Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009827 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 7.2e-59 230.3 113 100.0
CSS0002973 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.0e-52 209.9 112 91.1
CSS0048671 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 8.5e-52 206.8 112 90.2
CSS0034852 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 8.2e-47 190.3 112 85.7
CSS0010493 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 4.2e-43 177.9 87 98.9
CSS0005828 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 6.1e-42 174.1 87 96.6
CSS0011657 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 6.1e-42 174.1 113 80.5
CSS0033275 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 5.2e-41 171.0 87 93.1
Actinidia04875 Actinidia chinensis HOM05D004701 ORTHO05D005220 8.5e-36 153.7 86 83.7
vmacro17562 Vaccinium macrocarpon HOM05D004701 ORTHO05D005220 5.5e-35 151.0 86 83.7
Rhsim08G0152800 Rhododendron simsii HOM05D004701 ORTHO05D005220 2.8e-34 148.7 86 81.4
Dinv38737 Davidia involucrata HOM05D004701 ORTHO05D005220 2.0e-32 142.5 85 77.6
Hma1.2p1_0060F.1_g033570 Hydrangea macrophylla HOM05D004701 ORTHO05D005220 8.6e-28 127.1 85 70.6
Lj5A108T60 Lonicera japonica HOM05D004701 ORTHO05D005220 2.5e-27 125.6 89 67.4
Haze_07305 Corylus avellana HOM05D004701 ORTHO05D005220 1.8e-25 119.4 88 65.9
GSVIVG01007980001 Vitis vinifera HOM05D004701 ORTHO05D005220 3.0e-25 118.6 85 64.7
Potri.017G112200 Populus trichocarpa HOM05D004701 ORTHO05D005220 6.8e-25 117.5 87 63.2
TAR629G0729 Trochodendron aralioides HOM05D004701 ORTHO05D005220 1.2e-24 116.7 83 65.1
TAR629G3124 Trochodendron aralioides HOM05D004701 ORTHO05D005220 1.2e-24 116.7 83 65.1
Cfa018922 Carpinus fangiana HOM05D004701 ORTHO05D005220 1.5e-24 116.3 86 66.3
Eucgr.B00530 Eucalyptus grandis HOM05D004701 ORTHO05D005220 4.4e-24 114.8 77 70.1
Sabra17G0093000 Salix brachista HOM05D004701 ORTHO05D005220 4.4e-24 114.8 86 66.3
CiPaw.12G011900 Carya illinoinensis HOM05D004701 ORTHO05D005220 6.4e-23 110.9 84 64.3
Nn4g23237 Nelumbo nucifera HOM05D004701 ORTHO05D005220 6.4e-23 110.9 91 60.4
COL.COLO4_36922 Corchorus olitorius HOM05D004701 ORTHO05D005220 2.4e-22 109.0 96 57.3
Duzib068G0813 Durio zibethinus HOM05D004701 ORTHO05D005220 5.4e-22 107.8 83 60.2
Aqoxy3G03462 Aquilegia oxysepala HOM05D004701 ORTHO05D005220 1.2e-21 106.7 76 64.5
QL10p017494 Quercus lobata HOM05D004701 ORTHO05D005220 1.6e-21 106.3 76 68.4
PGR083G0417 Punica granatum HOM05D004701 ORTHO05D005220 5.9e-21 104.4 79 64.6
Atru.chr9.198 Acer truncatum HOM05D004701 ORTHO05D005220 7.8e-21 104.0 85 60.0
ECA246G0122 Erigeron canadensis HOM05D004701 ORTHO05D005220 1.7e-20 102.8 85 55.3
Duzib205G0738 Durio zibethinus HOM05D004701 ORTHO05D005220 3.0e-20 102.1 90 56.7
Thecc.03G092900 Theobroma cacao HOM05D004701 ORTHO05D005220 3.0e-20 102.1 83 57.8
HanXRQChr05g0154901 Helianthus annuus HOM05D004701 ORTHO05D005220 8.6e-20 100.5 86 54.7
