Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009729 Camellia sinensis var. sinensis HOM05D006223 ORTHO05D009080 1.7e-104 382.9 216 100.0
Dinv04050 Davidia involucrata HOM05D006223 ORTHO05D009080 5.7e-73 278.1 202 73.3
Actinidia11984 Actinidia chinensis HOM05D006223 ORTHO05D009080 7.8e-70 267.7 205 70.7
Lj7A96T45 Lonicera japonica HOM05D006223 ORTHO05D009080 3.0e-61 239.2 217 60.8
vmacro05408 Vaccinium macrocarpon HOM05D006223 ORTHO05D009080 1.5e-60 236.9 292 51.4
Rhsim10G0099700 Rhododendron simsii HOM05D006223 ORTHO05D009080 1.6e-59 233.4 219 62.6
GSVIVG01000109001 Vitis vinifera HOM05D006223 ORTHO05D009080 2.1e-59 233.0 197 61.9
GSVIVG01000118001 Vitis vinifera HOM05D006223 ORTHO05D009080 8.1e-59 231.1 199 62.8
Ca_22107_v3 Cicer arietinum L. HOM05D006223 ORTHO05D009080 5.2e-58 228.4 201 61.7
Ca_22114_v3 Cicer arietinum L. HOM05D006223 ORTHO05D009080 5.2e-58 228.4 201 61.7
TWI73G0604 Tripterygium wilfordii HOM05D006223 ORTHO05D009080 5.2e-58 228.4 194 63.9
Glyma.17G160900 Glycine max HOM05D006223 ORTHO05D009080 6.8e-58 228.0 197 63.5
CAN.G1075.35 Capsicum annuum HOM05D006223 ORTHO05D009080 1.5e-57 226.9 199 63.3
Nitab4.5_0000142g0070 Nicotiana tabacum HOM05D006223 ORTHO05D009080 7.5e-57 224.6 213 60.6
Medtr4g097030 Medicago truncatula HOM05D006223 ORTHO05D009080 2.9e-56 222.6 200 61.0
TAR625G1165 Trochodendron aralioides HOM05D006223 ORTHO05D009080 2.9e-56 222.6 199 64.3
Nitab4.5_0002119g0100 Nicotiana tabacum HOM05D006223 ORTHO05D009080 6.4e-56 221.5 197 64.0
TWI09G0585 Tripterygium wilfordii HOM05D006223 ORTHO05D009080 8.3e-56 221.1 196 62.8
Atru.chr3.1008 Acer truncatum HOM05D006223 ORTHO05D009080 1.1e-55 220.7 205 60.0
Sabra01G0139200 Salix brachista HOM05D006223 ORTHO05D009080 4.1e-55 218.8 199 60.8
Glyma.05G105500 Glycine max HOM05D006223 ORTHO05D009080 7.1e-55 218.0 199 61.3
Lj4g0019733 Lotus japonicus HOM05D006223 ORTHO05D009080 7.1e-55 218.0 199 59.8
Nn5g30588 Nelumbo nucifera HOM05D006223 ORTHO05D009080 7.1e-55 218.0 207 58.5
Phvul.003G235100 Phaseolus vulgaris HOM05D006223 ORTHO05D009080 2.1e-54 216.5 196 61.7
Solyc02g092390.3 Solanum lycopersicum HOM05D006223 ORTHO05D009080 3.5e-54 215.7 201 58.2
Haze_15285 Corylus avellana HOM05D006223 ORTHO05D009080 4.6e-54 215.3 212 58.0
TPR.G24252 Trifolium pratense HOM05D006223 ORTHO05D009080 6.0e-54 214.9 195 60.0
PGSC0003DMG400021418 Solanum tuberosum HOM05D006223 ORTHO05D009080 1.0e-53 214.2 204 57.8
Ciclev10026365m.g Citrus clementina HOM05D006223 ORTHO05D009080 1.7e-53 213.4 201 58.7
Potri.001G172500 Populus trichocarpa HOM05D006223 ORTHO05D009080 1.7e-53 213.4 198 59.6
Duzib147G0613 Durio zibethinus HOM05D006223 ORTHO05D009080 2.3e-53 213.0 215 54.9
Sed0023944 Sechium edule HOM05D006223 ORTHO05D009080 3.0e-53 212.6 199 59.8
Cc06_g22830 Coffea canephora HOM05D006223 ORTHO05D009080 3.9e-53 212.2 195 61.5
Psat4g081960 Pisum sativum HOM05D006223 ORTHO05D009080 3.9e-53 212.2 195 57.9
Migut.H00350 Erythranthe guttata HOM05D006223 ORTHO05D009080 6.6e-53 211.5 194 58.8
Thecc.01G072400 Theobroma cacao HOM05D006223 ORTHO05D009080 8.6e-53 211.1 219 53.9
