Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009782 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 1.1e-294 1016.1 639 100.0
CSS0010936 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 5.5e-289 997.3 641 97.7
Nitab4.5_0000246g0070 Nicotiana tabacum HOM05D004118 ORTHO05D004686 4.1e-127 459.5 685 48.2
Nitab4.5_0011677g0020 Nicotiana tabacum HOM05D004118 ORTHO05D004686 1.6e-126 457.6 682 48.1
Dinv14950 Davidia involucrata HOM05D004118 ORTHO05D004686 3.1e-122 443.4 620 57.3
Solyc07g062730.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 2.0e-121 440.7 668 45.7
Sopen07g030960 Solanum pennellii HOM05D004118 ORTHO05D004686 4.4e-121 439.5 665 47.2
PGSC0003DMG400012399 Solanum tuberosum HOM05D004118 ORTHO05D004686 4.4e-121 439.5 677 49.8
Manes.15G090200 Manihot esculenta HOM05D004118 ORTHO05D004686 3.7e-120 436.4 687 45.9
QL08p023555 Quercus lobata HOM05D004118 ORTHO05D004686 8.3e-120 435.3 698 48.4
Cfa020624 Carpinus fangiana HOM05D004118 ORTHO05D004686 3.2e-119 433.3 673 53.0
TAR627G0391 Trochodendron aralioides HOM05D004118 ORTHO05D004686 1.7e-117 427.6 661 51.7
Sabra11G0090500 Salix brachista HOM05D004118 ORTHO05D004686 3.0e-117 426.8 703 46.4
CAN.G162.27 Capsicum annuum HOM05D004118 ORTHO05D004686 3.9e-117 426.4 666 45.9
Sabra11G0091500 Salix brachista HOM05D004118 ORTHO05D004686 8.6e-117 425.2 707 46.4
Actinidia35234 Actinidia chinensis HOM05D004118 ORTHO05D001556 1.9e-116 424.1 661 49.0
CiPaw.11G166400 Carya illinoinensis HOM05D004118 ORTHO05D004686 1.9e-116 424.1 691 47.0
Haze_09381 Corylus avellana HOM05D004118 ORTHO05D004686 1.2e-115 421.4 665 50.1
MD03G1236100 Malus domestica HOM05D004118 ORTHO05D004686 4.0e-114 416.4 695 46.3
Manes.03G104700 Manihot esculenta HOM05D004118 ORTHO05D004686 2.0e-113 414.1 710 43.8
SalBow8G5405 Salvia bowleyana HOM05D004118 ORTHO05D004686 3.4e-113 413.3 654 54.0
Potri.011G097700 Populus trichocarpa HOM05D004118 ORTHO05D004686 4.4e-113 412.9 708 43.2
Prupe.4G173200 Prunus persica HOM05D004118 ORTHO05D004686 5.8e-113 412.5 701 43.8
MSTRG.6813 Avicennia marina HOM05D004118 ORTHO05D004686 1.3e-112 411.4 689 43.8
Potri.001G373100 Populus trichocarpa HOM05D004118 ORTHO05D004686 2.9e-112 410.2 706 46.2
MD11G1256900 Malus domestica HOM05D004118 ORTHO05D004686 1.1e-108 398.3 682 49.4
Thecc.07G100000 Theobroma cacao HOM05D004118 ORTHO05D004686 3.6e-107 393.3 704 46.3
Cpa.g.sc80.12 Carica papaya HOM05D004118 ORTHO05D004686 2.3e-106 390.6 717 45.2
Actinidia07500 Actinidia chinensis HOM05D004118 ORTHO05D004686 8.9e-106 388.7 641 54.8
TWI39G0897 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 2.9e-104 383.6 706 43.8
Sc16g0007320 Simmondsia chinensis HOM05D004118 ORTHO05D004686 8.4e-104 382.1 703 42.4
CiPaw.12G116800 Carya illinoinensis HOM05D004118 ORTHO05D004686 5.4e-103 379.4 694 42.7
PGR083G2344 Punica granatum HOM05D004118 ORTHO05D004686 5.4e-103 379.4 665 45.0
Eucgr.F01179 Eucalyptus grandis HOM05D004118 ORTHO05D004686 9.2e-103 378.6 712 44.0