PSO832G0806 Papaver somniferum HOM05D004701 ORTHO05D005220 8.6e-20 100.5 79 58.2
Gohir.A03G067500 Gossypium hirsutum HOM05D004701 ORTHO05D005220 2.5e-19 99.0 83 57.8
Gohir.D03G094000 Gossypium hirsutum HOM05D004701 ORTHO05D005220 2.5e-19 99.0 83 57.8
Gorai.003G098100 Gossypium raimondii HOM05D004701 ORTHO05D005220 2.5e-19 99.0 83 57.8
Manes.14G080700 Manihot esculenta HOM05D004701 ORTHO05D005220 5.6e-19 97.8 87 51.7
Ciclev10019092m.g Citrus clementina HOM05D004701 ORTHO05D005220 7.3e-19 97.4 86 59.3
DCAR_010367 Daucus carota HOM05D004701 ORTHO05D005220 9.5e-19 97.1 85 51.8
PSO063G2323 Papaver somniferum HOM05D004701 ORTHO05D005220 9.5e-19 97.1 77 57.1
Lsat_1_v5_gn_5_21460 Lactuca sativa HOM05D004701 ORTHO05D005220 1.2e-18 96.7 93 51.6
Cc00_g08370 Coffea canephora HOM05D004701 ORTHO05D005220 2.8e-18 95.5 87 50.6
MD06G1196700 Malus domestica HOM05D004701 ORTHO05D005220 2.8e-18 95.5 81 56.8
AUR62008439 Chenopodium quinoa HOM05D004701 ORTHO05D005220 4.7e-18 94.7 92 52.2
Peaxi162Scf00274g00452 Petunia axillaris HOM05D004701 ORTHO05D005220 8.0e-18 94.0 92 47.8
EL10Ac5g11047 Beta vulgaris HOM05D004701 ORTHO05D005220 1.8e-17 92.8 92 50.0
CAN.G479.72 Capsicum annuum HOM05D004701 ORTHO05D005220 1.8e-17 92.8 87 47.1
FvH4_5g14650 Fragaria vesca HOM05D004701 ORTHO05D005220 2.3e-17 92.4 87 51.7
Nitab4.5_0005900g0110 Nicotiana tabacum HOM05D004701 ORTHO05D005220 2.3e-17 92.4 85 50.6
Sc12g0006470 Simmondsia chinensis HOM05D004701 ORTHO05D005220 2.3e-17 92.4 91 51.6
FAN18G0140 Fragaria x ananassa HOM05D004701 ORTHO05D005220 4.0e-17 91.7 86 53.5
RcHm_v2.0_Chr7g0181841 Rosa chinensis HOM05D004701 ORTHO05D005220 4.0e-17 91.7 88 52.3
AUR62021651 Chenopodium quinoa HOM05D004701 ORTHO05D005220 5.2e-17 91.3 91 50.5
Cpa.g.sc341.2 Carica papaya HOM05D004701 ORTHO05D005220 6.8e-17 90.9 83 57.8
Medtr3g435140 Medicago truncatula HOM05D004701 ORTHO05D005220 6.8e-17 90.9 89 53.9
Prupe.5G196200 Prunus persica HOM05D004701 ORTHO05D005220 6.8e-17 90.9 74 59.5
VMungo1309G2345 Vigna mungo HOM05D004701 ORTHO05D005220 1.2e-16 90.1 97 49.5
TWI81G0545 Tripterygium wilfordii HOM05D004701 ORTHO05D005220 1.5e-16 89.7 87 52.9
FAN08G0610 Fragaria x ananassa HOM05D004701 ORTHO05D005220 3.4e-16 88.6 87 48.3
Nitab4.5_0001211g0300 Nicotiana tabacum HOM05D004701 ORTHO05D005220 7.5e-16 87.4 85 49.4
FAN13G1597 Fragaria x ananassa HOM05D004701 ORTHO05D005220 1.3e-15 86.7 87 47.1
PGSC0003DMG400019522 Solanum tuberosum HOM05D004701 ORTHO05D005220 1.3e-15 86.7 85 44.7
CANSAT80G1745 Cannabis sativa HOM05D004701 ORTHO05D005220 2.2e-15 85.9 95 47.4
Migut.I00201 Erythranthe guttata HOM05D004701 ORTHO05D005220 2.9e-15 85.5 91 45.1
Ah.11g048260 Amaranthus hybridus HOM05D004701 ORTHO05D005220 3.7e-15 85.1 89 44.9
ATR0564G073 Amborella trichopoda HOM05D004701 ORTHO05D005220 6.4e-15 84.3 72 52.8
MD14G1203500 Malus domestica HOM05D004701 ORTHO05D005220 6.4e-15 84.3 81 51.9
Sopen03g034820 Solanum pennellii HOM05D004701 ORTHO05D005220 1.4e-14 83.2 87 43.7
