Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009821 Camellia sinensis var. sinensis HOM05D008757 ORTHO05D010583 4.5e-203 711.1 369 100.0
CSS0028194 Camellia sinensis var. sinensis HOM05D008757 ORTHO05D010583 1.2e-179 633.3 369 90.5
Actinidia25837 Actinidia chinensis HOM05D008757 ORTHO05D010583 9.4e-100 367.9 353 59.5
Rhsim01G0289500 Rhododendron simsii HOM05D008757 ORTHO05D010583 5.4e-87 325.5 438 47.3
vmacro15123 Vaccinium macrocarpon HOM05D008757 ORTHO05D010583 1.6e-67 260.8 242 61.2
Dinv10074 Davidia involucrata HOM05D008757 ORTHO05D010583 5.2e-66 255.8 362 45.0
Cfa005830 Carpinus fangiana HOM05D008757 ORTHO05D010583 4.9e-64 249.2 319 46.4
TAR365G0134 Trochodendron aralioides HOM05D008757 ORTHO05D010583 2.4e-63 246.9 374 43.3
QL12p028983 Quercus lobata HOM05D008757 ORTHO05D010583 2.1e-62 243.8 323 45.8
Lj1A19T23 Lonicera japonica HOM05D008757 ORTHO05D010583 9.5e-60 235.0 370 42.7
Sabra02G0159400 Salix brachista HOM05D008757 ORTHO05D010583 3.7e-56 223.0 422 36.7
Potri.002G198200 Populus trichocarpa HOM05D008757 ORTHO05D010583 7.1e-55 218.8 420 35.2
Nitab4.5_0000116g0030 Nicotiana tabacum HOM05D008757 ORTHO05D010583 2.7e-54 216.9 326 42.0
TWI18G1222 Tripterygium wilfordii HOM05D008757 ORTHO05D010583 2.7e-54 216.9 313 41.5
Migut.D00097 Erythranthe guttata HOM05D008757 ORTHO05D010583 4.6e-54 216.1 396 35.9
Gohir.A11G110800 Gossypium hirsutum HOM05D008757 ORTHO05D010583 3.0e-53 213.4 311 42.8
Haze_05014 Corylus avellana HOM05D008757 ORTHO05D010583 6.6e-53 212.2 318 42.8
DCAR_012364 Daucus carota HOM05D008757 ORTHO05D010583 7.3e-52 208.8 368 36.1
Sopen01g031410 Solanum pennellii HOM05D008757 ORTHO05D010583 3.6e-51 206.5 350 38.3
Solyc01g079630.3 Solanum lycopersicum HOM05D008757 ORTHO05D010583 6.2e-51 205.7 351 37.6
Gohir.D11G115900 Gossypium hirsutum HOM05D008757 ORTHO05D010583 1.8e-50 204.1 311 41.5
COL.COLO4_23259 Corchorus olitorius HOM05D002981 ORTHO05D003725 2.4e-50 203.8 233 48.1
Hma1.2p1_1302F.1_g274300 Hydrangea macrophylla HOM05D008757 ORTHO05D010583 8.9e-50 201.8 162 64.2
Nitab4.5_0000906g0100 Nicotiana tabacum HOM05D008757 ORTHO05D010583 3.4e-49 199.9 405 37.0
MSTRG.18114 Avicennia marina HOM05D008757 ORTHO05D010583 4.4e-49 199.5 347 34.9
Peaxi162Scf00001g00251 Petunia axillaris HOM05D008757 ORTHO05D010583 2.9e-48 196.8 311 40.8
SGA_v2.0_scaffold334G49056 Striga asiatica HOM05D008757 ORTHO05D010583 1.0e-45 188.3 353 36.5
ATR0706G029 Amborella trichopoda HOM05D008757 ORTHO05D010583 6.9e-42 175.6 299 38.1
GSVIVG01028089001 Vitis vinifera HOM05D008757 ORTHO05D010583 2.2e-40 170.6 358 37.4
