Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009803 Camellia sinensis var. sinensis HOM05D001944 ORTHO05D017225 1.1e-177 627.1 480 100.0
CSS0041121 Camellia sinensis var. sinensis HOM05D001944 ORTHO05D017225 8.9e-167 590.9 507 84.8
Dinv37298 Davidia involucrata HOM05D001944 ORTHO05D002405 2.6e-49 200.7 200 56.0
vmacro20024 Vaccinium macrocarpon HOM05D001944 ORTHO05D017225 3.8e-32 143.7 167 53.3
TAR636G3431 Trochodendron aralioides HOM05D001944 ORTHO05D002405 2.1e-30 137.9 198 41.9
Actinidia19662 Actinidia chinensis HOM05D001944 ORTHO05D002405 3.1e-26 124.0 255 38.8
Rhsim05G0179600 Rhododendron simsii HOM05D001944 ORTHO05D002405 5.3e-26 123.2 204 43.1
TAR369G0775 Trochodendron aralioides HOM05D001944 ORTHO05D002405 1.7e-24 118.2 181 40.3
QL07p044103 Quercus lobata HOM05D001944 ORTHO05D002405 3.2e-23 114.0 154 45.5
QL93p2013_0009 Quercus lobata HOM05D001944 ORTHO05D002405 3.2e-23 114.0 169 42.6
TAR633G2605 Trochodendron aralioides HOM05D001944 ORTHO05D002405 1.0e-21 109.0 170 41.2
GSVIVG01025215001 Vitis vinifera HOM05D001944 ORTHO05D002405 1.5e-20 105.1 201 39.3
Cc06_g04010 Coffea canephora HOM05D001944 ORTHO05D002405 5.6e-20 103.2 155 40.0
Sopen10g005720 Solanum pennellii HOM05D001944 ORTHO05D002405 2.1e-19 101.3 115 47.0
PGSC0003DMG400019409 Solanum tuberosum HOM05D001944 ORTHO05D002405 1.4e-18 98.6 177 36.2
Thecc.09G343900 Theobroma cacao HOM05D001944 ORTHO05D002405 1.4e-18 98.6 160 38.8
Solyc10g011940.1 Solanum lycopersicum HOM05D001944 ORTHO05D002405 3.1e-18 97.4 173 35.8
Duzib168G0647 Durio zibethinus HOM05D001944 ORTHO05D002405 4.0e-18 97.1 175 41.1
COL.COLO4_18305 Corchorus olitorius HOM05D001944 ORTHO05D002405 9.0e-18 95.9 163 41.1
Gohir.A08G199401 Gossypium hirsutum HOM05D001944 ORTHO05D002405 9.0e-18 95.9 157 38.2
Thecc.05G062600 Theobroma cacao HOM05D001944 ORTHO05D002405 9.0e-18 95.9 141 42.6
Duzib128G0909 Durio zibethinus HOM05D001944 ORTHO05D002405 1.5e-17 95.1 182 37.4
Aqoxy1G01204 Aquilegia oxysepala HOM05D001944 ORTHO05D002405 2.6e-17 94.4 156 39.1
Manes.03G122401 Manihot esculenta HOM05D001944 ORTHO05D002405 2.6e-17 94.4 209 34.9
Ca_01379_v3 Cicer arietinum L. HOM05D001944 ORTHO05D002405 3.4e-17 94.0 216 36.6
Ca_01395_v3 Cicer arietinum L. HOM05D001944 ORTHO05D002405 3.4e-17 94.0 216 36.6
Dinv01067 Davidia involucrata HOM05D001944 ORTHO05D002405 3.4e-17 94.0 151 38.4
Gorai.004G230500 Gossypium raimondii HOM05D001944 ORTHO05D002405 5.8e-17 93.2 160 37.5
Medtr2g095030 Medicago truncatula HOM05D001944 ORTHO05D002405 5.8e-17 93.2 199 37.2
Nitab4.5_0005320g0010 Nicotiana tabacum HOM05D001944 ORTHO05D002405 5.8e-17 93.2 190 36.8