Solyc03g115840.4 Solanum lycopersicum HOM05D004701 ORTHO05D005220 1.9e-14 82.8 87 43.7
TPR.G11816 Trifolium pratense HOM05D004701 ORTHO05D005220 1.9e-14 82.8 89 48.3
Lj1g0024661 Lotus japonicus HOM05D004701 ORTHO05D005220 2.4e-14 82.4 85 49.4
arahy.Tifrunner.gnm1.ann1.00I77L Arachis hypogaea HOM05D004701 ORTHO05D005220 3.2e-14 82.0 83 53.0
Phvul.009G185900 Phaseolus vulgaris HOM05D004701 ORTHO05D005220 3.2e-14 82.0 90 48.9
Hund02633 Selenicereus undatus HOM05D004701 ORTHO05D005220 4.1e-14 81.6 87 47.1
Glyma.06G195700 Glycine max HOM05D004701 ORTHO05D005220 9.2e-14 80.5 97 43.3
Ca_14653_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 1.2e-13 80.1 89 48.3
Psat5g195480 Pisum sativum HOM05D004701 ORTHO05D005220 1.2e-13 80.1 76 55.3
arahy.Tifrunner.gnm1.ann1.4DD1B6 Arachis hypogaea HOM05D004701 ORTHO05D005220 6.0e-13 77.8 77 50.6
arahy.Tifrunner.gnm1.ann1.UQ68S4 Arachis hypogaea HOM05D004701 ORTHO05D005220 6.0e-13 77.8 77 50.6
Aa31LG7G3460 Aethionema arabicum HOM05D004701 ORTHO05D005220 1.0e-12 77.0 86 51.2
Lj4g0017943 Lotus japonicus HOM05D004701 ORTHO05D005220 3.9e-12 75.1 86 45.3
MELO3C017186.2 Cucumis melo HOM05D004701 ORTHO05D005220 5.0e-12 74.7 82 50.0
Thhalv10006967m.g Eutrema salsugineum HOM05D004701 ORTHO05D005220 5.0e-12 74.7 81 51.9
SGA_v2.0_scaffold313G48342 Striga asiatica HOM05D004701 ORTHO05D005220 5.0e-12 74.7 77 49.4
CsaV3_1G002500 Cucumis sativus L. HOM05D004701 ORTHO05D005220 6.6e-12 74.3 97 48.5
Sp1g16680 Schrenkiella parvula HOM05D004701 ORTHO05D005220 8.6e-12 73.9 81 49.4
Lalb_Chr08g0235571 Lupinus albus HOM05D004701 ORTHO05D005220 1.1e-11 73.6 90 46.7
SalBow5G2872 Salvia bowleyana HOM05D004701 ORTHO05D005220 7.3e-11 70.9 73 46.6
Sed0001989 Sechium edule HOM05D004701 ORTHO05D005220 7.3e-11 70.9 81 50.6
AL1G31150 Arabidopsis lyrata HOM05D004701 ORTHO05D005220 9.5e-11 70.5 85 50.6
AT1G18700 Arabidopsis thaliana HOM05D004701 ORTHO05D005220 9.5e-11 70.5 87 50.6
THA.LOC104808258 Tarenaya hassleriana HOM05D004701 ORTHO05D005220 9.5e-11 70.5 77 48.1
Oeu052446.1 Olea europaea HOM05D004701 ORTHO05D005220 1.6e-10 69.7 89 41.6
Carub.0001s1833 Capsella rubella HOM05D004701 ORTHO05D005220 2.8e-10 68.9 73 50.7
BcaB03g14489 Brassica carinata HOM05D004701 ORTHO05D005220 1.1e-09 67.0 83 50.6
A09p59760 Brassica napus HOM05D004701 ORTHO05D005220 1.1e-09 67.0 75 50.7
BraA09t41353Z Brassica rapa HOM05D004701 ORTHO05D005220 2.3e-09 65.9 73 52.1
Os07g0632600 Oryza sativa ssp. japonica HOM05D004701 ORTHO05D005220 8.9e-09 63.9 99 39.4
HPP92_019783 Vanilla planifolia HOM05D004701 ORTHO05D005220 1.2e-08 63.5 83 37.3
BcaC07g41307 Brassica carinata HOM05D004701 ORTHO05D005220 1.5e-08 63.2 72 50.0
C08p43140 Brassica napus HOM05D004701 ORTHO05D005220 1.5e-08 63.2 72 50.0
BolC8t51869H Brassica oleracea HOM05D004701 ORTHO05D005220 1.5e-08 63.2 72 50.0


User provided reference genes

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