Sabra16G0245500 Salix brachista HOM05D004118 ORTHO05D004686 2.1e-102 377.5 685 45.4
Cc05_g11580 Coffea canephora HOM05D004118 ORTHO05D004686 1.0e-101 375.2 781 42.6
FvH4_3g19150 Fragaria vesca HOM05D004118 ORTHO05D004686 3.9e-101 373.2 696 43.1
FAN25G0990 Fragaria x ananassa HOM05D004118 ORTHO05D004686 3.9e-101 373.2 687 44.4
RcHm_v2.0_Chr5g0032241 Rosa chinensis HOM05D004118 ORTHO05D004686 2.5e-100 370.5 695 50.5
MSTRG.15246 Avicennia marina HOM05D004118 ORTHO05D004686 3.3e-100 370.2 660 43.8
Duzib213G0890 Durio zibethinus HOM05D004118 ORTHO05D004686 4.7e-99 366.3 682 43.3
FAN11G3070 Fragaria x ananassa HOM05D004118 ORTHO05D004686 4.7e-99 366.3 695 43.0
vmacro11898 Vaccinium macrocarpon HOM05D004118 ORTHO05D004686 1.4e-98 364.8 676 48.2
CSS0030924 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 3.1e-98 363.6 648 46.5
Nn1g04275 Nelumbo nucifera HOM05D004118 ORTHO05D004686 9.0e-98 362.1 718 40.5
Medtr2g078530 Medicago truncatula HOM05D004118 ORTHO05D004686 2.0e-97 360.9 689 45.4
DCAR_021002 Daucus carota HOM05D004118 ORTHO05D004686 5.8e-97 359.4 723 40.0
Rhsim04G0023200 Rhododendron simsii HOM05D004118 ORTHO05D004686 9.9e-97 358.6 710 44.1
Dinv20215 Davidia involucrata HOM05D004118 ORTHO05D004686 8.4e-96 355.5 660 47.7
FAN16G2866 Fragaria x ananassa HOM05D004118 ORTHO05D004686 8.4e-96 355.5 696 43.4
Gohir.D01G046700 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.4e-95 354.8 674 49.1
Gohir.D13G152264 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.4e-95 354.8 681 48.2
TWI38G2280 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 1.4e-95 354.8 672 41.2
FAN21G0508 Fragaria x ananassa HOM05D004118 ORTHO05D004686 3.2e-95 353.6 690 40.9
MSTRG.12889 Avicennia marina HOM05D004118 ORTHO05D004686 7.1e-95 352.4 683 42.8
Peaxi162Scf00069g00197 Petunia axillaris HOM05D004118 ORTHO05D004686 1.2e-94 351.7 666 44.6
Rhsim06G0203400 Rhododendron simsii HOM05D004118 ORTHO05D004686 2.1e-94 350.9 690 46.7
Lj8C153G19 Lonicera japonica HOM05D004118 ORTHO05D004686 1.3e-93 348.2 641 42.0
VMungo1080G0043 Vigna mungo HOM05D004118 ORTHO05D004686 1.3e-93 348.2 700 42.6
PGSC0003DMG400015371 Solanum tuberosum HOM05D004118 ORTHO05D004686 2.3e-93 347.4 673 40.6
Gohir.A13G147400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 8.7e-93 345.5 691 48.0
Peaxi162Scf00000g00285 Petunia axillaris HOM05D004118 ORTHO05D004686 8.7e-93 345.5 652 42.0
Nitab4.5_0003033g0050 Nicotiana tabacum HOM05D004118 ORTHO05D004686 1.1e-92 345.1 659 48.1
SGA_v2.0_scaffold73G24222 Striga asiatica HOM05D004118 ORTHO05D004686 1.1e-92 345.1 711 38.7
Gorai.013G171900 Gossypium raimondii HOM05D004118 ORTHO05D004686 9.6e-92 342.0 678 49.3
Lsat_1_v5_gn_9_98421 Lactuca sativa HOM05D004118 ORTHO05D004686 1.6e-91 341.3 692 41.2
Nitab4.5_0000332g0190 Nicotiana tabacum HOM05D004118 ORTHO05D004686 1.6e-91 341.3 646 43.5
Oeu019296.1 Olea europaea HOM05D004118 ORTHO05D004686 1.8e-90 337.8 685 46.9
Aqoxy1G02262 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 2.4e-90 337.4 678 42.5
