Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009720 Camellia sinensis var. sinensis HOM05D001905 ORTHO05D001820 6.3e-63 243.8 114 100.0
Lj7C76T9 Lonicera japonica HOM05D001905 ORTHO05D001820 6.9e-09 64.3 42 71.4
Potri.002G123100 Populus trichocarpa HOM05D001905 ORTHO05D001820 1.2e-08 63.5 46 69.6
Eucgr.F00182 Eucalyptus grandis HOM05D001905 ORTHO05D001820 1.5e-08 63.2 42 66.7
Hma1.2p1_0360F.1_g135910 Hydrangea macrophylla HOM05D001905 ORTHO05D001820 1.5e-08 63.2 42 71.4
QL02p003969 Quercus lobata HOM05D001905 ORTHO05D001820 2.0e-08 62.8 42 71.4
TWI36G1711 Tripterygium wilfordii HOM05D001905 ORTHO05D001820 2.0e-08 62.8 42 69.0
TAR376G0028 Trochodendron aralioides HOM05D001905 ORTHO05D001820 2.0e-08 62.8 42 69.0
TAR381G1473 Trochodendron aralioides HOM05D001905 ORTHO05D001820 2.0e-08 62.8 43 69.8
DCAR_025753 Daucus carota HOM05D001905 ORTHO05D001820 2.6e-08 62.4 42 69.0
Dinv39270 Davidia involucrata HOM05D001905 ORTHO05D001820 2.6e-08 62.4 42 69.0
Prupe.1G430700 Prunus persica HOM05D001905 ORTHO05D001820 2.6e-08 62.4 42 69.0
TWI56G0531 Tripterygium wilfordii HOM05D001905 ORTHO05D001820 2.6e-08 62.4 42 69.0
Ciclev10000831m.g Citrus clementina HOM05D001905 ORTHO05D001820 3.4e-08 62.0 42 66.7
Dinv26860 Davidia involucrata HOM05D001905 ORTHO05D001820 3.4e-08 62.0 42 69.0
Manes.05G177200 Manihot esculenta HOM05D001905 ORTHO05D001820 3.4e-08 62.0 42 69.0
Manes.18G041400 Manihot esculenta HOM05D001905 ORTHO05D001820 3.4e-08 62.0 42 69.0
TWI36G1279 Tripterygium wilfordii HOM05D001905 ORTHO05D001820 3.4e-08 62.0 42 66.7
MD08G1093600 Malus domestica HOM05D001905 ORTHO05D001820 4.5e-08 61.6 42 66.7
Potri.014G023500 Populus trichocarpa HOM05D001905 ORTHO05D001820 4.5e-08 61.6 42 66.7
COL.COLO4_10116 Corchorus olitorius HOM05D001905 ORTHO05D001820 5.8e-08 61.2 42 66.7
FvH4_2g33740 Fragaria vesca HOM05D001905 ORTHO05D001820 5.8e-08 61.2 42 66.7
FAN20G2298 Fragaria x ananassa HOM05D001905 ORTHO05D001820 5.8e-08 61.2 42 66.7
FAN24G0672 Fragaria x ananassa HOM05D001905 ORTHO05D001820 5.8e-08 61.2 42 66.7
FAN27G0564 Fragaria x ananassa HOM05D001905 ORTHO05D001820 5.8e-08 61.2 42 66.7
Atru.chr13.750 Acer truncatum HOM05D001905 ORTHO05D001820 7.6e-08 60.8 42 69.0
Aqoxy5G01162 Aquilegia oxysepala HOM05D001905 ORTHO05D001820 9.9e-08 60.5 44 63.6
Cpa.g.sc21.154 Carica papaya HOM05D001905 ORTHO05D001820 9.9e-08 60.5 42 69.0
Cfa018056 Carpinus fangiana HOM05D001905 ORTHO05D001820 9.9e-08 60.5 42 66.7
Haze_18070 Corylus avellana HOM05D001905 ORTHO05D001820 9.9e-08 60.5 42 66.7
Lsat_1_v5_gn_4_164280 Lactuca sativa HOM05D001905 ORTHO05D001820 9.9e-08 60.5 42 69.0
Lsat_1_v5_gn_4_164300 Lactuca sativa HOM05D001905 ORTHO05D001820 9.9e-08 60.5 42 69.0
PSO541G5467 Papaver somniferum HOM05D001905 ORTHO05D001820 9.9e-08 60.5 42 66.7
PSO675G2561 Papaver somniferum HOM05D001905 ORTHO05D001820 9.9e-08 60.5 42 66.7
RcHm_v2.0_Chr6g0308811 Rosa chinensis HOM05D001905 ORTHO05D001820 9.9e-08 60.5 42 66.7
Sabra14G0016100 Salix brachista HOM05D001905 ORTHO05D001820 9.9e-08 60.5 42 64.3
Gohir.A01G121800 Gossypium hirsutum HOM05D001905 ORTHO05D001820 1.3e-07 60.1 42 64.3
Gohir.D01G109200 Gossypium hirsutum HOM05D001905 ORTHO05D001820 1.3e-07 60.1 42 64.3
Gorai.002G133700 Gossypium raimondii HOM05D001905 ORTHO05D001820 1.3e-07 60.1 42 64.3
Gorai.010G022900 Gossypium raimondii HOM05D001905 ORTHO05D001820 1.3e-07 60.1 42 66.7
Nitab4.5_0001039g0040 Nicotiana tabacum HOM05D001905 ORTHO05D001820 1.3e-07 60.1 42 66.7
Sabra02G0096400 Salix brachista HOM05D001905 ORTHO05D001820 1.3e-07 60.1 46 65.2