Nitab4.5_0000101g0280 Nicotiana tabacum HOM05D001944 ORTHO05D002405 4.9e-16 90.1 210 35.2
Cfa011296 Carpinus fangiana HOM05D001944 ORTHO05D002405 6.4e-16 89.7 188 36.2
CSS0012038 Camellia sinensis var. sinensis HOM05D001944 ORTHO05D002405 1.9e-15 88.2 153 38.6
Dinv32719 Davidia involucrata HOM05D001944 ORTHO05D002405 1.9e-15 88.2 152 38.2
EL10Ac7g16595 Beta vulgaris HOM05D001944 ORTHO05D002405 2.4e-15 87.8 172 32.0
Peaxi162Scf00123g00910 Petunia axillaris HOM05D001944 ORTHO05D002405 3.2e-15 87.4 227 34.8
Actinidia03719 Actinidia chinensis HOM05D001944 ORTHO05D002405 7.1e-15 86.3 154 39.0
Oeu036621.1 Olea europaea HOM05D001944 ORTHO05D002405 1.2e-14 85.5 207 32.4
TWI74G0797 Tripterygium wilfordii HOM05D001944 ORTHO05D002405 2.1e-14 84.7 185 36.2
Nitab4.5_0000181g0180 Nicotiana tabacum HOM05D001944 ORTHO05D002405 2.7e-14 84.3 210 34.3
Actinidia20444 Actinidia chinensis HOM05D001944 ORTHO05D002405 6.0e-14 83.2 158 36.7
Lsat_1_v5_gn_1_53241 Lactuca sativa HOM05D001944 ORTHO05D002405 6.0e-14 83.2 115 40.9
Nn2g13727 Nelumbo nucifera HOM05D001944 ORTHO05D002405 6.0e-14 83.2 125 40.0
RcHm_v2.0_Chr5g0058411 Rosa chinensis HOM05D001944 ORTHO05D002405 6.0e-14 83.2 143 38.5
PGR102G2473 Punica granatum HOM05D001944 ORTHO05D002405 1.0e-13 82.4 149 36.2
Gorai.009G108800 Gossypium raimondii HOM05D001944 ORTHO05D002405 1.3e-13 82.0 143 38.5
TWI79G1706 Tripterygium wilfordii HOM05D001944 ORTHO05D002405 1.3e-13 82.0 120 42.5
Aqoxy7G00183 Aquilegia oxysepala HOM05D001944 ORTHO05D002405 1.8e-13 81.6 173 34.1
Nitab4.5_0006619g0020 Nicotiana tabacum HOM05D001944 ORTHO05D002405 1.8e-13 81.6 212 33.0
Gohir.D05G104800 Gossypium hirsutum HOM05D001944 ORTHO05D002405 2.3e-13 81.3 143 38.5
QL01p026770 Quercus lobata HOM05D001944 ORTHO05D002405 2.3e-13 81.3 156 33.3
Sopen06g005090 Solanum pennellii HOM05D001944 ORTHO05D002405 3.0e-13 80.9 141 41.1
CSS0007832 Camellia sinensis var. sinensis HOM05D001944 ORTHO05D002405 3.9e-13 80.5 175 34.3
Gohir.A05G105000 Gossypium hirsutum HOM05D001944 ORTHO05D002405 3.9e-13 80.5 145 37.9
Hma1.2p1_0307F.1_g119910 Hydrangea macrophylla HOM05D001944 ORTHO05D002405 3.9e-13 80.5 194 34.0
Lsat_1_v5_gn_1_53160 Lactuca sativa HOM05D001944 ORTHO05D002405 5.1e-13 80.1 209 31.6
Sabra05G0007500 Salix brachista HOM05D001944 ORTHO05D002405 5.1e-13 80.1 150 36.7
TPR.G11481 Trifolium pratense HOM05D001944 ORTHO05D002405 5.1e-13 80.1 186 34.4
Cc01_g10870 Coffea canephora HOM05D001944 ORTHO05D002405 6.7e-13 79.7 179 36.3
Lj1A201T36 Lonicera japonica HOM05D001944 ORTHO05D002405 6.7e-13 79.7 100 42.0