CsaV3_3G019580 Cucumis sativus L. HOM05D004118 ORTHO05D004686 5.3e-90 336.3 731 46.4
Ciclev10007570m.g Citrus clementina HOM05D004118 ORTHO05D004686 2.0e-89 334.3 701 43.9
HanXRQChr03g0070941 Helianthus annuus HOM05D004118 ORTHO05D004686 2.2e-88 330.9 676 37.6
Migut.M00768 Erythranthe guttata HOM05D004118 ORTHO05D004686 8.4e-88 328.9 706 41.4
Phvul.005G069300 Phaseolus vulgaris HOM05D004118 ORTHO05D004686 1.4e-87 328.2 678 44.5
Psat5g241400 Pisum sativum HOM05D004118 ORTHO05D004686 9.3e-87 325.5 704 41.1
Sopen12g005780 Solanum pennellii HOM05D004118 ORTHO05D004686 1.0e-85 322.0 667 39.4
Glyma.13G273000 Glycine max HOM05D004118 ORTHO05D004686 5.6e-84 316.2 692 40.8
MELO3C019394.2 Cucumis melo HOM05D004118 ORTHO05D004686 4.8e-83 313.2 720 40.6
PSO675G0887 Papaver somniferum HOM05D004118 ORTHO05D004686 2.0e-81 307.8 706 38.5
Lalb_Chr20g0109451 Lupinus albus HOM05D004118 ORTHO05D004686 3.4e-81 307.0 696 39.8
Sed0017211 Sechium edule HOM05D004118 ORTHO05D004686 1.3e-80 305.1 688 42.2
Oeu025351.1 Olea europaea HOM05D004118 ORTHO05D004686 2.2e-80 304.3 655 41.7
Lsat_1_v5_gn_7_103661 Lactuca sativa HOM05D004118 ORTHO05D004686 3.8e-80 303.5 653 42.0
CANSAT35G0858 Cannabis sativa HOM05D004118 ORTHO05D004686 4.9e-80 303.1 682 45.7
ECA236G3195 Erigeron canadensis HOM05D004118 ORTHO05D004686 4.9e-80 303.1 705 36.6
Glyma.12G227300 Glycine max HOM05D004118 ORTHO05D004686 1.4e-79 301.6 689 45.3
Duzib170G0047 Durio zibethinus HOM05D004118 ORTHO05D004686 1.0e-77 295.4 670 40.3
Lsat_1_v5_gn_5_128820 Lactuca sativa HOM05D004118 ORTHO05D004686 3.9e-77 293.5 680 39.4
Sp3g13300 Schrenkiella parvula HOM05D004118 ORTHO05D004686 6.7e-77 292.7 671 39.2
MBI07_g32544_MAGBIO Magnolia biondii HOM05D004118 ORTHO05D004686 2.5e-76 290.8 707 45.8
Thhalv10020211m.g Eutrema salsugineum HOM05D004118 ORTHO05D004686 6.2e-75 286.2 671 38.2
ECA240G2123 Erigeron canadensis HOM05D004118 ORTHO05D004686 6.9e-74 282.7 706 35.6
Lalb_Chr25g0286181 Lupinus albus HOM05D004118 ORTHO05D004686 4.5e-73 280.0 639 38.5
Gorai.002G066200 Gossypium raimondii HOM05D004118 ORTHO05D004686 1.0e-72 278.9 561 49.4
Hma1.2p1_0313F.1_g121640 Hydrangea macrophylla HOM05D004118 ORTHO05D004686 3.8e-72 276.9 643 42.3
THA.LOC104810455 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 3.8e-72 276.9 676 36.2
Ah.06g194460 Amaranthus hybridus HOM05D004118 ORTHO05D004686 1.4e-71 275.0 689 37.9
Lj3g0023579 Lotus japonicus HOM05D004118 ORTHO05D004686 2.5e-71 274.2 686 43.9
PSO478G3864 Papaver somniferum HOM05D004118 ORTHO05D004686 2.5e-71 274.2 719 36.6
arahy.Tifrunner.gnm1.ann1.YMW7LF Arachis hypogaea HOM05D004118 ORTHO05D004686 2.1e-70 271.2 659 36.4
Sed0016267 Sechium edule HOM05D004118 ORTHO05D004686 1.8e-69 268.1 648 37.0
Aa31LG8G2310 Aethionema arabicum HOM05D004118 ORTHO05D004686 3.0e-69 267.3 668 37.3
PSO017G1325 Papaver somniferum HOM05D004118 ORTHO05D004686 3.0e-69 267.3 742 34.6
TPR.G17554 Trifolium pratense HOM05D004118 ORTHO05D004686 1.1e-68 265.4 685 39.3
PSO541G0755 Papaver somniferum HOM05D004118 ORTHO05D004686 5.7e-68 263.1 703 36.1
