Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009826 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 9.8e-92 340.1 172 100.0
CSS0049337 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 6.8e-85 317.4 165 97.0
CSS0002866 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 4.4e-84 314.7 165 95.8
CSS0034024 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 4.6e-81 304.7 165 94.5
Actinidia27771 Actinidia chinensis HOM05D005184 ORTHO05D006222 3.9e-64 248.4 178 73.6
HanXRQChr04g0103681 Helianthus annuus HOM05D005184 ORTHO05D006222 6.2e-62 241.1 162 75.3
CANSAT01G1514 Cannabis sativa HOM05D005184 ORTHO05D006222 1.8e-61 239.6 172 73.3
Lsat_1_v5_gn_4_6340 Lactuca sativa HOM05D005184 ORTHO05D006222 5.2e-61 238.0 162 74.1
MSTRG.614 Avicennia marina HOM05D005184 ORTHO05D006222 6.9e-61 237.7 166 73.5
Nn4g22873 Nelumbo nucifera HOM05D005184 ORTHO05D006222 9.0e-61 237.3 177 69.5
Migut.E00145 Erythranthe guttata HOM05D005184 ORTHO05D006222 3.4e-60 235.3 159 72.3
Cfa009129 Carpinus fangiana HOM05D005184 ORTHO05D006222 5.8e-60 234.6 173 72.8
Oeu039485.1 Olea europaea HOM05D005184 ORTHO05D006222 9.9e-60 233.8 174 69.5
Manes.01G197300 Manihot esculenta HOM05D005184 ORTHO05D006222 2.2e-59 232.6 173 69.4
Rhsim12G0048500 Rhododendron simsii HOM05D005184 ORTHO05D006222 1.4e-58 229.9 193 66.3
Oeu040755.2 Olea europaea HOM05D005184 ORTHO05D006222 2.4e-58 229.2 171 69.0
CiPaw.05G149300 Carya illinoinensis HOM05D005184 ORTHO05D006222 4.2e-58 228.4 161 72.0
Cc11_g14330 Coffea canephora HOM05D005184 ORTHO05D006222 4.2e-58 228.4 173 69.9
ECA234G0428 Erigeron canadensis HOM05D005184 ORTHO05D003386 5.4e-58 228.0 159 72.3
COL.COLO4_19542 Corchorus olitorius HOM05D005184 ORTHO05D006222 9.3e-58 227.3 170 70.6
Potri.008G146200 Populus trichocarpa HOM05D005184 ORTHO05D006222 9.3e-58 227.3 173 68.8
RcHm_v2.0_Chr5g0030111 Rosa chinensis HOM05D005184 ORTHO05D006222 9.3e-58 227.3 162 69.8
Atru.chr11.1971 Acer truncatum HOM05D005184 ORTHO05D006222 2.7e-57 225.7 173 68.8
Cpa.g.sc5.359 Carica papaya HOM05D005184 ORTHO05D006222 3.5e-57 225.3 177 68.9
FvH4_4g34930 Fragaria vesca HOM05D005184 ORTHO05D006222 7.8e-57 224.2 163 67.5
TAR374G1061 Trochodendron aralioides HOM05D005184 ORTHO05D006222 1.0e-56 223.8 177 65.5
Gohir.D01G129700 Gossypium hirsutum HOM05D005184 ORTHO05D006222 1.7e-56 223.0 158 72.8
Potri.010G095601 Populus trichocarpa HOM05D005184 ORTHO05D006222 1.7e-56 223.0 173 67.6
CSS0033197 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.3e-56 222.6 165 67.9
Ciclev10032867m.g Citrus clementina HOM05D005184 ORTHO05D006222 3.0e-56 222.2 170 66.5
Phvul.003G054400 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 3.0e-56 222.2 160 71.2
Thecc.02G243600 Theobroma cacao HOM05D005184 ORTHO05D006222 3.9e-56 221.9 158 72.2
Gohir.A01G139200 Gossypium hirsutum HOM05D005184 ORTHO05D006222 6.6e-56 221.1 158 72.2
Ca_22770_v3 Cicer arietinum L. HOM05D005184 ORTHO05D006222 8.7e-56 220.7 161 70.2
VMungo0251G1371 Vigna mungo HOM05D005184 ORTHO05D006222 8.7e-56 220.7 157 71.3
Duzib268G0446 Durio zibethinus HOM05D005184 ORTHO05D006222 1.1e-55 220.3 158 72.2
Sc04g0008930 Simmondsia chinensis HOM05D005184 ORTHO05D006222 1.5e-55 219.9 175 66.9