Peaxi162Scf00167g00092 Petunia axillaris HOM05D001944 ORTHO05D002405 6.7e-13 79.7 138 37.7
Sc21g0003900 Simmondsia chinensis HOM05D001944 ORTHO05D002405 8.7e-13 79.3 162 34.6
Psat5g279720 Pisum sativum HOM05D001944 ORTHO05D002405 1.1e-12 79.0 222 33.3
FAN21G2742 Fragaria x ananassa HOM05D001944 ORTHO05D002405 1.5e-12 78.6 162 34.6
Potri.004G212700 Populus trichocarpa HOM05D001944 ORTHO05D002405 1.5e-12 78.6 164 35.4
Solyc06g010240.3 Solanum lycopersicum HOM05D001944 ORTHO05D002405 1.9e-12 78.2 141 40.4
SGA_v2.0_scaffold40G15544 Striga asiatica HOM05D001944 ORTHO05D002405 2.5e-12 77.8 182 34.6
Nn2g11517 Nelumbo nucifera HOM05D001944 ORTHO05D002405 3.3e-12 77.4 115 37.4
Prupe.6G104600 Prunus persica HOM05D001944 ORTHO05D002405 3.3e-12 77.4 150 34.7
PSO339G1466 Papaver somniferum HOM05D001944 ORTHO05D002405 4.3e-12 77.0 147 32.0
FAN16G2569 Fragaria x ananassa HOM05D001944 ORTHO05D002405 5.6e-12 76.6 201 31.3
Potri.013G006000 Populus trichocarpa HOM05D001944 ORTHO05D002405 5.6e-12 76.6 215 31.6
Sed0024562 Sechium edule HOM05D001944 ORTHO05D002405 5.6e-12 76.6 108 39.8
SGA_v2.0_scaffold40G15535 Striga asiatica HOM05D001944 ORTHO05D017225 7.4e-12 76.3 145 35.9
Ciclev10027663m.g Citrus clementina HOM05D001944 ORTHO05D002405 1.3e-11 75.5 212 31.6
FvH4_3g31740 Fragaria vesca HOM05D001944 ORTHO05D002405 1.3e-11 75.5 162 34.0
FAN11G3960 Fragaria x ananassa HOM05D001944 ORTHO05D002405 1.3e-11 75.5 162 34.0
Lj3g0013525 Lotus japonicus HOM05D001944 ORTHO05D002405 1.3e-11 75.5 166 33.7
SalBow3G2448 Salvia bowleyana HOM05D001944 ORTHO05D002405 1.3e-11 75.5 89 43.8
MD11G1139900 Malus domestica HOM05D001944 ORTHO05D002405 1.6e-11 75.1 152 32.2
Migut.J00530 Erythranthe guttata HOM05D001944 ORTHO05D017225 2.1e-11 74.7 150 36.0
HanXRQChr13g0405021 Helianthus annuus HOM05D001944 ORTHO05D002405 2.1e-11 74.7 94 42.6
Lj2C1021G5 Lonicera japonica HOM05D001944 ORTHO05D002405 2.1e-11 74.7 154 35.7
Lalb_Chr01g0004401 Lupinus albus HOM05D001944 ORTHO05D011318 2.1e-11 74.7 154 35.1
PSO063G0478 Papaver somniferum HOM05D001944 ORTHO05D002405 2.1e-11 74.7 147 33.3
CAN.G171.6 Capsicum annuum HOM05D001944 ORTHO05D002405 2.8e-11 74.3 201 32.3
Potri.005G010133 Populus trichocarpa HOM05D001944 ORTHO05D002405 3.7e-11 73.9 170 34.7
Hund01491 Selenicereus undatus HOM05D001944 ORTHO05D002405 3.7e-11 73.9 163 35.6
HPP92_003456 Vanilla planifolia HOM05D041147 ORTHO05D017225 3.7e-11 73.9 171 32.2
MD11G1140000 Malus domestica HOM05D001944 ORTHO05D002405 4.8e-11 73.6 163 31.9
Peaxi162Scf00948g00114 Petunia axillaris HOM05D001944 ORTHO05D002405 4.8e-11 73.6 163 35.0
HPP92_003459 Vanilla planifolia HOM05D041147 ORTHO05D017225 6.2e-11 73.2 163 32.5
