Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009830 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 4.4e-63 244.6 136 100.0
CSS0021530 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 3.8e-62 241.5 136 98.5
Dinv24281 Davidia involucrata HOM05D005880 ORTHO05D007114 1.1e-40 170.2 148 66.9
arahy.Tifrunner.gnm1.ann1.G2QNI1 Arachis hypogaea HOM05D005880 ORTHO05D007114 4.5e-39 164.9 150 67.3
Glyma.15G046700 Glycine max HOM05D005880 ORTHO05D007114 9.9e-39 163.7 150 66.7
Duzib052G0157 Durio zibethinus HOM05D005880 ORTHO05D007114 1.7e-38 162.9 150 66.0
Hma1.2p1_0217F.1_g092030 Hydrangea macrophylla HOM05D005880 ORTHO05D007114 1.7e-38 162.9 150 66.0
Duzib132G0062 Durio zibethinus HOM05D005880 ORTHO05D007114 6.4e-38 161.0 150 66.0
Rhsim11G0129500 Rhododendron simsii HOM05D005880 ORTHO05D007114 6.4e-38 161.0 150 60.0
Thecc.02G038300 Theobroma cacao HOM05D005880 ORTHO05D007114 1.9e-37 159.5 150 64.7
VMungo0540G2478 Vigna mungo HOM05D005880 ORTHO05D007114 5.5e-37 157.9 150 63.3
COL.COLO4_17867 Corchorus olitorius HOM05D005880 ORTHO05D007114 7.1e-37 157.5 150 64.7
Phvul.006G214500 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 7.1e-37 157.5 150 63.3
RcHm_v2.0_Chr7g0222451 Rosa chinensis HOM05D005880 ORTHO05D007114 1.6e-36 156.4 150 61.3
Lj6g0008702 Lotus japonicus HOM05D005880 ORTHO05D007114 2.1e-36 156.0 150 62.0
Medtr2g007190 Medicago truncatula HOM05D005880 ORTHO05D007114 4.6e-36 154.8 150 62.7
Gohir.A01G000600 Gossypium hirsutum HOM05D005880 ORTHO05D007114 6.0e-36 154.5 150 64.0
Gohir.D01G000400 Gossypium hirsutum HOM05D005880 ORTHO05D007114 6.0e-36 154.5 150 64.0
Gorai.002G001000 Gossypium raimondii HOM05D005880 ORTHO05D007114 6.0e-36 154.5 150 64.0
FvH4_5g29530 Fragaria vesca HOM05D005880 ORTHO05D007114 2.3e-35 152.5 150 60.7
TAR628G0071 Trochodendron aralioides HOM05D005880 ORTHO05D007114 3.9e-35 151.8 150 62.0
Aqoxy6G00184 Aquilegia oxysepala HOM05D005880 ORTHO05D007114 8.7e-35 150.6 152 61.2
Haze_01670 Corylus avellana HOM05D005880 ORTHO05D007114 8.7e-35 150.6 150 60.0
GSVIVG01022927001 Vitis vinifera HOM05D005880 ORTHO05D007114 8.7e-35 150.6 150 61.3
MD15G1423100 Malus domestica HOM05D005880 ORTHO05D007114 1.5e-34 149.8 150 58.0
Potri.006G003600 Populus trichocarpa HOM05D005880 ORTHO05D007114 1.9e-34 149.4 150 60.7
CiPaw.06G147400 Carya illinoinensis HOM05D005880 ORTHO05D007114 2.5e-34 149.1 141 61.0
QL11p018494 Quercus lobata HOM05D005880 ORTHO05D007114 5.6e-34 147.9 149 59.7
Atru.chr6.645 Acer truncatum HOM05D005880 ORTHO05D007114 7.4e-34 147.5 150 59.3
FAN04G0122 Fragaria x ananassa HOM05D005880 ORTHO05D007114 9.6e-34 147.1 142 59.9
Ca_00076_v3 Cicer arietinum L. HOM05D005880 ORTHO05D007114 1.3e-33 146.7 141 62.4
FAN18G2654 Fragaria x ananassa HOM05D005880 ORTHO05D007114 1.3e-33 146.7 142 59.9