HanXRQChr10g0302481 Helianthus annuus HOM05D004118 ORTHO05D004686 7.4e-68 262.7 687 37.3
ECA234G1224 Erigeron canadensis HOM05D004118 ORTHO05D004686 1.2e-65 255.4 685 36.8
EL10Ac4g08266 Beta vulgaris HOM05D004118 ORTHO05D004686 1.5e-65 255.0 699 41.9
unitig_37.g12565 Utricularia gibba HOM05D004118 ORTHO05D004686 1.5e-65 255.0 666 37.2
unitig_747.g21581 Utricularia gibba HOM05D004118 ORTHO05D004686 2.9e-64 250.8 687 34.4
AUR62036141 Chenopodium quinoa HOM05D004118 ORTHO05D004686 1.4e-63 248.4 704 41.9
DCAR_019575 Daucus carota HOM05D004118 ORTHO05D004686 2.5e-63 247.7 673 34.3
Lalb_Chr01g0006651 Lupinus albus HOM05D004118 ORTHO05D004686 2.7e-62 244.2 651 35.6
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 4.8e-59 233.4 674 38.4
Actinidia14383 Actinidia chinensis HOM05D004118 ORTHO05D004686 3.4e-57 227.3 327 57.8
Aqoxy4G00578 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 3.4e-57 227.3 684 38.0
BcaB04g20948 Brassica carinata HOM05D004118 ORTHO05D004686 5.9e-57 226.5 665 33.8
CARHR090060 Cardamine hirsuta HOM05D004118 ORTHO05D004686 5.9e-57 226.5 668 35.2
AL3G27450 Arabidopsis lyrata HOM05D004118 ORTHO05D004686 3.6e-54 217.2 683 34.6
arahy.Tifrunner.gnm1.ann1.82B0EJ Arachis hypogaea HOM05D004118 ORTHO05D004686 6.1e-54 216.5 614 34.2
Lalb_Chr19g0134031 Lupinus albus HOM05D004118 ORTHO05D004686 2.0e-49 201.4 649 33.1
SGA_v2.0_scaffold70G23697 Striga asiatica HOM05D004118 ORTHO05D004686 1.3e-48 198.7 673 32.5
Gohir.A08G021600 Gossypium hirsutum HOM05D004118 ORTHO05D004686 4.7e-46 190.3 633 30.5
Lalb_Chr03g0030811 Lupinus albus HOM05D004118 ORTHO05D004686 4.7e-46 190.3 636 33.2
HanXRQChr15g0494281 Helianthus annuus HOM05D004118 ORTHO05D004686 8.8e-45 186.0 736 33.3
DCAR_017117 Daucus carota HOM05D004118 ORTHO05D004686 5.7e-44 183.3 663 30.0
Gohir.A01G060200 Gossypium hirsutum HOM05D004118 ORTHO05D004686 2.2e-43 181.4 475 46.9
HPP92_002942 Vanilla planifolia HOM05D004118 ORTHO05D004686 1.4e-42 178.7 681 32.0
Ah.04g162010 Amaranthus hybridus HOM05D004118 ORTHO05D004686 4.1e-42 177.2 673 35.4
Gohir.D08G032400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 2.6e-41 174.5 635 29.9
GSVIVG01014262001 Vitis vinifera HOM05D004118 ORTHO05D003395 3.5e-41 174.1 530 32.8
Nn1g06377 Nelumbo nucifera HOM05D004118 ORTHO05D004686 5.9e-41 173.3 207 52.2
HPP92_003871 Vanilla planifolia HOM05D004118 ORTHO05D004686 1.1e-39 169.1 676 30.3
Gorai.004G029800 Gossypium raimondii HOM05D004118 ORTHO05D004686 5.5e-39 166.8 635 29.1
BcaC09g48474 Brassica carinata HOM05D004118 ORTHO05D004686 2.1e-38 164.9 632 32.0
BolC1t04899H Brassica oleracea HOM05D004118 ORTHO05D004686 1.4e-37 162.2 632 31.8
C01p49420 Brassica napus HOM05D004118 ORTHO05D004686 4.0e-37 160.6 632 31.3
HanXRQChr12g0372791 Helianthus annuus HOM05D004118 ORTHO05D004686 2.0e-36 158.3 163 55.2
A05p34340 Brassica napus HOM05D004118 ORTHO05D004686 3.3e-36 157.5 683 31.8
Zm00001eb014970 Zea mays HOM05D004118 ORTHO05D004686 7.5e-36 156.4 803 27.9