DCAR_025799 Daucus carota HOM05D006223 ORTHO05D009080 1.1e-52 210.7 196 59.7
Gohir.A11G215000 Gossypium hirsutum HOM05D006223 ORTHO05D009080 1.1e-52 210.7 213 53.1
Gorai.007G223400 Gossypium raimondii HOM05D006223 ORTHO05D009080 1.1e-52 210.7 213 52.6
Sopen02g036940 Solanum pennellii HOM05D006223 ORTHO05D009080 1.1e-52 210.7 202 57.4
Cpa.g.sc6.19 Carica papaya HOM05D006223 ORTHO05D009080 1.5e-52 210.3 206 55.8
Lalb_Chr05g0225861 Lupinus albus HOM05D006223 ORTHO05D009080 5.6e-52 208.4 195 59.5
MSTRG.23673 Avicennia marina HOM05D006223 ORTHO05D009080 1.2e-51 207.2 194 55.7
CiPaw.01G004700 Carya illinoinensis HOM05D006223 ORTHO05D009080 2.1e-51 206.5 176 60.8
Gohir.D11G208400 Gossypium hirsutum HOM05D006223 ORTHO05D009080 3.6e-51 205.7 215 53.5
MELO3C020909.2 Cucumis melo HOM05D006223 ORTHO05D009080 8.1e-51 204.5 198 58.1
PSO170G6824 Papaver somniferum HOM05D006223 ORTHO05D009080 1.8e-50 203.4 196 58.2
AUR62040240 Chenopodium quinoa HOM05D006223 ORTHO05D009080 6.8e-50 201.4 196 57.1
HanXRQChr15g0472641 Helianthus annuus HOM05D006223 ORTHO05D009080 8.9e-50 201.1 195 56.9
Manes.12G113900 Manihot esculenta HOM05D006223 ORTHO05D009080 8.9e-50 201.1 199 57.3
Aqoxy5G00869 Aquilegia oxysepala HOM05D006223 ORTHO05D009080 1.5e-49 200.3 197 57.9
Cfa004130 Carpinus fangiana HOM05D006223 ORTHO05D009080 3.4e-49 199.1 141 72.3
AUR62004007 Chenopodium quinoa HOM05D006223 ORTHO05D009080 3.4e-49 199.1 191 58.1
Eucgr.I00706 Eucalyptus grandis HOM05D006223 ORTHO05D009080 7.6e-49 198.0 203 55.2
VMungo0251G3324 Vigna mungo HOM05D006223 ORTHO05D009080 9.9e-49 197.6 195 57.9
PGR004G2352 Punica granatum HOM05D006223 ORTHO05D009080 6.4e-48 194.9 169 62.1
CANSAT01G0277 Cannabis sativa HOM05D006223 ORTHO05D009080 1.9e-47 193.4 198 57.6
Lsat_1_v5_gn_3_86181 Lactuca sativa HOM05D006223 ORTHO05D009080 1.9e-47 193.4 195 55.4
Peaxi162Scf00548g00643 Petunia axillaris HOM05D006223 ORTHO05D009080 9.2e-47 191.0 199 56.8
Prupe.6G221000 Prunus persica HOM05D006223 ORTHO05D009080 1.6e-46 190.3 202 55.9
Hund16399 Selenicereus undatus HOM05D006223 ORTHO05D009080 3.5e-46 189.1 199 54.3
THA.LOC104827599 Tarenaya hassleriana HOM05D006223 ORTHO05D009080 3.5e-46 189.1 195 50.8
MD15G1297100 Malus domestica HOM05D006223 ORTHO05D009080 7.8e-46 188.0 152 67.8
ClCG02G012630 Citrullus lanatus HOM05D003401 ORTHO05D003906 1.0e-45 187.6 182 58.8
ECA246G3554 Erigeron canadensis HOM05D006223 ORTHO05D009080 1.0e-45 187.6 194 56.7
FAN28G1261 Fragaria x ananassa HOM05D006223 ORTHO05D009080 2.3e-45 186.4 197 56.9
arahy.Tifrunner.gnm1.ann1.BP3FRD Arachis hypogaea HOM05D006223 ORTHO05D009080 1.9e-44 183.3 203 56.7
FAN19G0818 Fragaria x ananassa HOM05D006223 ORTHO05D009080 1.9e-44 183.3 196 56.1
FAN26G2055 Fragaria x ananassa HOM05D006223 ORTHO05D009080 1.9e-44 183.3 197 56.3
FvH4_1g17670 Fragaria vesca HOM05D006223 ORTHO05D009080 2.5e-44 183.0 197 55.8
RcHm_v2.0_Chr2g0108001 Rosa chinensis HOM05D006223 ORTHO05D009080 2.1e-43 179.9 194 55.7
Hma1.2p1_0852F.1_g228470 Hydrangea macrophylla HOM05D006223 ORTHO05D009080 1.8e-42 176.8 115 78.3