Sabra16G0009100 Salix brachista HOM05D005880 ORTHO05D007114 1.6e-33 146.4 150 60.0
Cc02_g22480 Coffea canephora HOM05D005880 ORTHO05D007114 2.8e-33 145.6 150 60.0
Manes.10G129200 Manihot esculenta HOM05D005880 ORTHO05D007114 2.8e-33 145.6 150 58.0
Manes.07G015600 Manihot esculenta HOM05D005880 ORTHO05D007114 4.8e-33 144.8 150 58.7
Cpa.g.sc113.61 Carica papaya HOM05D005880 ORTHO05D007114 6.2e-33 144.4 150 59.3
Prupe.1G568400 Prunus persica HOM05D005880 ORTHO05D007114 8.2e-33 144.1 142 59.2
TAR376G0254 Trochodendron aralioides HOM05D005880 ORTHO05D007114 1.1e-32 143.7 150 57.3
CSS0016002 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 1.4e-32 143.3 141 63.8
CsaV3_3G018850 Cucumis sativus L. HOM05D005880 ORTHO05D007114 2.4e-32 142.5 150 56.0
CSS0048748 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 4.0e-32 141.7 124 66.1
FAN08G1303 Fragaria x ananassa HOM05D005880 ORTHO05D007114 4.0e-32 141.7 140 58.6
MD08G1229100 Malus domestica HOM05D005880 ORTHO05D007114 4.0e-32 141.7 150 55.3
CiPaw.05G044300 Carya illinoinensis HOM05D005880 ORTHO05D007114 6.9e-32 141.0 150 58.0
Potri.016G004300 Populus trichocarpa HOM05D005880 ORTHO05D007114 9.0e-32 140.6 150 58.0
TPR.G23065 Trifolium pratense HOM05D005880 ORTHO05D007114 2.0e-31 139.4 150 58.7
Ciclev10002788m.g Citrus clementina HOM05D005880 ORTHO05D007114 2.6e-31 139.0 150 57.3
Lsat_1_v5_gn_5_109301 Lactuca sativa HOM05D005880 ORTHO05D007114 4.5e-31 138.3 137 61.3
ClCG05G009710 Citrullus lanatus HOM05D005880 ORTHO05D007114 5.8e-31 137.9 150 55.3
PGSC0003DMG400023792 Solanum tuberosum HOM05D005880 ORTHO05D007114 7.6e-31 137.5 151 56.3
ECA234G2605 Erigeron canadensis HOM05D005880 ORTHO05D007114 3.8e-30 135.2 150 56.0
Sopen01g046630 Solanum pennellii HOM05D005880 ORTHO05D007114 3.8e-30 135.2 151 55.6
Solyc01g104190.2 Solanum lycopersicum HOM05D005880 ORTHO05D007114 8.4e-30 134.0 151 55.0
Sabra16G0009300 Salix brachista HOM05D005880 ORTHO05D007114 1.1e-29 133.7 141 57.4
Migut.B00838 Erythranthe guttata HOM05D005880 ORTHO05D007114 1.4e-29 133.3 150 54.7
Nitab4.5_0010062g0030 Nicotiana tabacum HOM05D005880 ORTHO05D007114 1.4e-29 133.3 152 55.9
HanXRQChr10g0290391 Helianthus annuus HOM05D005880 ORTHO05D007114 1.9e-29 132.9 150 56.0
HanXRQChr10g0301391 Helianthus annuus HOM05D005880 ORTHO05D007114 1.9e-29 132.9 150 56.0
Sed0000042 Sechium edule HOM05D005880 ORTHO05D007114 2.5e-29 132.5 150 52.7
Nn5g28217 Nelumbo nucifera HOM05D005880 ORTHO05D007114 5.5e-29 131.3 146 52.7
Peaxi162Scf00011g00326 Petunia axillaris HOM05D005880 ORTHO05D007114 5.5e-29 131.3 155 54.2
TWI59G1122 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 7.1e-29 131.0 151 55.0
CANSAT54G2878 Cannabis sativa HOM05D005880 ORTHO05D007114 1.2e-28 130.2 150 54.0