Cc08_g11800 Coffea canephora HOM05D008757 ORTHO05D010583 3.8e-40 169.9 299 39.1
Gorai.007G124100 Gossypium raimondii HOM05D008757 ORTHO05D010583 4.9e-40 169.5 276 39.5
Aqoxy3G01114 Aquilegia oxysepala HOM05D008757 ORTHO05D010583 1.4e-39 167.9 321 35.2
Prupe.8G269900 Prunus persica HOM05D008757 ORTHO05D010583 1.4e-39 167.9 160 53.8
FAN18G1448 Fragaria x ananassa HOM05D008757 ORTHO05D010583 3.5e-38 163.3 272 37.9
FAN08G1681 Fragaria x ananassa HOM05D008757 ORTHO05D010583 1.3e-37 161.4 272 37.5
FAN04G1474 Fragaria x ananassa HOM05D008757 ORTHO05D010583 1.9e-36 157.5 272 37.9
FAN13G0940 Fragaria x ananassa HOM05D008757 ORTHO05D010583 9.6e-36 155.2 272 37.5
FvH4_5g39560 Fragaria vesca HOM05D008757 ORTHO05D010583 1.3e-35 154.8 272 37.9
MD11G1316900 Malus domestica HOM05D008757 ORTHO05D010583 1.6e-35 154.5 287 36.9
RcHm_v2.0_Chr7g0241871 Rosa chinensis HOM05D008757 ORTHO05D010583 2.1e-35 154.1 271 38.0
SEGI_31757 Sequoiadendron giganteum HOM05D008757 ORTHO05D010583 6.2e-27 125.9 306 26.8
Thecc.01G310700 Theobroma cacao HOM05D008757 ORTHO05D010583 4.9e-24 116.3 104 60.6
THA.LOC104817467 Tarenaya hassleriana HOM05D012658 ORTHO05D010583 4.6e-22 109.8 298 31.9
BcaC07g40736 Brassica carinata HOM05D012658 ORTHO05D010583 2.1e-19 100.9 394 26.6
AL5G45370 Arabidopsis lyrata HOM05D012658 ORTHO05D010583 2.8e-19 100.5 393 26.5
BraA09t40861Z Brassica rapa HOM05D012658 ORTHO05D010583 6.2e-19 99.4 135 40.7
BcaC07g40779 Brassica carinata HOM05D012658 ORTHO05D010583 1.4e-18 98.2 135 40.0
BolC8t51315H Brassica oleracea HOM05D012658 ORTHO05D010583 1.4e-18 98.2 138 42.0
CARHR172890 Cardamine hirsuta HOM05D012658 ORTHO05D010583 1.4e-18 98.2 282 29.4
A09p54480 Brassica napus HOM05D012658 ORTHO05D010583 1.8e-18 97.8 135 40.7
Carub.0005s2928 Capsella rubella HOM05D012658 ORTHO05D010583 2.4e-18 97.4 135 40.0
AT3G62620 Arabidopsis thaliana HOM05D012658 ORTHO05D010583 2.0e-17 94.4 130 39.2
Thhalv10006051m.g Eutrema salsugineum HOM05D012658 ORTHO05D010583 2.0e-17 94.4 161 36.0
C08p37370 Brassica napus HOM05D012658 ORTHO05D010583 2.6e-17 94.0 138 41.3
PGR119G0138 Punica granatum HOM05D008757 ORTHO05D010583 4.5e-17 93.2 262 32.4
A05p34600 Brassica napus HOM05D012658 ORTHO05D010583 1.7e-16 91.3 142 39.4
Pp3c5_17310 Physcomitrium patens HOM05D008307 ORTHO05D010374 6.7e-13 79.3 197 26.9
SEGI_00673 Sequoiadendron giganteum HOM05D008307 ORTHO05D010374 2.2e-11 74.3 146 28.8
Pp3c6_16530 Physcomitrium patens HOM05D008307 ORTHO05D010374 1.7e-08 64.7 242 22.7
ATR0736G143 Amborella trichopoda HOM05D008307 ORTHO05D010374 2.7e-06 57.4 146 26.0


User provided reference genes

Program Settings