Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009775 Camellia sinensis var. sinensis HOM05D004932 ORTHO05D005622 7.2e-154 547.4 306 100.0
Dinv42295 Davidia involucrata HOM05D004932 ORTHO05D005622 1.4e-117 426.8 306 73.5
Actinidia29889 Actinidia chinensis HOM05D004932 ORTHO05D005622 3.3e-114 415.6 307 73.0
Dinv36742 Davidia involucrata HOM05D004932 ORTHO05D005622 4.3e-114 415.2 306 73.5
Hma1.2p1_0798F.1_g219580 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 5.2e-112 408.3 306 70.9
GSVIVG01015235001 Vitis vinifera HOM05D004932 ORTHO05D005622 1.1e-106 390.6 300 72.7
vmacro06275 Vaccinium macrocarpon HOM05D004932 ORTHO05D005622 1.6e-105 386.7 306 71.9
CiPaw.03G218800 Carya illinoinensis HOM05D004932 ORTHO05D005622 1.8e-104 383.3 306 70.9
Nitab4.5_0007297g0010 Nicotiana tabacum HOM05D004932 ORTHO05D005622 1.8e-104 383.3 299 67.6
Lj7C672T15 Lonicera japonica HOM05D004932 ORTHO05D005622 5.2e-104 381.7 300 71.7
Haze_25884 Corylus avellana HOM05D004932 ORTHO05D005622 8.9e-104 380.9 306 70.9
Cc06_g11080 Coffea canephora HOM05D004932 ORTHO05D005622 7.5e-103 377.9 307 70.7
Atru.chr7.1544 Acer truncatum HOM05D004932 ORTHO05D005622 2.9e-102 375.9 308 70.8
CANSAT56G0365 Cannabis sativa HOM05D004932 ORTHO05D005622 2.9e-102 375.9 299 66.2
Nitab4.5_0000713g0230 Nicotiana tabacum HOM05D004932 ORTHO05D005622 6.4e-102 374.8 299 66.6
Glyma.07G128200 Glycine max HOM05D004932 ORTHO05D005622 8.3e-102 374.4 296 68.9
QL02p063162 Quercus lobata HOM05D004932 ORTHO05D005622 5.4e-101 371.7 305 69.8
Medtr6g091780 Medicago truncatula HOM05D004932 ORTHO05D005622 1.6e-100 370.2 298 65.1
Thecc.09G093000 Theobroma cacao HOM05D004932 ORTHO05D005622 1.6e-100 370.2 300 67.7
Lj2g0005770 Lotus japonicus HOM05D004932 ORTHO05D005622 2.1e-100 369.8 302 64.9
FAN19G2121 Fragaria x ananassa HOM05D004932 ORTHO05D005622 3.5e-100 369.0 306 64.4
Lalb_Chr24g0393881 Lupinus albus HOM05D004932 ORTHO05D005622 4.6e-100 368.6 293 67.9
Rhsim03G0234400 Rhododendron simsii HOM05D004932 ORTHO05D005622 4.6e-100 368.6 309 73.1
Ca_25616_v3 Cicer arietinum L. HOM05D004932 ORTHO05D005622 7.8e-100 367.9 299 65.2
FvH4_1g07000 Fragaria vesca HOM05D004932 ORTHO05D005622 7.8e-100 367.9 306 61.8
VMungo0464G1844 Vigna mungo HOM05D004932 ORTHO05D005622 7.8e-100 367.9 296 69.6
FAN23G2709 Fragaria x ananassa HOM05D004932 ORTHO05D005622 1.0e-99 367.5 306 64.1
Lalb_Chr14g0375311 Lupinus albus HOM05D004932 ORTHO05D005622 1.3e-99 367.1 292 66.1
Nn6g35421 Nelumbo nucifera HOM05D004932 ORTHO05D005622 2.3e-99 366.3 307 63.8
FAN26G1352 Fragaria x ananassa HOM05D004932 ORTHO05D005622 3.0e-99 365.9 306 63.4