Cpa.g.sc311.2 Carica papaya HOM05D001944 ORTHO05D002405 8.1e-11 72.8 134 34.3
Oeu056302.1 Olea europaea HOM05D001944 ORTHO05D002405 1.1e-10 72.4 100 41.0
TWI31G0996 Tripterygium wilfordii HOM05D001944 ORTHO05D002405 1.4e-10 72.0 169 33.1
HanXRQChr13g0421871 Helianthus annuus HOM05D001944 ORTHO05D002405 1.8e-10 71.6 91 42.9
MD03G1121600 Malus domestica HOM05D001944 ORTHO05D002405 2.4e-10 71.2 144 33.3
EL10Ac9g22555 Beta vulgaris HOM05D001944 ORTHO05D002405 4.0e-10 70.5 195 29.2
Lalb_Chr19g0137131 Lupinus albus HOM05D001944 ORTHO05D011318 4.0e-10 70.5 154 30.5
MELO3C004905.2 Cucumis melo HOM05D001944 ORTHO05D002405 5.3e-10 70.1 87 43.7
Nitab4.5_0006532g0030 Nicotiana tabacum HOM05D001944 ORTHO05D002405 6.9e-10 69.7 132 40.2
ATR0048G049 Amborella trichopoda HOM05D001944 ORTHO05D002405 9.0e-10 69.3 173 33.5
arahy.Tifrunner.gnm1.ann1.ST0ZZW Arachis hypogaea HOM05D001944 ORTHO05D011318 1.2e-09 68.9 195 28.7
ClCG03G002980 Citrullus lanatus HOM05D001944 ORTHO05D002405 1.2e-09 68.9 113 39.8
CiPaw.14G085200 Carya illinoinensis HOM05D001944 ORTHO05D002405 1.5e-09 68.6 200 29.0
Glyma.12G077400 Glycine max HOM05D001944 ORTHO05D011318 1.5e-09 68.6 138 34.8
Oeu013469.1 Olea europaea HOM05D001944 ORTHO05D002405 2.0e-09 68.2 110 35.5
Sopen11g028320 Solanum pennellii HOM05D001944 ORTHO05D002405 2.6e-09 67.8 155 36.1
arahy.Tifrunner.gnm1.ann1.D4VV12 Arachis hypogaea HOM05D001944 ORTHO05D002405 4.5e-09 67.0 194 28.9
arahy.Tifrunner.gnm1.ann1.H0XM2A Arachis hypogaea HOM05D001944 ORTHO05D011318 4.5e-09 67.0 162 30.9
CsaV3_1G013920 Cucumis sativus L. HOM05D001944 ORTHO05D002405 5.8e-09 66.6 87 42.5
Actinidia07154 Actinidia chinensis HOM05D001944 ORTHO05D002405 7.6e-09 66.2 158 32.3
DCAR_022760 Daucus carota HOM05D001944 ORTHO05D002405 7.6e-09 66.2 191 31.4
Lalb_Chr24g0394751 Lupinus albus HOM05D001944 ORTHO05D002405 1.7e-08 65.1 173 33.5
Nitab4.5_0000602g0020 Nicotiana tabacum HOM05D001944 ORTHO05D002405 2.2e-08 64.7 205 33.2
PSO675G7498 Papaver somniferum HOM05D001944 ORTHO05D002405 2.2e-08 64.7 82 40.2
Psat7g192240 Pisum sativum HOM05D001944 ORTHO05D011318 2.2e-08 64.7 95 37.9
Sc20g0005300 Simmondsia chinensis HOM05D001944 ORTHO05D002405 2.2e-08 64.7 141 35.5
arahy.Tifrunner.gnm1.ann1.02PMC1 Arachis hypogaea HOM05D001944 ORTHO05D002405 2.9e-08 64.3 177 29.4
CAN.G363.5 Capsicum annuum HOM05D001944 ORTHO05D002405 2.9e-08 64.3 100 38.0
ECA248G2804 Erigeron canadensis HOM05D001944 ORTHO05D002405 2.9e-08 64.3 90 42.2
Ca_19290_v3 Cicer arietinum L. HOM05D001944 ORTHO05D011318 3.8e-08 63.9 189 29.6
ECA248G2037 Erigeron canadensis HOM05D001944 ORTHO05D002405 3.8e-08 63.9 79 39.2
