Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009789 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 7.0e-110 400.6 198 100.0
CSS0004262 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 3.3e-35 152.5 97 79.4
CSS0028083 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 1.2e-32 144.1 97 76.3
Dinv25223 Davidia involucrata HOM05D004742 ORTHO05D005677 2.8e-18 96.3 94 58.5
Actinidia03372 Actinidia chinensis HOM05D004742 ORTHO05D005677 4.8e-18 95.5 116 52.6
Actinidia25968 Actinidia chinensis HOM05D004742 ORTHO05D005677 1.5e-14 84.0 121 45.5
CANSAT21G2184 Cannabis sativa HOM05D004742 ORTHO05D005677 1.8e-12 77.0 109 45.9
Actinidia14802 Actinidia chinensis HOM05D004742 ORTHO05D005677 4.9e-10 68.9 106 47.2
Gorai.013G095300 Gossypium raimondii HOM05D000634 ORTHO05D000517 8.3e-10 68.2 30 93.3
Cfa008861 Carpinus fangiana HOM05D000634 ORTHO05D000517 4.1e-09 65.9 122 39.3
Sc11g0002550 Simmondsia chinensis HOM05D000634 ORTHO05D000517 4.1e-09 65.9 45 71.1
Gohir.D13G083500 Gossypium hirsutum HOM05D000634 ORTHO05D000517 7.0e-09 65.1 45 68.9
MD13G1059800 Malus domestica HOM05D000634 ORTHO05D000517 7.0e-09 65.1 45 71.1
MD16G1059300 Malus domestica HOM05D000634 ORTHO05D000517 7.0e-09 65.1 45 71.1
FAN07G0390 Fragaria x ananassa HOM05D000634 ORTHO05D007695 1.6e-08 63.9 45 66.7
Gohir.A13G084232 Gossypium hirsutum HOM05D000634 ORTHO05D000517 1.6e-08 63.9 45 66.7
Gohir.D02G130600 Gossypium hirsutum HOM05D000634 ORTHO05D000517 1.6e-08 63.9 121 38.0
Actinidia16151 Actinidia chinensis HOM05D000634 ORTHO05D000517 2.0e-08 63.5 29 93.1
RcHm_v2.0_Chr4g0437951 Rosa chinensis HOM05D000634 ORTHO05D000517 2.0e-08 63.5 117 37.6
Gorai.005G146500 Gossypium raimondii HOM05D000634 ORTHO05D000517 2.7e-08 63.2 121 38.0
Gohir.A03G105300 Gossypium hirsutum HOM05D000634 ORTHO05D000517 3.5e-08 62.8 121 38.0
Hma1.2p1_0303F.1_g119030 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 3.5e-08 62.8 110 40.0
CAN.G707.22 Capsicum annuum HOM05D000634 ORTHO05D000517 4.5e-08 62.4 120 37.5
Dinv34050 Davidia involucrata HOM05D000634 ORTHO05D000517 4.5e-08 62.4 45 64.4
QL03p073739 Quercus lobata HOM05D000634 ORTHO05D000517 4.5e-08 62.4 121 37.2
Rhsim07G0128300 Rhododendron simsii HOM05D004742 ORTHO05D005677 4.5e-08 62.4 108 42.6
TAR375G0192 Trochodendron aralioides HOM05D004742 ORTHO05D005677 5.9e-08 62.0 94 43.6
CiPaw.05G123700 Carya illinoinensis HOM05D000634 ORTHO05D000517 7.7e-08 61.6 122 36.9
Lj8P301T9 Lonicera japonica HOM05D004742 ORTHO05D005677 7.7e-08 61.6 102 41.2
Nitab4.5_0000231g0040 Nicotiana tabacum HOM05D000634 ORTHO05D000517 7.7e-08 61.6 122 37.7
AUR62007896 Chenopodium quinoa HOM05D000634 ORTHO05D000517 1.0e-07 61.2 45 64.4
Dinv20150 Davidia involucrata HOM05D000634 ORTHO05D000517 1.0e-07 61.2 45 64.4