Eucgr.G00579 Eucalyptus grandis HOM05D005880 ORTHO05D007114 3.5e-28 128.6 150 52.0
Ah.04g161590 Amaranthus hybridus HOM05D005880 ORTHO05D007114 1.0e-27 127.1 150 52.0
arahy.Tifrunner.gnm1.ann1.59Y12W Arachis hypogaea HOM05D000161 ORTHO05D007114 3.0e-27 125.6 121 64.5
arahy.Tifrunner.gnm1.ann1.IQ7NU0 Arachis hypogaea HOM05D005880 ORTHO05D007114 3.0e-27 125.6 121 64.5
arahy.Tifrunner.gnm1.ann1.REH2VN Arachis hypogaea HOM05D005880 ORTHO05D007114 3.0e-27 125.6 121 64.5
DCAR_029253 Daucus carota HOM05D005880 ORTHO05D007114 3.0e-27 125.6 150 53.3
Sc16g0012020 Simmondsia chinensis HOM05D005880 ORTHO05D007114 3.0e-27 125.6 150 52.0
arahy.Tifrunner.gnm1.ann1.JTZ9FV Arachis hypogaea HOM05D005880 ORTHO05D007114 3.9e-27 125.2 120 64.2
PGR042G3410 Punica granatum HOM05D005880 ORTHO05D007114 5.1e-27 124.8 150 55.3
EL10Ac4g10345 Beta vulgaris HOM05D005880 ORTHO05D007114 1.5e-26 123.2 150 51.3
arahy.Tifrunner.gnm1.ann1.MS6DZN Arachis hypogaea HOM05D005880 ORTHO05D007114 3.3e-26 122.1 119 63.0
SGA_v2.0_scaffold1G00307 Striga asiatica HOM05D002729 ORTHO05D003163 3.3e-26 122.1 145 50.3
AL2G15640 Arabidopsis lyrata HOM05D005880 ORTHO05D007114 4.3e-26 121.7 150 50.7
Nitab4.5_0002245g0020 Nicotiana tabacum HOM05D005880 ORTHO05D007114 9.7e-26 120.6 152 53.9
Oeu045943.1 Olea europaea HOM05D005880 ORTHO05D007114 9.7e-26 120.6 132 56.8
THA.LOC104819299 Tarenaya hassleriana HOM05D005880 ORTHO05D007114 9.7e-26 120.6 151 50.3
Lalb_Chr15g0090661 Lupinus albus HOM05D005880 ORTHO05D007114 1.6e-25 119.8 121 60.3
Aa31LG2G9680 Aethionema arabicum HOM05D005880 ORTHO05D007114 2.2e-25 119.4 150 50.0
Nn1g08723 Nelumbo nucifera HOM05D005880 ORTHO05D007114 2.2e-25 119.4 138 51.4
arahy.Tifrunner.gnm1.ann1.BDEX7B Arachis hypogaea HOM05D005880 ORTHO05D007114 2.8e-25 119.0 112 64.3
Gohir.D02G233200 Gossypium hirsutum HOM05D005880 ORTHO05D007114 8.2e-25 117.5 151 53.6
Gorai.005G261100 Gossypium raimondii HOM05D005880 ORTHO05D007114 8.2e-25 117.5 151 53.6
CAN.G1577.17 Capsicum annuum HOM05D005880 ORTHO05D007114 1.1e-24 117.1 146 51.4
Carub.0002s0442 Capsella rubella HOM05D005880 ORTHO05D007114 1.4e-24 116.7 150 51.3
Thhalv10023746m.g Eutrema salsugineum HOM05D005880 ORTHO05D007114 1.4e-24 116.7 150 49.3
Gohir.A03G211800 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.4e-24 116.7 151 53.0
Sp2g03790 Schrenkiella parvula HOM05D005880 ORTHO05D007114 1.4e-24 116.7 150 50.7
AT1G60870 Arabidopsis thaliana HOM05D005880 ORTHO05D007114 1.8e-24 116.3 150 50.0
arahy.Tifrunner.gnm1.ann1.90JL3B Arachis hypogaea HOM05D005880 ORTHO05D007114 1.8e-24 116.3 116 61.2
AUR62000032 Chenopodium quinoa HOM05D005880 ORTHO05D007114 3.1e-24 115.5 150 48.7
BcaB07g31236 Brassica carinata HOM05D005880 ORTHO05D007114 4.1e-24 115.2 150 49.3
BcaC04g22278 Brassica carinata HOM05D005880 ORTHO05D007114 5.3e-24 114.8 150 48.7