Sabra10G0068200 Salix brachista HOM05D005184 ORTHO05D006222 5.6e-55 218.0 181 64.1
arahy.Tifrunner.gnm1.ann1.GIV1JF Arachis hypogaea HOM05D005184 ORTHO05D006222 9.6e-55 217.2 161 68.3
CsaV3_5G031800 Cucumis sativus L. HOM05D005184 ORTHO05D006222 9.6e-55 217.2 161 70.8
Medtr8g063230 Medicago truncatula HOM05D005184 ORTHO05D006222 9.6e-55 217.2 162 67.3
TWI18G1303 Tripterygium wilfordii HOM05D005184 ORTHO05D006222 9.6e-55 217.2 177 65.0
ClCG05G025100 Citrullus lanatus HOM05D005184 ORTHO05D006222 1.3e-54 216.9 161 70.8
PSO478G1620 Papaver somniferum HOM05D005184 ORTHO05D006222 1.3e-54 216.9 161 68.3
PGR119G0379 Punica granatum HOM05D005184 ORTHO05D006222 1.3e-54 216.9 173 65.3
Glyma.08G290400 Glycine max HOM05D005184 ORTHO05D006222 4.8e-54 214.9 161 67.1
Lj4g0016473 Lotus japonicus HOM05D005184 ORTHO05D006222 6.2e-54 214.5 161 67.7
Zm00001eb254250 Zea mays HOM05D005184 ORTHO05D006222 6.2e-54 214.5 174 60.3
Glyma.18G133800 Glycine max HOM05D005184 ORTHO05D006222 8.1e-54 214.2 157 68.2
Os02g0741900 Oryza sativa ssp. japonica HOM05D005184 ORTHO05D006222 1.4e-53 213.4 173 59.0
Zm00001eb194690 Zea mays HOM05D005184 ORTHO05D006222 1.4e-53 213.4 174 59.8
Eucgr.B02549 Eucalyptus grandis HOM05D005184 ORTHO05D006222 1.8e-53 213.0 157 66.9
PSO017G3562 Papaver somniferum HOM05D005184 ORTHO05D006222 2.4e-53 212.6 161 67.1
Lalb_Chr11g0071121 Lupinus albus HOM05D005184 ORTHO05D006222 4.0e-53 211.8 157 68.2
Aqoxy3G03072 Aquilegia oxysepala HOM05D005184 ORTHO05D006222 9.0e-53 210.7 165 64.2
MELO3C012019.2 Cucumis melo HOM05D005184 ORTHO05D006222 2.6e-52 209.1 148 72.3
TPR.G32980 Trifolium pratense HOM05D005184 ORTHO05D006222 5.8e-52 208.0 165 64.8
MD13G1087800 Malus domestica HOM05D005184 ORTHO05D006222 2.2e-51 206.1 166 63.3
unitig_749.g13268 Utricularia gibba HOM05D005184 ORTHO05D006222 2.2e-51 206.1 193 58.5
Gorai.002G161300 Gossypium raimondii HOM05D005184 ORTHO05D006222 3.8e-51 205.3 193 59.6
MD16G1088100 Malus domestica HOM05D005184 ORTHO05D006222 4.9e-51 204.9 165 64.8
Medtr8g461280 Medicago truncatula HOM05D005184 ORTHO05D006222 4.9e-51 204.9 155 65.2
Haze_12160 Corylus avellana HOM05D005184 ORTHO05D006222 8.4e-51 204.1 173 64.7
Mapoly0065s0085 Marchantia polymorpha HOM05D005184 ORTHO05D006222 9.3e-50 200.7 161 62.7
TAR622G1169 Trochodendron aralioides HOM05D005184 ORTHO05D006222 7.9e-49 197.6 170 62.4
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 3.0e-48 195.7 195 56.9
FAN17G0007 Fragaria x ananassa HOM05D005184 ORTHO05D006222 1.1e-47 193.7 163 61.3
Psat4g125480 Pisum sativum HOM05D005184 ORTHO05D006222 1.5e-47 193.4 162 63.0
arahy.Tifrunner.gnm1.ann1.G4BVC6 Arachis hypogaea HOM05D005184 ORTHO05D006222 2.5e-47 192.6 220 50.5
FAN12G2936 Fragaria x ananassa HOM05D005184 ORTHO05D006222 5.6e-47 191.4 163 60.1
FAN22G1244 Fragaria x ananassa HOM05D005184 ORTHO05D006222 1.3e-46 190.3 163 60.7
FAN07G0314 Fragaria x ananassa HOM05D005184 ORTHO05D006222 4.8e-46 188.3 163 59.5
RcHm_v2.0_Chr1g0347741 Rosa chinensis HOM05D005184 ORTHO05D006222 3.1e-45 185.7 147 64.6
GSVIVG01020163001 Vitis vinifera HOM05D005184 ORTHO05D006222 6.9e-45 184.5 134 72.4
RcHm_v2.0_Chr3g0467191 Rosa chinensis HOM05D005184 ORTHO05D006222 5.8e-44 181.4 163 59.5