FAN26G3436 Fragaria x ananassa HOM05D004932 ORTHO05D005622 3.0e-99 365.9 306 63.4
Duzib150G0148 Durio zibethinus HOM05D004932 ORTHO05D005622 6.6e-99 364.8 306 62.1
PGSC0003DMG400008434 Solanum tuberosum HOM05D004932 ORTHO05D005622 8.6e-99 364.4 300 65.3
Eucgr.C00917 Eucalyptus grandis HOM05D004932 ORTHO05D005622 1.1e-98 364.0 307 62.9
Duzib168G1170 Durio zibethinus HOM05D004932 ORTHO05D005622 2.5e-98 362.8 306 62.1
FAN28G1050 Fragaria x ananassa HOM05D004932 ORTHO05D005622 3.3e-98 362.5 306 63.1
MSTRG.10579 Avicennia marina HOM05D004932 ORTHO05D005622 4.3e-98 362.1 299 64.2
arahy.Tifrunner.gnm1.ann1.NAI4LE Arachis hypogaea HOM05D004932 ORTHO05D005622 2.1e-97 359.8 299 64.9
CAN.G1837.4 Capsicum annuum HOM05D004932 ORTHO05D005622 2.8e-97 359.4 299 63.9
SalBow1G2721 Salvia bowleyana HOM05D004932 ORTHO05D005622 4.7e-97 358.6 304 62.2
arahy.Tifrunner.gnm1.ann1.RRYY0T Arachis hypogaea HOM05D004932 ORTHO05D005622 1.4e-96 357.1 300 64.7
PGR142G3354 Punica granatum HOM05D004932 ORTHO05D005622 1.4e-96 357.1 302 62.6
Prupe.7G213500 Prunus persica HOM05D004932 ORTHO05D005622 2.4e-96 356.3 299 69.6
Sopen07g015910 Solanum pennellii HOM05D004932 ORTHO05D005622 6.8e-96 354.8 300 64.0
Manes.16G104000 Manihot esculenta HOM05D004932 ORTHO05D005622 8.9e-96 354.4 308 59.7
Glyma.01G003700 Glycine max HOM05D004932 ORTHO05D005622 2.0e-95 353.2 300 66.3
TWI63G1476 Tripterygium wilfordii HOM05D004932 ORTHO05D005622 2.0e-95 353.2 306 62.1
MELO3C015448.2 Cucumis melo HOM05D004932 ORTHO05D005622 5.8e-95 351.7 299 65.9
Manes.14G155500 Manihot esculenta HOM05D004932 ORTHO05D005622 7.6e-95 351.3 308 60.7
CsaV3_1G040210 Cucumis sativus L. HOM05D004932 ORTHO05D005622 1.3e-94 350.5 300 66.0
CsaV3_UNG060480 Cucumis sativus L. HOM05D004932 ORTHO05D005622 1.3e-94 350.5 300 66.0
MD02G1074400 Malus domestica HOM05D004932 ORTHO05D005622 1.3e-94 350.5 306 66.3
MD15G1203900 Malus domestica HOM05D004932 ORTHO05D005622 1.3e-94 350.5 307 62.2
Solyc07g032250.4 Solanum lycopersicum HOM05D004932 ORTHO05D005622 2.2e-94 349.7 300 63.3
TPR.G35493 Trifolium pratense HOM05D004932 ORTHO05D005622 1.9e-93 346.7 304 65.8
Aqoxy7G01262 Aquilegia oxysepala HOM05D004932 ORTHO05D005622 3.2e-93 345.9 306 57.8
Phvul.004G172100 Phaseolus vulgaris HOM05D004932 ORTHO05D005622 3.2e-93 345.9 295 66.4
Gohir.D07G010400 Gossypium hirsutum HOM05D004932 ORTHO05D005622 4.2e-93 345.5 286 62.9
Gorai.001G010800 Gossypium raimondii HOM05D004932 ORTHO05D005622 4.2e-93 345.5 286 62.9
Gohir.A07G010100 Gossypium hirsutum HOM05D004932 ORTHO05D005622 1.2e-92 344.0 302 60.3
