Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009801 Camellia sinensis var. sinensis HOM05D008015 ORTHO05D009180 7.7e-103 377.1 184 100.0
CSS0018355 Camellia sinensis var. sinensis HOM05D008015 ORTHO05D009180 2.9e-102 375.2 184 99.5
Actinidia35723 Actinidia chinensis HOM05D008015 ORTHO05D009180 1.9e-32 143.3 171 50.3
TAR371G1005 Trochodendron aralioides HOM05D008015 ORTHO05D009180 1.3e-30 137.1 159 55.3
Actinidia28799 Actinidia chinensis HOM05D008015 ORTHO05D009180 5.1e-30 135.2 171 48.5
Nn4g24386 Nelumbo nucifera HOM05D008015 ORTHO05D009180 9.7e-29 131.0 165 50.3
Oeu032314.1 Olea europaea HOM05D008015 ORTHO05D009180 1.8e-27 126.7 169 46.7
Cc07_g13270 Coffea canephora HOM05D008015 ORTHO05D009180 3.4e-26 122.5 185 45.4
TAR629G2519 Trochodendron aralioides HOM05D008015 ORTHO05D009180 3.4e-26 122.5 169 47.3
Potri.004G085100 Populus trichocarpa HOM05D008015 ORTHO05D009180 2.9e-25 119.4 162 46.9
QL02p059324 Quercus lobata HOM05D008015 ORTHO05D009180 5.5e-24 115.2 172 43.0
MSTRG.3702 Avicennia marina HOM05D008015 ORTHO05D009180 9.4e-24 114.4 170 43.5
Cfa007792 Carpinus fangiana HOM05D008015 ORTHO05D009180 6.1e-23 111.7 172 43.0
Actinidia17202 Actinidia chinensis HOM05D008015 ORTHO05D009180 2.3e-22 109.8 187 40.1
MBI13_g45895_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 2.3e-22 109.8 168 42.3
Rhsim10G0178500 Rhododendron simsii HOM05D008015 ORTHO05D009180 2.3e-22 109.8 192 41.7
Ciclev10012847m.g Citrus clementina HOM05D008015 ORTHO05D009180 1.1e-21 107.5 179 42.5
CiPaw.03G073500 Carya illinoinensis HOM05D008015 ORTHO05D009180 3.3e-21 105.9 174 41.4
DCAR_014163 Daucus carota HOM05D008015 ORTHO05D009180 3.3e-21 105.9 163 42.3
Lalb_Chr18g0053531 Lupinus albus HOM05D008015 ORTHO05D009180 5.7e-21 105.1 168 43.5
Potri.017G131300 Populus trichocarpa HOM05D008015 ORTHO05D009180 7.4e-21 104.8 163 41.1
Lalb_Chr15g0084981 Lupinus albus HOM05D008015 ORTHO05D009180 1.3e-20 104.0 159 45.3
MBI19_g08383_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 1.3e-20 104.0 165 41.2
MBI13_g14024_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 2.2e-20 103.2 164 39.6
SalBow5G5173 Salvia bowleyana HOM05D008015 ORTHO05D009180 2.8e-20 102.8 161 42.9
Cpa.g.sc340.4 Carica papaya HOM05D008015 ORTHO05D009180 1.4e-19 100.5 174 44.8
Duzib268G1603 Durio zibethinus HOM05D008015 ORTHO05D009180 5.3e-19 98.6 163 43.6
LjContig00141g0001505 Lotus japonicus HOM05D008015 ORTHO05D009180 5.3e-19 98.6 171 38.0
VMungo0647G1978 Vigna mungo HOM05D008015 ORTHO05D009180 6.9e-19 98.2 157 40.8
Eucgr.F02874 Eucalyptus grandis HOM05D008015 ORTHO05D009180 1.5e-18 97.1 178 38.8
Medtr3g065210 Medicago truncatula HOM05D008015 ORTHO05D009180 3.4e-18 95.9 167 40.1
TPR.G30001 Trifolium pratense HOM05D008015 ORTHO05D009180 1.0e-17 94.4 176 36.4
TWI77G0273 Tripterygium wilfordii HOM05D008015 ORTHO05D009180 1.7e-17 93.6 154 40.9
Thecc.04G053900 Theobroma cacao HOM05D008015 ORTHO05D009180 2.9e-17 92.8 159 40.9