CDE06G1803 Ceratophyllum demersum HOM05D005184 ORTHO05D006222 3.8e-43 178.7 165 59.4
CBR_g30806 Chara braunii HOM05D005184 ORTHO05D006222 3.8e-43 178.7 173 53.8
CBR_g30798 Chara braunii HOM05D005184 ORTHO05D006222 6.4e-43 177.9 173 53.8
Lj3A1049G57 Lonicera japonica HOM05D005184 ORTHO05D006222 6.4e-43 177.9 129 72.9
Pp3c1_7410 Physcomitrium patens HOM05D005184 ORTHO05D006222 6.4e-43 177.9 165 53.9
HPP92_015265 Vanilla planifolia HOM05D000076 ORTHO05D002949 8.4e-43 177.6 170 55.3
DCAR_007099 Daucus carota HOM05D005184 ORTHO05D006222 1.4e-42 176.8 172 59.3
SGA_v2.0_scaffold166G38348 Striga asiatica HOM05D005184 ORTHO05D006222 2.4e-42 176.0 129 70.5
THA.LOC104808902 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 3.2e-42 175.6 159 54.1
THA.LOC104822060 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 5.5e-42 174.9 163 54.0
AagrBONN_evm.TU.Sc2ySwM_344.3206 Anthoceros agrestis HOM05D005184 ORTHO05D006222 7.1e-42 174.5 160 55.6
AUR62005318 Chenopodium quinoa HOM05D005184 ORTHO05D006222 1.0e-40 170.6 136 68.4
AT1G24050 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 3.0e-40 169.1 159 52.8
AL1G37810 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 3.9e-40 168.7 159 52.8
RcHm_v2.0_Chr2g0143691 Rosa chinensis HOM05D005184 ORTHO05D006222 6.7e-40 167.9 141 62.4
Carub.0001s2347 Capsella rubella HOM05D005184 ORTHO05D006222 1.9e-39 166.4 159 52.2
Hund05960 Selenicereus undatus HOM05D005184 ORTHO05D006222 4.8e-38 161.8 120 70.8
ATR1149G050 Amborella trichopoda HOM05D005184 ORTHO05D006222 8.2e-38 161.0 130 63.1
Aa31LG7G7840 Aethionema arabicum HOM05D005184 ORTHO05D006222 1.1e-37 160.6 159 50.9
RcHm_v2.0_Chr7g0224821 Rosa chinensis HOM05D005184 ORTHO05D006222 1.1e-37 160.6 124 66.9
Nitab4.5_0000031g0060 Nicotiana tabacum HOM05D005184 ORTHO05D006222 2.4e-37 159.5 182 51.6
Sed0020204 Sechium edule HOM05D005184 ORTHO05D006222 1.2e-36 157.1 121 71.9
Sp1g21380 Schrenkiella parvula HOM05D005184 ORTHO05D006222 2.0e-36 156.4 159 50.3
SMO117G0191 Selaginella moellendorffii HOM05D005184 ORTHO05D006222 4.5e-36 155.2 173 49.1
BcaC05g26302 Brassica carinata HOM05D005184 ORTHO05D006222 5.8e-36 154.8 162 50.0
CSS0000441 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.2e-35 152.9 125 66.4
Thhalv10009785m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 2.9e-35 152.5 158 49.4
C05p23190 Brassica napus HOM05D001690 ORTHO05D009096 6.5e-35 151.4 163 50.3
BcaB07g32379 Brassica carinata HOM05D005184 ORTHO05D006222 1.1e-34 150.6 158 50.0
Duzib248G0500 Durio zibethinus HOM05D005184 ORTHO05D006222 1.1e-34 150.6 131 62.6
BolC5t31020H Brassica oleracea HOM05D005184 ORTHO05D006222 1.4e-34 150.2 163 49.7
Phvul.003G054101 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 1.4e-34 150.2 124 62.9
A09p40800 Brassica napus HOM05D001690 ORTHO05D009096 2.5e-34 149.4 167 49.1
BraA09t39575Z Brassica rapa HOM05D005184 ORTHO05D006222 3.2e-34 149.1 163 49.7
RcHm_v2.0_Chr4g0444381 Rosa chinensis HOM05D005184 ORTHO05D006222 1.6e-33 146.7 96 75.0
C07p20080 Brassica napus HOM05D005184 ORTHO05D006222 7.9e-33 144.4 170 46.5
BolC7t42528H Brassica oleracea HOM05D005184 ORTHO05D006222 7.9e-33 144.4 170 46.5