AL5G29900 Arabidopsis lyrata HOM05D006223 ORTHO05D009080 2.0e-41 173.3 195 48.2
AT3G49890 Arabidopsis thaliana HOM05D006223 ORTHO05D009080 9.9e-41 171.0 195 46.7
arahy.Tifrunner.gnm1.ann1.83HTFG Arachis hypogaea HOM05D006223 ORTHO05D009080 2.2e-40 169.9 237 49.4
Aa31LG4G18340 Aethionema arabicum HOM05D006223 ORTHO05D009080 1.9e-39 166.8 196 45.9
CSS0032370 Camellia sinensis var. sinensis HOM05D006223 ORTHO05D009080 2.4e-39 166.4 91 97.8
SGA_v2.0_scaffold72G24074 Striga asiatica HOM05D006223 ORTHO05D009080 3.2e-39 166.0 156 57.1
Zm00001eb400790 Zea mays HOM05D006223 ORTHO05D009080 7.1e-39 164.9 202 49.0
Ah.03g140550 Amaranthus hybridus HOM05D006223 ORTHO05D009080 1.2e-38 164.1 194 49.5
CDE06G0771 Ceratophyllum demersum HOM05D006223 ORTHO05D009080 1.6e-38 163.7 190 49.5
Sp5g12220 Schrenkiella parvula HOM05D006223 ORTHO05D009080 5.1e-37 158.7 196 43.9
Thhalv10010709m.g Eutrema salsugineum HOM05D006223 ORTHO05D009080 6.6e-37 158.3 196 43.9
HPP92_024913 Vanilla planifolia HOM05D006223 ORTHO05D009080 2.5e-36 156.4 206 47.6
A03p47580 Brassica napus HOM05D006223 ORTHO05D009080 2.1e-35 153.3 193 44.6
BraA03t13871Z Brassica rapa HOM05D006223 ORTHO05D009080 6.2e-35 151.8 197 43.7
CARHR158970 Cardamine hirsuta HOM05D006223 ORTHO05D009080 6.2e-35 151.8 195 42.6
ATR1153G042 Amborella trichopoda HOM05D006223 ORTHO05D009080 1.2e-33 147.5 202 44.6
Carub.0005s1625 Capsella rubella HOM05D006223 ORTHO05D009080 2.0e-33 146.7 195 40.0
Os03g0201200 Oryza sativa ssp. japonica HOM05D006223 ORTHO05D009080 9.9e-33 144.4 201 44.8
C07p45560 Brassica napus HOM05D006223 ORTHO05D009080 1.7e-32 143.7 154 47.4
BolC7t45077H Brassica oleracea HOM05D006223 ORTHO05D009080 1.7e-32 143.7 154 47.4
EL10Ac6g15621 Beta vulgaris HOM05D006223 ORTHO05D009080 2.7e-30 136.3 198 46.0
SEGI_10369 Sequoiadendron giganteum HOM05D006223 ORTHO05D009080 2.0e-25 120.2 171 46.2
Sc16g0002890 Simmondsia chinensis HOM05D006223 ORTHO05D009080 3.8e-24 115.9 135 51.1
SHI12778 Sapria himalayana HOM05D006223 ORTHO05D009080 2.1e-19 100.1 178 40.4
AagrBONN_evm.TU.Sc2ySwM_228.3102 Anthoceros agrestis HOM05D004796 ORTHO05D006527 1.2e-17 94.4 211 36.5
CSS0023916 Camellia sinensis var. sinensis HOM05D006223 ORTHO05D009080 2.0e-17 93.6 91 61.5
FAN23G0832 Fragaria x ananassa HOM05D006223 ORTHO05D009080 5.8e-17 92.0 131 43.5
COL.COLO4_11574 Corchorus olitorius HOM05D006223 ORTHO05D009080 7.6e-17 91.7 120 40.8
C08p24920 Brassica napus HOM05D006223 ORTHO05D009080 3.2e-15 86.3 158 31.0
BolC8t50110H Brassica oleracea HOM05D006223 ORTHO05D009080 5.5e-15 85.5 159 31.4
unitig_21.g20422 Utricularia gibba HOM05D005082 ORTHO05D006474 3.5e-14 82.8 179 38.0
HPP92_024909 Vanilla planifolia HOM05D006223 ORTHO05D009080 3.9e-13 79.3 79 57.0
Pp3c5_6560 Physcomitrium patens HOM05D006223 ORTHO05D009080 1.1e-12 77.8 208 34.6
BcaB05g23172 Brassica carinata HOM05D006223 ORTHO05D009080 9.6e-12 74.7 131 34.4
SMO145G0277 Selaginella moellendorffii HOM05D034328 ORTHO05D009080 4.6e-06 55.8 180 30.6


User provided reference genes

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