Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009749 Camellia sinensis var. sinensis HOM05D000229 ORTHO05D000182 8.6e-31 136.3 69 100.0
Rhsim09G0022700 Rhododendron simsii HOM05D000229 ORTHO05D000182 2.4e-12 75.1 59 64.4
Actinidia31368 Actinidia chinensis HOM05D000229 ORTHO05D000182 4.0e-12 74.3 59 66.1
CSS0009686 Camellia sinensis var. sinensis HOM05D000229 ORTHO05D000182 6.9e-12 73.6 59 66.1
Rhsim09G0022600 Rhododendron simsii HOM05D000229 ORTHO05D000182 2.6e-11 71.6 59 61.0
vmacro00631 Vaccinium macrocarpon HOM05D000229 ORTHO05D000182 2.2e-10 68.6 59 61.0
Rhsim09G0020000 Rhododendron simsii HOM05D000229 ORTHO05D000182 8.4e-10 66.6 59 57.6
vmacro04011 Vaccinium macrocarpon HOM05D000229 ORTHO05D000182 1.9e-09 65.5 59 55.9
Hma1.2p1_0289F.1_g114670 Hydrangea macrophylla HOM05D000229 ORTHO05D000182 5.4e-09 63.9 59 55.9
Lju337A4T21 Lonicera japonica HOM05D000229 ORTHO05D000182 9.3e-09 63.2 59 55.9
Dinv31122 Davidia involucrata HOM05D000229 ORTHO05D000182 3.5e-08 61.2 59 59.3
COL.COLO4_37878 Corchorus olitorius HOM05D000229 ORTHO05D000182 6.0e-08 60.5 59 55.9
COL.COLO4_37879 Corchorus olitorius HOM05D000229 ORTHO05D000182 7.9e-08 60.1 59 59.3
Dinv31123 Davidia involucrata HOM05D000229 ORTHO05D000182 1.0e-07 59.7 59 57.6
CSS0039382 Camellia sinensis var. sinensis HOM05D000229 ORTHO05D000182 1.3e-07 59.3 59 57.6
Rhsim12G0051300 Rhododendron simsii HOM05D000229 ORTHO05D000182 1.3e-07 59.3 59 55.9
CSS0010286 Camellia sinensis var. sinensis HOM05D000229 ORTHO05D000182 2.3e-07 58.5 59 52.5
COL.COLO4_37880 Corchorus olitorius HOM05D000229 ORTHO05D000182 2.3e-07 58.5 59 57.6
Nitab4.5_0003602g0050 Nicotiana tabacum HOM05D000229 ORTHO05D000182 2.3e-07 58.5 59 57.6
RcHm_v2.0_Chr7g0225361 Rosa chinensis HOM05D000229 ORTHO05D000182 2.3e-07 58.5 59 55.9
Duzib251G0157 Durio zibethinus HOM05D000229 ORTHO05D000182 3.0e-07 58.2 59 57.6
Lj3A1047G39 Lonicera japonica HOM05D000229 ORTHO05D000182 3.0e-07 58.2 59 55.9
PSO210G7134 Papaver somniferum HOM05D000229 ORTHO05D000182 3.9e-07 57.8 59 54.2
vmacro10751 Vaccinium macrocarpon HOM05D000229 ORTHO05D000182 3.9e-07 57.8 59 54.2
Dinv20489 Davidia involucrata HOM05D000229 ORTHO05D000182 5.1e-07 57.4 59 50.8
Dinv20553 Davidia involucrata HOM05D000229 ORTHO05D000182 5.1e-07 57.4 59 50.8
FvH4_3g20300 Fragaria vesca HOM05D000229 ORTHO05D000182 6.7e-07 57.0 59 54.2
FAN11G3233 Fragaria x ananassa HOM05D000229 ORTHO05D000182 6.7e-07 57.0 59 54.2
FAN16G1612 Fragaria x ananassa HOM05D000229 ORTHO05D000182 6.7e-07 57.0 59 54.2
MSTRG.8104 Avicennia marina HOM05D000229 ORTHO05D000182 8.7e-07 56.6 59 52.5
RcHm_v2.0_Chr1g0329311 Rosa chinensis HOM05D000229 ORTHO05D000182 8.7e-07 56.6 59 55.9
TAR622G1015 Trochodendron aralioides HOM05D000229 ORTHO05D000182 8.7e-07 56.6 59 49.2
DCAR_024517 Daucus carota HOM05D000229 ORTHO05D000182 1.1e-06 56.2 59 55.9
Dinv07303 Davidia involucrata HOM05D000229 ORTHO05D000182 1.1e-06 56.2 59 50.8
Duzib268G0570 Durio zibethinus HOM05D000229 ORTHO05D000182 1.1e-06 56.2 59 55.9
PGR102G0478 Punica granatum HOM05D000229 ORTHO05D000182 1.1e-06 56.2 59 52.5