Glyma.14G213100 Glycine max HOM05D008015 ORTHO05D009180 8.5e-17 91.3 162 38.9
MELO3C022825.2 Cucumis melo HOM05D008015 ORTHO05D009180 1.1e-16 90.9 181 36.5
Manes.02G078100 Manihot esculenta HOM05D008015 ORTHO05D009180 1.4e-16 90.5 157 41.4
ClCG03G008850 Citrullus lanatus HOM05D008015 ORTHO05D009180 3.2e-16 89.4 182 37.4
Nn3g18370 Nelumbo nucifera HOM05D008015 ORTHO05D009180 5.5e-16 88.6 172 40.7
Lsat_1_v5_gn_8_114880 Lactuca sativa HOM05D008015 ORTHO05D009180 9.4e-16 87.8 175 39.4
Sabra17G0109400 Salix brachista HOM05D008015 ORTHO05D009180 9.4e-16 87.8 169 39.1
RcHm_v2.0_Chr3g0491241 Rosa chinensis HOM05D008015 ORTHO05D009180 1.6e-15 87.0 204 33.8
SGA_v2.0_scaffold45G17152 Striga asiatica HOM05D008015 ORTHO05D009180 2.1e-15 86.7 167 38.3
TWI74G1025 Tripterygium wilfordii HOM05D008015 ORTHO05D009180 2.1e-15 86.7 156 41.0
CDE05G1037 Ceratophyllum demersum HOM05D008015 ORTHO05D009180 3.6e-15 85.9 166 36.7
Aqoxy1G02179 Aquilegia oxysepala HOM05D008015 ORTHO05D009180 1.0e-14 84.3 174 41.4
Glyma.18G041300 Glycine max HOM05D008015 ORTHO05D009180 3.9e-14 82.4 141 41.1
Lalb_Chr17g0346041 Lupinus albus HOM05D008015 ORTHO05D009180 8.8e-14 81.3 170 37.6
Dinv28182 Davidia involucrata HOM05D008015 ORTHO05D009180 1.1e-13 80.9 164 37.8
CsaV3_5G023910 Cucumis sativus L. HOM05D009275 ORTHO05D009180 2.0e-13 80.1 161 36.6
CDE05G0668 Ceratophyllum demersum HOM05D006178 ORTHO05D007504 2.6e-13 79.7 157 35.7
Medtr5g077940 Medicago truncatula HOM05D008015 ORTHO05D009180 2.6e-13 79.7 163 35.0
Sed0025761 Sechium edule HOM05D008015 ORTHO05D009180 2.6e-13 79.7 165 35.8
Prupe.3G166400 Prunus persica HOM05D008015 ORTHO05D009180 3.3e-13 79.3 117 50.4
PSO478G3758 Papaver somniferum HOM05D008015 ORTHO05D009180 1.3e-12 77.4 171 37.4
CANSAT35G1526 Cannabis sativa HOM05D008015 ORTHO05D009180 1.7e-12 77.0 174 36.8
MD09G1270500 Malus domestica HOM05D008015 ORTHO05D009180 2.8e-12 76.3 202 35.6
Phvul.001G229400 Phaseolus vulgaris HOM05D008015 ORTHO05D009180 2.8e-12 76.3 122 42.6
MBI13_g24899_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 3.7e-12 75.9 79 49.4
Gohir.D07G078200 Gossypium hirsutum HOM05D008015 ORTHO05D009180 8.2e-12 74.7 161 36.6
Gorai.001G082600 Gossypium raimondii HOM05D008015 ORTHO05D009180 8.2e-12 74.7 161 36.6
Gohir.A07G073500 Gossypium hirsutum HOM05D008015 ORTHO05D009180 1.8e-11 73.6 161 35.4
ATR0753G067 Amborella trichopoda HOM05D008015 ORTHO05D009180 9.1e-11 71.2 164 29.9
Lj2P519T18 Lonicera japonica HOM05D008015 ORTHO05D009180 1.6e-10 70.5 128 43.0
VMungo1383G2632 Vigna mungo HOM05D008015 ORTHO05D009180 2.0e-10 70.1 137 35.8
FvH4_1g30203 Fragaria vesca HOM05D008015 ORTHO05D009180 3.5e-10 69.3 108 39.8
Migut.K00921 Erythranthe guttata HOM05D008015 ORTHO05D009180 5.9e-10 68.6 166 34.9
FAN26G1918 Fragaria x ananassa HOM05D008015 ORTHO05D009180 7.7e-10 68.2 174 32.8
FAN23G1273 Fragaria x ananassa HOM05D008015 ORTHO05D009180 1.0e-09 67.8 174 33.3