FAN22G1444 Fragaria x ananassa HOM05D006251 ORTHO05D007695 1.0e-07 61.2 120 37.5
Lj6A777T41 Lonicera japonica HOM05D000634 ORTHO05D000517 1.0e-07 61.2 45 66.7
Manes.01G026500 Manihot esculenta HOM05D000634 ORTHO05D000517 1.0e-07 61.2 45 64.4
FvH4_4g29701 Fragaria vesca HOM05D000634 ORTHO05D000517 1.3e-07 60.8 120 37.5
FAN12G1640 Fragaria x ananassa HOM05D006251 ORTHO05D007695 1.3e-07 60.8 120 37.5
FAN17G1351 Fragaria x ananassa HOM05D006251 ORTHO05D007695 1.3e-07 60.8 120 37.5
Lsat_1_v5_gn_3_18001 Lactuca sativa HOM05D004742 ORTHO05D005677 1.7e-07 60.5 98 40.8
Solyc05g012080.3 Solanum lycopersicum HOM05D000634 ORTHO05D000517 2.3e-07 60.1 124 36.3
Sopen05g006870 Solanum pennellii HOM05D000634 ORTHO05D000517 2.3e-07 60.1 124 36.3
Thecc.02G327200 Theobroma cacao HOM05D000634 ORTHO05D000517 2.9e-07 59.7 121 36.4
Aqoxy3G01563 Aquilegia oxysepala HOM05D000634 ORTHO05D000517 3.8e-07 59.3 45 57.8
Cpa.g.sc1.152 Carica papaya HOM05D000634 ORTHO05D000517 3.8e-07 59.3 94 43.6
AUR62003079 Chenopodium quinoa HOM05D000634 ORTHO05D000517 3.8e-07 59.3 80 45.0
Migut.E00045 Erythranthe guttata HOM05D000634 ORTHO05D000517 3.8e-07 59.3 45 64.4
Sabra10G0119200 Salix brachista HOM05D000634 ORTHO05D000517 3.8e-07 59.3 47 63.8
Hund25164 Selenicereus undatus HOM05D003773 ORTHO05D004377 3.8e-07 59.3 45 62.2
SGA_v2.0_scaffold59G20669 Striga asiatica HOM05D000634 ORTHO05D000517 3.8e-07 59.3 45 60.0
Hma1.2p1_0574F.1_g181490 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 5.0e-07 58.9 93 43.0
Rhsim09G0125900 Rhododendron simsii HOM05D000634 ORTHO05D007695 5.0e-07 58.9 45 64.4
TPR.G1023 Trifolium pratense HOM05D004742 ORTHO05D005677 5.0e-07 58.9 99 39.4
HPP92_000892 Vanilla planifolia HOM05D000634 ORTHO05D000517 5.0e-07 58.9 45 62.2
Nitab4.5_0007734g0010 Nicotiana tabacum HOM05D000634 ORTHO05D000517 6.6e-07 58.5 122 36.1
PGSC0003DMG400028310 Solanum tuberosum HOM05D000634 ORTHO05D000517 8.6e-07 58.2 124 35.5
TWI75G0732 Tripterygium wilfordii HOM05D000634 ORTHO05D000517 8.6e-07 58.2 45 60.0
vmacro20924 Vaccinium macrocarpon HOM05D000634 ORTHO05D000517 8.6e-07 58.2 45 62.2
ECA233G2971 Erigeron canadensis HOM05D000634 ORTHO05D000517 1.1e-06 57.8 45 57.8
TWI79G1333 Tripterygium wilfordii HOM05D000634 ORTHO05D000517 1.1e-06 57.8 45 60.0
GSVIVG01012239001 Vitis vinifera HOM05D000634 ORTHO05D000517 1.1e-06 57.8 45 62.2
Ah.02g126800 Amaranthus hybridus HOM05D000634 ORTHO05D000517 1.5e-06 57.4 45 60.0
CDE10G0343 Ceratophyllum demersum HOM05D000634 ORTHO05D000517 1.5e-06 57.4 45 57.8
Ca_06086_v3 Cicer arietinum L. HOM05D004742 ORTHO05D005677 1.5e-06 57.4 99 39.4
Eucgr.B03141 Eucalyptus grandis HOM05D000634 ORTHO05D000517 1.5e-06 57.4 45 55.6
Lsat_1_v5_gn_8_45940 Lactuca sativa HOM05D000634 ORTHO05D000517 1.5e-06 57.4 29 82.8
Lj2g0012271 Lotus japonicus HOM05D000634 ORTHO05D000517 1.5e-06 57.4 45 57.8