Rhsim09G0021000 Rhododendron simsii HOM05D000002 ORTHO05D000047 1.1e-06 56.2 56 55.4
Cc11_g14080 Coffea canephora HOM05D000229 ORTHO05D000182 1.5e-06 55.8 59 55.9
Dinv07016 Davidia involucrata HOM05D000229 ORTHO05D000182 1.5e-06 55.8 59 49.2
Dinv20487 Davidia involucrata HOM05D000229 ORTHO05D000182 1.5e-06 55.8 59 49.2
Dinv20554 Davidia involucrata HOM05D000229 ORTHO05D000182 1.5e-06 55.8 59 49.2
Duzib248G1221 Durio zibethinus HOM05D000229 ORTHO05D000182 1.5e-06 55.8 59 52.5
Gohir.A03G143300 Gossypium hirsutum HOM05D000229 ORTHO05D000182 1.5e-06 55.8 59 52.5
Hma1.2p1_0265F.1_g106220 Hydrangea macrophylla HOM05D000229 ORTHO05D000182 1.5e-06 55.8 59 52.5
Lsat_1_v5_gn_3_27201 Lactuca sativa HOM05D000229 ORTHO05D000182 1.5e-06 55.8 59 54.2
Peaxi162Scf01141g00033 Petunia axillaris HOM05D000229 ORTHO05D000182 1.5e-06 55.8 59 55.9
vmacro01201 Vaccinium macrocarpon HOM05D000229 ORTHO05D000182 1.5e-06 55.8 59 52.5
CSS0023009 Camellia sinensis var. sinensis HOM05D000229 ORTHO05D000182 1.9e-06 55.5 59 50.8
CANSAT78G1644 Cannabis sativa HOM05D000229 ORTHO05D000182 1.9e-06 55.5 59 52.5
Gohir.D02G166700 Gossypium hirsutum HOM05D000229 ORTHO05D000182 1.9e-06 55.5 59 52.5
Rhsim09G0084200 Rhododendron simsii HOM05D000229 ORTHO05D000182 1.9e-06 55.5 59 50.8
Sc11g0001450 Simmondsia chinensis HOM05D000229 ORTHO05D000182 1.9e-06 55.5 59 52.5
Aqoxy3G04175 Aquilegia oxysepala HOM05D000229 ORTHO05D000182 2.5e-06 55.1 59 52.5
Dinv20488 Davidia involucrata HOM05D000229 ORTHO05D000182 2.5e-06 55.1 59 47.5
Duzib248G1207 Durio zibethinus HOM05D000229 ORTHO05D000182 2.5e-06 55.1 59 54.2
FAN22G1907 Fragaria x ananassa HOM05D000229 ORTHO05D000182 2.5e-06 55.1 59 52.5
Hma1.2p1_0265F.1_g106210 Hydrangea macrophylla HOM05D000229 ORTHO05D000182 2.5e-06 55.1 59 52.5
Nn3g18482 Nelumbo nucifera HOM05D000229 ORTHO05D000182 2.5e-06 55.1 59 47.5
SalBow2G0854 Salvia bowleyana HOM05D000229 ORTHO05D000182 2.5e-06 55.1 59 49.2
PGSC0003DMG400022641 Solanum tuberosum HOM05D000229 ORTHO05D000182 2.5e-06 55.1 58 53.4
Thecc.02G301600 Theobroma cacao HOM05D000229 ORTHO05D000182 2.5e-06 55.1 59 47.5
Thecc.02G301800 Theobroma cacao HOM05D000229 ORTHO05D000182 2.5e-06 55.1 59 47.5
Actinidia08186 Actinidia chinensis HOM05D000229 ORTHO05D000182 3.3e-06 54.7 59 55.9
Ciclev10017512m.g Citrus clementina HOM05D000229 ORTHO05D000182 3.3e-06 54.7 60 51.7
COL.COLO4_24819 Corchorus olitorius HOM05D000229 ORTHO05D000182 3.3e-06 54.7 59 54.2
Gohir.A03G143700 Gossypium hirsutum HOM05D000229 ORTHO05D000182 3.3e-06 54.7 59 52.5
Gorai.005G186700 Gossypium raimondii HOM05D000229 ORTHO05D000182 3.3e-06 54.7 59 52.5
PSO040G0033 Papaver somniferum HOM05D000229 ORTHO05D000182 3.3e-06 54.7 59 52.5
RcHm_v2.0_Chr4g0445421 Rosa chinensis HOM05D000229 ORTHO05D000182 3.3e-06 54.7 59 54.2
Thecc.02G240200 Theobroma cacao HOM05D000229 ORTHO05D000182 3.3e-06 54.7 59 54.2
Thecc.02G301900 Theobroma cacao HOM05D000229 ORTHO05D000182 3.3e-06 54.7 59 50.8
Thecc.02G302000 Theobroma cacao HOM05D000229 ORTHO05D000182 3.3e-06 54.7 59 49.2
