM_362.2609 Anthoceros agrestis HOM05D007068 ORTHO05D008590 6.6e-17 92.8 151 35.1
Pp3c3_22100 Physcomitrium patens HOM05D007068 ORTHO05D008590 2.5e-16 90.9 186 36.0
Pp3c3_22103 Physcomitrium patens HOM05D007068 ORTHO05D008590 2.5e-16 90.9 186 36.0
VMungo1215G1321 Vigna mungo HOM05D007068 ORTHO05D008590 1.6e-10 71.6 84 38.1
arahy.Tifrunner.gnm1.ann1.USF1F6 Arachis hypogaea HOM05D007068 ORTHO05D008590 1.3e-09 68.6 56 53.6
Ah.03g142260 Amaranthus hybridus HOM05D007068 ORTHO05D008590 2.1e-07 61.2 78 42.3
Cre03.g201700 Chlamydomonas reinhardtii HOM05D007068 ORTHO05D008590 1.8e-06 58.2 133 30.8
VMungo0251G2390 Vigna mungo HOM05D007068 ORTHO05D008590 3.1e-06 57.4 79 34.2
CBR_g21755 Chara braunii HOM05D007068 ORTHO05D008590 6.8e-06 56.2 79 35.4


User provided reference genes

Program Settings