CAN.G329.5 Capsicum annuum HOM05D004118 ORTHO05D004686 9.7e-36 156.0 158 55.7
PSO675G3813 Papaver somniferum HOM05D004118 ORTHO05D004686 2.8e-35 154.5 334 38.9
Os06g0352900 Oryza sativa ssp. japonica HOM05D004118 ORTHO05D004686 4.8e-35 153.7 796 28.9
C05p52120 Brassica napus HOM05D004118 ORTHO05D004686 4.1e-34 150.6 678 31.0
BolC5t33897H Brassica oleracea HOM05D004118 ORTHO05D004686 4.1e-34 150.6 678 31.0
Solyc12g014040.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 5.3e-34 150.2 173 53.2
SGA_v2.0_scaffold130G34343 Striga asiatica HOM05D004118 ORTHO05D004686 5.3e-34 150.2 672 32.1
Zm00001eb395950 Zea mays HOM05D004118 ORTHO05D004686 5.3e-34 150.2 781 28.0
THA.LOC104798758 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 1.6e-33 148.7 549 30.4
AT3G15095 Arabidopsis thaliana HOM05D004118 ORTHO05D004686 3.5e-33 147.5 449 37.9
Atru.chr2.2380 Acer truncatum HOM05D004118 ORTHO05D004686 4.5e-33 147.1 301 41.2
Lsat_1_v5_gn_4_172920 Lactuca sativa HOM05D004118 ORTHO05D004686 7.7e-33 146.4 164 56.7
BcaB06g29535 Brassica carinata HOM05D004118 ORTHO05D004686 1.0e-32 146.0 682 30.6
BraA05t22255Z Brassica rapa HOM05D004118 ORTHO05D004686 3.8e-32 144.1 681 30.8
Atru.chr2.2381 Acer truncatum HOM05D004118 ORTHO05D004686 6.5e-32 143.3 151 57.6
SEGI_08873 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 1.2e-30 139.0 650 34.9
Cc04_g12070 Coffea canephora HOM05D004118 ORTHO05D004686 2.7e-30 137.9 129 60.5
AUR62019494 Chenopodium quinoa HOM05D004118 ORTHO05D004686 4.0e-29 134.0 447 40.0
Cfa006262 Carpinus fangiana HOM05D000001 ORTHO05D000003 1.6e-22 112.1 106 60.4
Lsat_1_v5_gn_1_36460 Lactuca sativa HOM05D004118 ORTHO05D004686 3.6e-22 110.9 107 58.9
HPP92_003895 Vanilla planifolia HOM05D004118 ORTHO05D004686 1.5e-20 105.5 416 29.8
HPP92_003896 Vanilla planifolia HOM05D004118 ORTHO05D004686 1.7e-19 102.1 147 42.9
CDE10G0599 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 1.0e-16 92.8 259 29.3
SEGI_02629 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 1.6e-14 85.5 317 30.0
CDE10G0292 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 2.8e-14 84.7 414 27.3
Lj1P837T15 Lonicera japonica HOM05D004118 ORTHO05D004686 5.2e-13 80.5 65 67.7
Actinidia33372 Actinidia chinensis HOM05D004118 ORTHO05D004686 3.2e-10 71.2 161 37.3
TPR.G17527 Trifolium pratense HOM05D004118 ORTHO05D004686 3.2e-10 71.2 51 74.5
CDE02G0061 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 2.3e-08 65.1 589 22.9
TWI53G1356 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 1.5e-07 62.4 256 26.6
Nn2g10698 Nelumbo nucifera HOM05D004499 ORTHO05D004928 1.9e-07 62.0 276 28.3
QL07p045089 Quercus lobata HOM05D004499 ORTHO05D004928 7.3e-07 60.1 314 29.3
Hma1.2p1_0350F.1_g132810 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 3.6e-06 57.8 292 26.4
PGR004G1454 Punica granatum HOM05D004499 ORTHO05D004928 6.2e-06 57.0 249 30.5
Aqoxy4G03228 Aquilegia oxysepala HOM05D004499 ORTHO05D004928 8.0e-06 56.6 35 68.6


User provided reference genes

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