Sabra08G0073700 Salix brachista HOM05D000634 ORTHO05D000517 1.5e-06 57.4 38 63.2
vmacro10438 Vaccinium macrocarpon HOM05D000634 ORTHO05D000517 1.5e-06 57.4 29 82.8
Zm00001eb214730 Zea mays HOM05D000634 ORTHO05D000517 1.5e-06 57.4 29 79.3
PSO017G4328 Papaver somniferum HOM05D000634 ORTHO05D000517 1.9e-06 57.0 45 55.6
PSO478G4330 Papaver somniferum HOM05D000634 ORTHO05D000517 1.9e-06 57.0 45 55.6
Hund05828 Selenicereus undatus HOM05D000634 ORTHO05D000517 1.9e-06 57.0 45 57.8
MSTRG.2301 Avicennia marina HOM05D000634 ORTHO05D000517 2.5e-06 56.6 45 60.0
EL10Ac6g15020 Beta vulgaris HOM05D000634 ORTHO05D000517 2.5e-06 56.6 29 75.9
CDE10G1337 Ceratophyllum demersum HOM05D000634 ORTHO05D000517 2.5e-06 56.6 45 57.8
Ciclev10033049m.g Citrus clementina HOM05D000634 ORTHO05D000517 2.5e-06 56.6 45 57.8
Potri.010G156900 Populus trichocarpa HOM05D000634 ORTHO05D000517 2.5e-06 56.6 80 45.0
unitig_0.g1071 Utricularia gibba HOM05D000634 ORTHO05D000517 2.5e-06 56.6 29 79.3
CANSAT64G0085 Cannabis sativa HOM05D000634 ORTHO05D000517 3.3e-06 56.2 45 60.0
PGR102G1858 Punica granatum HOM05D000634 ORTHO05D000517 3.3e-06 56.2 124 31.5
Zm00001eb057570 Zea mays HOM05D000634 ORTHO05D000517 3.3e-06 56.2 29 75.9
AT1G26340 Arabidopsis thaliana HOM05D000634 ORTHO05D000517 4.3e-06 55.8 45 57.8
Carub.0001s2466 Capsella rubella HOM05D000634 ORTHO05D000517 4.3e-06 55.8 29 79.3
PGSC0003DMG400017538 Solanum tuberosum HOM05D004742 ORTHO05D005677 4.3e-06 55.8 101 39.6
TAR374G0395 Trochodendron aralioides HOM05D004742 ORTHO05D005677 4.3e-06 55.8 105 39.0
Aa31LG7G8710 Aethionema arabicum HOM05D000634 ORTHO05D000517 5.6e-06 55.5 94 41.5
arahy.Tifrunner.gnm1.ann1.I71KET Arachis hypogaea HOM05D000634 ORTHO05D000517 5.6e-06 55.5 114 31.6
Aa31LG2G20570 Aethionema arabicum HOM05D000634 ORTHO05D000517 7.3e-06 55.1 131 31.3
Thhalv10009081m.g Eutrema salsugineum HOM05D000634 ORTHO05D000517 7.3e-06 55.1 94 40.4
HanXRQChr08g0212521 Helianthus annuus HOM05D000634 ORTHO05D000517 7.3e-06 55.1 29 72.4
HanXRQChr17g0536221 Helianthus annuus HOM05D004742 ORTHO05D005677 7.3e-06 55.1 92 39.1
Nn3g17501 Nelumbo nucifera HOM05D000634 ORTHO05D000517 7.3e-06 55.1 29 72.4
Prupe.1G289700 Prunus persica HOM05D000634 ORTHO05D000517 7.3e-06 55.1 45 60.0
Lalb_Chr04g0255541 Lupinus albus HOM05D000634 ORTHO05D000517 9.5e-06 54.7 45 57.8
Nitab4.5_0010403g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 9.5e-06 54.7 112 38.4
QL12p005003 Quercus lobata HOM05D004742 ORTHO05D005677 9.5e-06 54.7 107 38.3
Sopen08g025400 Solanum pennellii HOM05D004742 ORTHO05D005677 9.5e-06 54.7 101 39.6
THA.LOC104808516 Tarenaya hassleriana HOM05D000634 ORTHO05D000517 9.5e-06 54.7 29 75.9


User provided reference genes

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