PSO210G2479 Papaver somniferum HOM05D004932 ORTHO05D005622 1.6e-92 343.6 293 63.1
EL10Ac8g19275 Beta vulgaris HOM05D004932 ORTHO05D005622 3.0e-91 339.3 303 59.7
Medtr6g090810 Medicago truncatula HOM05D004932 ORTHO05D005622 3.9e-91 339.0 298 61.7
Lsat_1_v5_gn_5_145840 Lactuca sativa HOM05D004932 ORTHO05D005622 5.1e-91 338.6 312 67.0
SGA_v2.0_scaffold10G05207 Striga asiatica HOM05D004932 ORTHO05D005622 1.9e-90 336.7 359 60.2
HanXRQChr10g0319131 Helianthus annuus HOM05D004932 ORTHO05D005622 3.3e-90 335.9 310 65.8
Psat1g049760 Pisum sativum HOM05D004932 ORTHO05D005622 4.3e-90 335.5 296 66.2
Potri.018G067300 Populus trichocarpa HOM05D004932 ORTHO05D005622 4.3e-90 335.5 308 61.0
Cpa.g.sc7.248 Carica papaya HOM05D004932 ORTHO05D005622 1.6e-89 333.6 306 61.1
arahy.Tifrunner.gnm1.ann1.E8KE86 Arachis hypogaea HOM05D004932 ORTHO05D005622 2.1e-89 333.2 302 62.9
PSO210G4737 Papaver somniferum HOM05D004932 ORTHO05D005622 2.8e-89 332.8 296 64.5
ATR0789G094 Amborella trichopoda HOM05D004932 ORTHO05D005622 6.2e-89 331.6 303 55.4
COL.COLO4_18228 Corchorus olitorius HOM05D004932 ORTHO05D005622 1.8e-88 330.1 300 60.0
arahy.Tifrunner.gnm1.ann1.XF40UC Arachis hypogaea HOM05D004932 ORTHO05D005622 2.4e-88 329.7 296 63.5
Peaxi162Scf00444g00617 Petunia axillaris HOM05D004932 ORTHO05D005622 3.1e-88 329.3 299 58.9
Ciclev10009015m.g Citrus clementina HOM05D004932 ORTHO05D005622 5.3e-88 328.6 303 65.7
Migut.K00580 Erythranthe guttata HOM05D004932 ORTHO05D005622 5.3e-88 328.6 298 66.8
ClCG03G015800 Citrullus lanatus HOM05D004932 ORTHO05D005622 5.8e-87 325.1 306 58.2
Sabra18G0059800 Salix brachista HOM05D004932 ORTHO05D005622 7.6e-87 324.7 308 60.4
Medtr6g092180 Medicago truncatula HOM05D004932 ORTHO05D005622 2.9e-86 322.8 298 60.1
RcHm_v2.0_Chr2g0092951 Rosa chinensis HOM05D004932 ORTHO05D005622 1.4e-85 320.5 308 61.4
THA.LOC104814605 Tarenaya hassleriana HOM05D004932 ORTHO05D005622 1.4e-85 320.5 310 55.5
Sc18g0001850 Simmondsia chinensis HOM05D004932 ORTHO05D005622 5.4e-85 318.5 258 62.8
DCAR_011989 Daucus carota HOM05D004932 ORTHO05D005622 9.3e-85 317.8 265 70.2
AL7G22880 Arabidopsis lyrata HOM05D004932 ORTHO05D005622 3.5e-84 315.8 302 58.6
Oeu000325.1 Olea europaea HOM05D001440 ORTHO05D005622 4.6e-84 315.5 250 66.8
Carub.0007s1103 Capsella rubella HOM05D004932 ORTHO05D005622 6.0e-84 315.1 303 58.7
A01p08520 Brassica napus HOM05D004932 ORTHO05D005622 1.7e-83 313.5 306 55.2
AT4G29520 Arabidopsis thaliana HOM05D004932 ORTHO05D005622 8.7e-83 311.2 302 58.3
C01p09950 Brassica napus HOM05D004932 ORTHO05D005622 3.3e-82 309.3 314 56.1