CARHR024350 Cardamine hirsuta HOM05D005184 ORTHO05D006222 3.0e-32 142.5 137 52.6
BraA07t29118Z Brassica rapa HOM05D005184 ORTHO05D006222 1.1e-31 140.6 160 45.6
Pp3c7_23840 Physcomitrium patens HOM05D005184 ORTHO05D006222 7.4e-31 137.9 134 54.5
Thhalv10019170m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 3.7e-30 135.6 174 42.5
Prupe.1G258500 Prunus persica HOM05D005184 ORTHO05D006222 1.1e-29 134.0 125 59.2
Cc02_g24860 Coffea canephora HOM05D005184 ORTHO05D006222 2.0e-28 129.8 118 61.0
Sp5g25350 Schrenkiella parvula HOM05D005184 ORTHO05D006222 5.9e-28 128.3 158 43.0
BraA02t06699Z Brassica rapa HOM05D005184 ORTHO05D006222 1.0e-27 127.5 160 43.8
BcaC03g15168 Brassica carinata HOM05D005184 ORTHO05D006222 2.2e-27 126.3 164 43.3
C02p27410 Brassica napus HOM05D005184 ORTHO05D006222 3.8e-27 125.6 164 43.3
BolC2t08801H Brassica oleracea HOM05D005184 ORTHO05D006222 3.8e-27 125.6 164 43.3
EL10Ac6g13619 Beta vulgaris HOM05D005184 ORTHO05D006222 1.1e-26 124.0 156 49.4
A02p16400 Brassica napus HOM05D005184 ORTHO05D006222 1.4e-26 123.6 177 40.7
Carub.0002s1692 Capsella rubella HOM05D005184 ORTHO05D006222 1.9e-26 123.2 156 42.3
AL2G29520 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 5.5e-26 121.7 155 41.9
vmacro22616 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 1.6e-25 120.2 83 78.3
CARHR063340 Cardamine hirsuta HOM05D005184 ORTHO05D006222 3.6e-25 119.0 160 40.6
BcaC06g35075 Brassica carinata HOM05D005184 ORTHO05D006222 4.6e-25 118.6 142 47.9
BcaB03g14122 Brassica carinata HOM05D005184 ORTHO05D006222 1.1e-23 114.0 108 52.8
AT1G70220 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 5.7e-23 111.7 160 40.0
Cc00_g31660 Coffea canephora HOM05D005184 ORTHO05D006222 1.4e-21 107.1 132 50.0
Cre10.g421850 Chlamydomonas reinhardtii HOM05D005184 ORTHO05D006222 3.4e-20 102.4 141 38.3
BcaB05g24540 Brassica carinata HOM05D005184 ORTHO05D006222 2.9e-19 99.4 118 44.9
A07p13470 Brassica napus HOM05D005184 ORTHO05D006222 5.1e-16 88.6 160 33.8
BcaB02g09680 Brassica carinata HOM05D000630 ORTHO05D014858 1.7e-14 83.6 63 63.5
Cc00_g05590 Coffea canephora HOM05D005184 ORTHO05D006222 1.7e-14 83.6 89 51.7
QL03p062286 Quercus lobata HOM05D005184 ORTHO05D006222 2.9e-11 72.8 58 62.1
MCO16G256 Micromonas commoda HOM05D005184 ORTHO05D006222 6.5e-11 71.6 153 31.4
PRCOL_00005775 Prasinoderma coloniale HOM05D005184 ORTHO05D006222 8.5e-11 71.2 83 43.4
Cc00_g11840 Coffea canephora HOM05D001087 ORTHO05D006222 4.2e-10 68.9 78 51.3
Nitab4.5_0000925g0110 Nicotiana tabacum HOM05D005184 ORTHO05D006222 5.5e-10 68.6 40 75.0
Solyc04g025670.4 Solanum lycopersicum HOM05D005184 ORTHO05D006222 1.6e-09 67.0 52 63.5
vmacro22617 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 3.6e-09 65.9 40 72.5
CSS0046251 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.0e-08 64.3 40 72.5
Peaxi162Scf00792g00021 Petunia axillaris HOM05D005184 ORTHO05D006222 3.9e-08 62.4 40 67.5
Prupe.1G258600 Prunus persica HOM05D005184 ORTHO05D006222 3.9e-08 62.4 40 67.5
RcHm_v2.0_Chr4g0444371 Rosa chinensis HOM05D005184 ORTHO05D006222 3.7e-06 55.8 41 56.1


User provided reference genes

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