A09p17170 Brassica napus HOM05D005880 ORTHO05D007114 5.3e-24 114.8 150 48.7
C09p21370 Brassica napus HOM05D005880 ORTHO05D007114 5.3e-24 114.8 150 48.7
BolC9t55037H Brassica oleracea HOM05D005880 ORTHO05D007114 5.3e-24 114.8 150 48.7
BraA09t37350Z Brassica rapa HOM05D005880 ORTHO05D007114 5.3e-24 114.8 150 48.7
CARHR051910 Cardamine hirsuta HOM05D005880 ORTHO05D007114 1.5e-23 113.2 150 50.0
Psat1g224760 Pisum sativum HOM05D005880 ORTHO05D007114 1.5e-23 113.2 119 58.8
MBI06_g20717_MAGBIO Magnolia biondii HOM05D005880 ORTHO05D007114 5.9e-23 111.3 145 46.9
Gohir.A08G134100 Gossypium hirsutum HOM05D005880 ORTHO05D007114 7.6e-23 110.9 146 51.4
CiPaw.04G102300 Carya illinoinensis HOM05D005880 ORTHO05D007114 2.5e-21 105.9 114 54.4
PSO528G0075 Papaver somniferum HOM05D005880 ORTHO05D007114 2.5e-21 105.9 151 47.7
Actinidia26146 Actinidia chinensis HOM05D005880 ORTHO05D007114 7.2e-21 104.4 119 54.6
Sed0012668 Sechium edule HOM05D005880 ORTHO05D007114 1.6e-20 103.2 147 49.7
TWI23G0568 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 2.1e-20 102.8 150 50.7
FAN13G3279 Fragaria x ananassa HOM05D005880 ORTHO05D007114 2.7e-20 102.4 118 52.5
Phvul.002G250100 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 5.7e-18 94.7 151 47.0
Ah.06g193070 Amaranthus hybridus HOM05D005880 ORTHO05D007114 2.8e-17 92.4 125 45.6
Gohir.A02G126300 Gossypium hirsutum HOM05D005880 ORTHO05D007114 4.5e-15 85.1 72 66.7
CANSAT35G1534 Cannabis sativa HOM05D005880 ORTHO05D007114 7.7e-15 84.3 112 46.4
VMungo0251G0848 Vigna mungo HOM05D005880 ORTHO05D007114 3.8e-14 82.0 152 42.1
AUR62019202 Chenopodium quinoa HOM05D005880 ORTHO05D007114 1.1e-13 80.5 121 45.5
CANSAT21G1779 Cannabis sativa HOM05D005880 ORTHO05D007114 3.2e-13 79.0 111 45.0
CDE08G1156 Ceratophyllum demersum HOM05D005880 ORTHO05D007114 7.2e-13 77.8 150 36.7
Dinv19366 Davidia involucrata HOM05D005880 ORTHO05D007114 6.1e-12 74.7 65 67.7
MELO3C019478.2 Cucumis melo HOM05D005880 ORTHO05D007114 2.0e-10 69.7 70 55.7
SalBow5G4729 Salvia bowleyana HOM05D005880 ORTHO05D007114 9.7e-10 67.4 71 50.7
CAN.G1577.19 Capsicum annuum HOM05D005880 ORTHO05D007114 1.3e-09 67.0 71 54.9
Oeu025682.1 Olea europaea HOM05D005880 ORTHO05D007114 6.3e-09 64.7 92 46.7
Lsat_1_v5_gn_5_89321 Lactuca sativa HOM05D005880 ORTHO05D007114 3.1e-08 62.4 89 48.3
arahy.Tifrunner.gnm1.ann1.3M3641 Arachis hypogaea HOM05D005880 ORTHO05D007114 3.4e-07 58.9 86 43.0
arahy.Tifrunner.gnm1.ann1.05MEX4 Arachis hypogaea HOM05D005880 ORTHO05D007114 7.7e-07 57.8 107 41.1
HPP92_024638 Vanilla planifolia HOM05D005880 ORTHO05D007114 2.2e-06 56.2 122 34.4
arahy.Tifrunner.gnm1.ann1.L44J93 Arachis hypogaea HOM05D000101 ORTHO05D003282 5.0e-06 55.1 55 58.2


User provided reference genes

Program Settings