BolC1t00957H Brassica oleracea HOM05D004932 ORTHO05D005622 3.3e-82 309.3 314 56.1
ECA234G2984 Erigeron canadensis HOM05D004932 ORTHO05D005622 7.3e-82 308.1 273 59.0
Sp7g27380 Schrenkiella parvula HOM05D004932 ORTHO05D005622 9.6e-82 307.8 307 58.6
BcaC09g51740 Brassica carinata HOM05D004932 ORTHO05D005622 1.3e-81 307.4 305 56.4
BraA01t00801Z Brassica rapa HOM05D004932 ORTHO05D005622 3.6e-81 305.8 314 53.5
Sed0008469 Sechium edule HOM05D004932 ORTHO05D005622 1.8e-80 303.5 225 68.0
Thhalv10025804m.g Eutrema salsugineum HOM05D004932 ORTHO05D005622 3.1e-80 302.8 306 53.6
unitig_749.g14227 Utricularia gibba HOM05D004932 ORTHO05D005622 5.3e-80 302.0 273 60.1
CARHR237350 Cardamine hirsuta HOM05D004932 ORTHO05D005622 1.5e-79 300.4 305 58.0
CDE05G0556 Ceratophyllum demersum HOM05D004932 ORTHO05D005622 3.4e-79 299.3 308 53.9
A08p19620 Brassica napus HOM05D004932 ORTHO05D005622 4.9e-78 295.4 314 54.1
BraA08t33920Z Brassica rapa HOM05D004932 ORTHO05D005622 2.4e-77 293.1 314 53.8
BcaC01g01175 Brassica carinata HOM05D004932 ORTHO05D005622 9.3e-77 291.2 314 53.5
BolC3t21234H Brassica oleracea HOM05D004932 ORTHO05D005622 1.2e-76 290.8 314 53.5
TAR365G0154 Trochodendron aralioides HOM05D004932 ORTHO05D005622 2.7e-76 289.7 241 63.9
C03p89240 Brassica napus HOM05D004932 ORTHO05D005622 6.0e-76 288.5 314 53.2
Medtr6g092150 Medicago truncatula HOM05D004932 ORTHO05D005622 3.9e-75 285.8 327 53.2
BcaB03g12610 Brassica carinata HOM05D004932 ORTHO05D005622 5.1e-75 285.4 308 55.2
Os06g0150400 Oryza sativa ssp. japonica HOM05D004932 ORTHO05D005622 6.7e-75 285.0 280 57.1
AUR62027447 Chenopodium quinoa HOM05D004932 ORTHO05D005622 1.1e-74 284.3 302 50.0
AUR62031253 Chenopodium quinoa HOM05D004932 ORTHO05D005622 1.1e-74 284.3 302 49.3
Ah.09g228480 Amaranthus hybridus HOM05D004932 ORTHO05D005622 7.4e-74 281.6 300 50.7
Aa31LG2G20960 Aethionema arabicum HOM05D004932 ORTHO05D005622 3.7e-73 279.3 305 57.0
Zm00001eb376850 Zea mays HOM05D004932 ORTHO05D005622 6.2e-73 278.5 305 51.1
Cfa003116 Carpinus fangiana HOM05D004932 ORTHO05D005622 6.9e-72 275.0 229 72.1
CDE05G1139 Ceratophyllum demersum HOM05D004932 ORTHO05D005622 1.5e-71 273.9 262 56.1
SEGI_24488 Sequoiadendron giganteum HOM05D004932 ORTHO05D005622 2.9e-70 269.6 292 49.7
HPP92_004560 Vanilla planifolia HOM05D004932 ORTHO05D005622 1.8e-67 260.4 305 50.5
unitig_78.g29619 Utricularia gibba HOM05D004932 ORTHO05D005622 3.1e-64 249.6 258 54.7
HanXRQChr12g0355371 Helianthus annuus HOM05D004932 ORTHO05D005622 1.7e-62 243.8 311 53.4
arahy.Tifrunner.gnm1.ann1.GR1INA Arachis hypogaea HOM05D004932 ORTHO05D005622 4.8e-57 225.7 178 64.0