Atru.chr11.1938 Acer truncatum HOM05D000229 ORTHO05D000182 4.3e-06 54.3 59 54.2
CiPaw.05G159800 Carya illinoinensis HOM05D000229 ORTHO05D000182 4.3e-06 54.3 59 49.2
FAN21G1709 Fragaria x ananassa HOM05D000229 ORTHO05D000182 4.3e-06 54.3 59 52.5
Gohir.D01G135500 Gossypium hirsutum HOM05D000229 ORTHO05D000182 4.3e-06 54.3 60 53.3
PSO135G0514 Papaver somniferum HOM05D000229 ORTHO05D000182 4.3e-06 54.3 59 50.8
DCAR_024516 Daucus carota HOM05D000229 ORTHO05D000182 5.6e-06 53.9 59 50.8
FvH4_4g25612 Fragaria vesca HOM05D000229 ORTHO05D000182 5.6e-06 53.9 59 50.8
Gohir.D02G166500 Gossypium hirsutum HOM05D000229 ORTHO05D000182 5.6e-06 53.9 59 52.5
Hma1.2p1_0055F.1_g031320 Hydrangea macrophylla HOM05D000229 ORTHO05D000182 5.6e-06 53.9 59 47.5
Manes.17G090700 Manihot esculenta HOM05D000229 ORTHO05D000182 5.6e-06 53.9 59 47.5
PSO161G0056 Papaver somniferum HOM05D000229 ORTHO05D000182 5.6e-06 53.9 59 54.2
TWI36G0578 Tripterygium wilfordii HOM05D000229 ORTHO05D000182 5.6e-06 53.9 59 50.8
arahy.Tifrunner.gnm1.ann1.LKGH4A Arachis hypogaea HOM05D000229 ORTHO05D000182 7.4e-06 53.5 59 50.8
arahy.Tifrunner.gnm1.ann1.QZ74IT Arachis hypogaea HOM05D000229 ORTHO05D000182 7.4e-06 53.5 59 50.8
arahy.Tifrunner.gnm1.ann1.W0G0JC Arachis hypogaea HOM05D000229 ORTHO05D001189 7.4e-06 53.5 59 50.8
COL.COLO4_27560 Corchorus olitorius HOM05D000229 ORTHO05D000182 7.4e-06 53.5 59 52.5
Dinv31121 Davidia involucrata HOM05D000229 ORTHO05D000182 7.4e-06 53.5 59 54.2
Duzib251G0724 Durio zibethinus HOM05D000229 ORTHO05D000182 7.4e-06 53.5 61 52.5
Eucgr.B02568 Eucalyptus grandis HOM05D000229 ORTHO05D000182 7.4e-06 53.5 59 54.2
MD13G1014600 Malus domestica HOM05D000229 ORTHO05D000182 7.4e-06 53.5 59 50.8
MD16G1011800 Malus domestica HOM05D000229 ORTHO05D000182 7.4e-06 53.5 59 50.8
Manes.17G090600 Manihot esculenta HOM05D000229 ORTHO05D000182 7.4e-06 53.5 59 47.5
PSO040G0011 Papaver somniferum HOM05D000229 ORTHO05D000182 7.4e-06 53.5 59 52.5
RcHm_v2.0_Chr4g0395321 Rosa chinensis HOM05D000229 ORTHO05D000182 7.4e-06 53.5 59 52.5
RcHm_v2.0_Chr5g0023781 Rosa chinensis HOM05D000229 ORTHO05D000182 7.4e-06 53.5 59 52.5
CSS0038468 Camellia sinensis var. sinensis HOM05D000229 ORTHO05D000182 9.6e-06 53.1 58 50.0
COL.COLO4_03444 Corchorus olitorius HOM05D000229 ORTHO05D000182 9.6e-06 53.1 59 54.2
Duzib251G0256 Durio zibethinus HOM05D000229 ORTHO05D000182 9.6e-06 53.1 59 47.5
Eucgr.B02567 Eucalyptus grandis HOM05D000229 ORTHO05D000182 9.6e-06 53.1 59 54.2
Gohir.D02G138000 Gossypium hirsutum HOM05D000229 ORTHO05D000182 9.6e-06 53.1 59 47.5
Gorai.005G154500 Gossypium raimondii HOM05D000229 ORTHO05D000182 9.6e-06 53.1 59 47.5
MBI11_g02030_MAGBIO Magnolia biondii HOM05D000229 ORTHO05D000182 9.6e-06 53.1 59 47.5
MBI11_g24655_MAGBIO Magnolia biondii HOM05D000229 ORTHO05D000182 9.6e-06 53.1 59 47.5
MD16G1012000 Malus domestica HOM05D000229 ORTHO05D000182 9.6e-06 53.1 59 50.8
Oeu010663.1 Olea europaea HOM05D000229 ORTHO05D000182 9.6e-06 53.1 59 50.8
GSVIVG01011579001 Vitis vinifera HOM05D000229 ORTHO05D000182 9.6e-06 53.1 59 50.8


User provided reference genes

Program Settings