ECA248G3660 Erigeron canadensis HOM05D001944 ORTHO05D002405 3.8e-08 63.9 113 33.6
PSO384G1822 Papaver somniferum HOM05D001944 ORTHO05D002405 3.8e-08 63.9 82 37.8
Solyc11g069610.3 Solanum lycopersicum HOM05D001944 ORTHO05D002405 3.8e-08 63.9 134 36.6
CDE02G3605 Ceratophyllum demersum HOM05D001944 ORTHO05D002405 4.9e-08 63.5 81 39.5
Haze_23780 Corylus avellana HOM05D001944 ORTHO05D002405 4.9e-08 63.5 123 35.0
Glyma.12G175400 Glycine max HOM05D001944 ORTHO05D002405 4.9e-08 63.5 160 31.2
Lsat_1_v5_gn_1_63980 Lactuca sativa HOM05D001944 ORTHO05D002405 6.5e-08 63.2 202 28.2
Glyma.11G196900 Glycine max HOM05D001944 ORTHO05D011318 8.4e-08 62.8 161 29.8
Lj3g0022042 Lotus japonicus HOM05D001944 ORTHO05D011318 8.4e-08 62.8 117 35.9
Migut.N02586 Erythranthe guttata HOM05D001944 ORTHO05D002405 1.4e-07 62.0 170 31.2
Glyma.13G324500 Glycine max HOM05D001944 ORTHO05D002405 1.4e-07 62.0 174 29.3
vmacro07496 Vaccinium macrocarpon HOM05D001944 ORTHO05D017225 1.4e-07 62.0 66 47.0
Lj1g0027821 Lotus japonicus HOM05D001944 ORTHO05D002405 1.9e-07 61.6 152 28.9
Prupe.6G104700 Prunus persica HOM05D001944 ORTHO05D002405 1.9e-07 61.6 148 29.1
Rhsim13G0096400 Rhododendron simsii HOM05D001944 ORTHO05D002405 1.9e-07 61.6 110 39.1
vmacro03215 Vaccinium macrocarpon HOM05D001944 ORTHO05D002405 1.9e-07 61.6 86 44.2
PSO339G2779 Papaver somniferum HOM05D001944 ORTHO05D002405 2.5e-07 61.2 81 38.3
Phvul.005G133500 Phaseolus vulgaris HOM05D001944 ORTHO05D002405 2.5e-07 61.2 95 35.8
AUR62022774 Chenopodium quinoa HOM05D001944 ORTHO05D002405 3.2e-07 60.8 171 30.4
AUR62029226 Chenopodium quinoa HOM05D001944 ORTHO05D002405 5.5e-07 60.1 182 28.6
AUR62029227 Chenopodium quinoa HOM05D001944 ORTHO05D002405 9.3e-07 59.3 190 27.9
Medtr4g058650 Medicago truncatula HOM05D001944 ORTHO05D011318 9.3e-07 59.3 192 28.1
PSO017G6475 Papaver somniferum HOM05D001944 ORTHO05D002405 9.3e-07 59.3 80 38.8
CAN.G631.45 Capsicum annuum HOM05D000550 ORTHO05D009781 1.2e-06 58.9 155 32.9
Rhsim01G0215200 Rhododendron simsii HOM05D001944 ORTHO05D014293 1.6e-06 58.5 206 31.6
Ca_08849_v3 Cicer arietinum L. HOM05D001944 ORTHO05D002405 2.7e-06 57.8 84 41.7
Actinidia40021 Actinidia chinensis HOM05D001944 ORTHO05D017225 3.5e-06 57.4 47 61.7
Lalb_Chr25g0289071 Lupinus albus HOM05D001944 ORTHO05D002405 4.6e-06 57.0 160 30.0
arahy.Tifrunner.gnm1.ann1.BHY38Y Arachis hypogaea HOM05D001944 ORTHO05D002405 7.9e-06 56.2 166 30.7
Sed0004333 Sechium edule HOM05D001944 ORTHO05D002405 7.9e-06 56.2 62 46.8


User provided reference genes

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