Pp3c4_19450 Physcomitrium patens HOM05D004932 ORTHO05D005622 1.0e-54 218.0 305 44.9
Mapoly0075s0048 Marchantia polymorpha HOM05D004932 ORTHO05D005622 3.8e-54 216.1 292 46.2
SHI02816 Sapria himalayana HOM05D004932 ORTHO05D005622 8.5e-54 214.9 219 51.6
AagrBONN_evm.TU.Sc2ySwM_362.2022 Anthoceros agrestis HOM05D004932 ORTHO05D005622 2.4e-48 196.8 181 54.1
SMO361G0136 Selaginella moellendorffii HOM05D004932 ORTHO05D005622 4.4e-42 176.0 220 40.9
CBR_g8029 Chara braunii HOM05D004932 ORTHO05D005622 1.1e-37 161.4 182 44.5
unitig_26.g9168 Utricularia gibba HOM05D004932 ORTHO05D005622 9.4e-37 158.3 131 61.8
arahy.Tifrunner.gnm1.ann1.Y4MEFZ Arachis hypogaea HOM05D004932 ORTHO05D005622 1.8e-35 154.1 99 76.8
Cc06_g18040 Coffea canephora HOM05D004932 ORTHO05D005622 8.8e-35 151.8 200 45.5
Oeu037599.1 Olea europaea HOM05D004932 ORTHO05D005622 1.4e-32 144.4 289 38.4
Hma1.2p1_1586F.1_g292210 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 4.4e-26 122.9 69 79.7
Hma1.2p1_0798F.1_g219570 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 3.7e-25 119.8 134 59.7
Hma1.2p1_1074F.1_g254276 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 3.7e-25 119.8 134 59.7
PRCOL_00005979 Prasinoderma coloniale HOM05D004932 ORTHO05D005622 4.5e-23 112.8 195 36.9
arahy.Tifrunner.gnm1.ann1.XYZ5FS Arachis hypogaea HOM05D004932 ORTHO05D005622 8.5e-22 108.6 67 71.6
Cre03.g151700 Chlamydomonas reinhardtii HOM05D004932 ORTHO05D005622 2.5e-21 107.1 185 35.7
MCO04G519 Micromonas commoda HOM05D004932 ORTHO05D005622 9.4e-21 105.1 159 35.8
Hma1.2p1_1881F.1_g306380 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 1.5e-18 97.8 77 61.0
RcHm_v2.0_Chr5g0016971 Rosa chinensis HOM05D004932 ORTHO05D005622 1.7e-17 94.4 64 71.9
RcHm_v2.0_Chr4g0402141 Rosa chinensis HOM05D004932 ORTHO05D005622 4.9e-17 92.8 61 73.8
Nn3g21874 Nelumbo nucifera HOM05D004932 ORTHO05D005622 9.5e-13 78.6 46 71.7
CARHR109770 Cardamine hirsuta HOM05D004932 ORTHO05D005622 1.6e-12 77.8 119 42.9
Nn2g13205 Nelumbo nucifera HOM05D004932 ORTHO05D005622 2.8e-12 77.0 45 71.1
CiPaw.05G072200 Carya illinoinensis HOM05D004932 ORTHO05D005622 6.1e-12 75.9 50 70.0
Medtr6g077350 Medicago truncatula HOM05D004932 ORTHO05D005622 8.0e-12 75.5 43 81.4
Oeu037598.1 Olea europaea HOM05D004932 ORTHO05D005622 8.9e-11 72.0 80 62.5
Medtr6g091840 Medicago truncatula HOM05D004932 ORTHO05D005622 9.2e-08 62.0 137 43.1
arahy.Tifrunner.gnm1.ann1.P1T2M1 Arachis hypogaea HOM05D000368 ORTHO05D000289 1.2e-07 61.6 39 69.2


User provided reference genes

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