Phvul.008G237600 Phaseolus vulgaris HOM05D008015 ORTHO05D009180 1.3e-09 67.4 146 34.2
Psat2g045760 Pisum sativum HOM05D008015 ORTHO05D009180 2.9e-09 66.2 161 33.5
Sp7g04570 Schrenkiella parvula HOM05D009275 ORTHO05D009180 3.8e-09 65.9 171 36.3
arahy.Tifrunner.gnm1.ann1.NRE7W4 Arachis hypogaea HOM05D009275 ORTHO05D009180 1.5e-08 63.9 168 33.3
BcaB06g27100 Brassica carinata HOM05D009275 ORTHO05D009180 1.5e-08 63.9 163 35.0
BraA02t06410Z Brassica rapa HOM05D009275 ORTHO05D009180 1.5e-08 63.9 181 33.1
AL7G46310 Arabidopsis lyrata HOM05D009275 ORTHO05D009180 3.2e-08 62.8 167 37.7
A02p13520 Brassica napus HOM05D009275 ORTHO05D009180 4.2e-08 62.4 181 32.0
CARHR215350 Cardamine hirsuta HOM05D009275 ORTHO05D009180 4.2e-08 62.4 158 38.6
CARHR292200 Cardamine hirsuta HOM05D009275 ORTHO05D009180 4.2e-08 62.4 121 38.8
BraA04t16736Z Brassica rapa HOM05D009275 ORTHO05D009180 5.5e-08 62.0 163 35.6
Thhalv10019019m.g Eutrema salsugineum HOM05D009275 ORTHO05D009180 5.5e-08 62.0 114 40.4
Glyma.11G215300 Glycine max HOM05D008015 ORTHO05D009180 5.5e-08 62.0 105 39.0
Lsat_1_v5_gn_3_63900 Lactuca sativa HOM05D008015 ORTHO05D009180 5.5e-08 62.0 177 32.2
PGR004G2766 Punica granatum HOM05D009275 ORTHO05D009180 5.5e-08 62.0 191 29.3
Aa31LG9G17500 Aethionema arabicum HOM05D009275 ORTHO05D009180 7.2e-08 61.6 168 35.7
BcaC02g09585 Brassica carinata HOM05D009275 ORTHO05D009180 9.4e-08 61.2 163 35.0
C04p44430 Brassica napus HOM05D009275 ORTHO05D009180 9.4e-08 61.2 163 35.0
BolC4t26014H Brassica oleracea HOM05D009275 ORTHO05D009180 9.4e-08 61.2 163 35.0
A04p10720 Brassica napus HOM05D009275 ORTHO05D009180 1.2e-07 60.8 163 35.6
AT5G37550 Arabidopsis thaliana HOM05D009275 ORTHO05D009180 2.7e-07 59.7 95 46.3
arahy.Tifrunner.gnm1.ann1.I66ZQ3 Arachis hypogaea HOM05D009275 ORTHO05D009180 2.7e-07 59.7 168 32.1
BcaB05g24157 Brassica carinata HOM05D009275 ORTHO05D009180 2.7e-07 59.7 100 43.0
Thhalv10027910m.g Eutrema salsugineum HOM05D009275 ORTHO05D009180 2.7e-07 59.7 173 37.0
Sp5g21250 Schrenkiella parvula HOM05D009275 ORTHO05D009180 2.7e-07 59.7 161 34.8
Carub.0007s3272 Capsella rubella HOM05D009275 ORTHO05D009180 3.6e-07 59.3 97 46.4
COL.COLO4_13422 Corchorus olitorius HOM05D009275 ORTHO05D009180 4.7e-07 58.9 114 38.6
Aa31LG2G2900 Aethionema arabicum HOM05D009275 ORTHO05D009180 8.0e-07 58.2 100 43.0
BcaC03g14735 Brassica carinata HOM05D009275 ORTHO05D009180 1.4e-06 57.4 99 42.4
Carub.0002s1218 Capsella rubella HOM05D009275 ORTHO05D009180 3.0e-06 56.2 101 40.6
MBI13_g29561_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 3.0e-06 56.2 99 34.3
C02p21840 Brassica napus HOM05D009275 ORTHO05D009180 6.7e-06 55.1 155 32.9
BolC2t08316H Brassica oleracea HOM05D009275 ORTHO05D009180 6.7e-06 55.1 155 32.9
AL2G23880 Arabidopsis lyrata HOM05D009275 ORTHO05D009180 8.8e-06 54.7 151 33.8


User provided reference genes

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