Gohir.A05G205700 Gossypium hirsutum HOM05D001905 ORTHO05D001820 1.7e-07 59.7 42 64.3
Gohir.A06G021300 Gossypium hirsutum HOM05D001905 ORTHO05D001820 1.7e-07 59.7 42 66.7
Gohir.D06G019072 Gossypium hirsutum HOM05D001905 ORTHO05D001820 1.7e-07 59.7 42 66.7
Gorai.009G215400 Gossypium raimondii HOM05D001905 ORTHO05D001820 1.7e-07 59.7 42 64.3
Actinidia22657 Actinidia chinensis HOM05D001905 ORTHO05D001820 2.2e-07 59.3 42 64.3
Cc10_g04870 Coffea canephora HOM05D001905 ORTHO05D001820 2.2e-07 59.3 42 64.3
FAN15G3106 Fragaria x ananassa HOM05D001905 ORTHO05D001820 2.2e-07 59.3 42 64.3
CiPaw.16G037800 Carya illinoinensis HOM05D001905 ORTHO05D001820 2.9e-07 58.9 42 64.3
Sc03g0001840 Simmondsia chinensis HOM05D001905 ORTHO05D001820 3.8e-07 58.5 51 60.8
Ah.03g145950 Amaranthus hybridus HOM05D001905 ORTHO05D001820 4.9e-07 58.2 46 58.7
CAN.G1812.3 Capsicum annuum HOM05D001905 ORTHO05D001820 4.9e-07 58.2 42 61.9
CiPaw.15G052100 Carya illinoinensis HOM05D001905 ORTHO05D001820 4.9e-07 58.2 42 64.3
Duzib116G0512 Durio zibethinus HOM05D001905 ORTHO05D001820 4.9e-07 58.2 42 61.9
Lsat_1_v5_gn_3_90401 Lactuca sativa HOM05D001905 ORTHO05D001820 4.9e-07 58.2 42 66.7
PGR083G0249 Punica granatum HOM05D001905 ORTHO05D001820 4.9e-07 58.2 42 61.9
Thecc.08G001200 Theobroma cacao HOM05D001905 ORTHO05D001820 4.9e-07 58.2 42 64.3
CANSAT25G0258 Cannabis sativa HOM05D001905 ORTHO05D001820 6.4e-07 57.8 42 64.3
CAN.G370.17 Capsicum annuum HOM05D001905 ORTHO05D001820 6.4e-07 57.8 41 65.9
AUR62003931 Chenopodium quinoa HOM05D001905 ORTHO05D001820 6.4e-07 57.8 44 61.4
AUR62038247 Chenopodium quinoa HOM05D001905 ORTHO05D001820 6.4e-07 57.8 44 61.4
Duzib093G0359 Durio zibethinus HOM05D001905 ORTHO05D001820 6.4e-07 57.8 42 64.3
Migut.H00400 Erythranthe guttata HOM05D001905 ORTHO05D001820 6.4e-07 57.8 42 64.3
Lsat_1_v5_gn_4_127741 Lactuca sativa HOM05D001905 ORTHO05D001820 6.4e-07 57.8 46 58.7
MD15G1077300 Malus domestica HOM05D001905 ORTHO05D001820 6.4e-07 57.8 41 63.4
Nitab4.5_0001373g0070 Nicotiana tabacum HOM05D001905 ORTHO05D001820 6.4e-07 57.8 41 65.9
PGSC0003DMG400024958 Solanum tuberosum HOM05D001905 ORTHO05D001820 6.4e-07 57.8 41 65.9
SGA_v2.0_scaffold143G35793 Striga asiatica HOM05D001905 ORTHO05D001820 6.4e-07 57.8 42 66.7
TAR628G1112 Trochodendron aralioides HOM05D001905 ORTHO05D001820 6.4e-07 57.8 42 66.7
TAR628G1366 Trochodendron aralioides HOM05D001905 ORTHO05D001820 6.4e-07 57.8 42 66.7
EL10Ac6g15697 Beta vulgaris HOM05D001905 ORTHO05D001820 8.4e-07 57.4 44 61.4
Ca_13256_v3 Cicer arietinum L. HOM05D001905 ORTHO05D001820 8.4e-07 57.4 42 64.3
MELO3C016784.2 Cucumis melo HOM05D001905 ORTHO05D001820 8.4e-07 57.4 42 64.3
CsaV3_4G034690 Cucumis sativus L. HOM05D001905 ORTHO05D001820 8.4e-07 57.4 42 64.3
Glyma.17G238700 Glycine max HOM05D001905 ORTHO05D001820 8.4e-07 57.4 42 61.9
Medtr1g018790 Medicago truncatula HOM05D001905 ORTHO05D001820 8.4e-07 57.4 42 64.3
Nitab4.5_0000029g0060 Nicotiana tabacum HOM05D001905 ORTHO05D001820 8.4e-07 57.4 42 59.5
Phvul.001G024700 Phaseolus vulgaris HOM05D001905 ORTHO05D001820 8.4e-07 57.4 42 61.9
Psat6g015040 Pisum sativum HOM05D001905 ORTHO05D001820 8.4e-07 57.4 42 64.3
VMungo0647G1437 Vigna mungo HOM05D001905 ORTHO05D001820 8.4e-07 57.4 42 61.9
ClCG05G020210 Citrullus lanatus HOM05D001905 ORTHO05D001820 1.1e-06 57.0 42 61.9
Nitab4.5_0000197g0010 Nicotiana tabacum HOM05D001905 ORTHO05D001820 1.1e-06 57.0 42 64.3
Sed0019625 Sechium edule HOM05D001905 ORTHO05D001820 1.1e-06 57.0 42 64.3
Nitab4.5_0004339g0050 Nicotiana tabacum HOM05D001905 ORTHO05D001820 1.4e-06 56.6 42 59.5
Solyc02g092990.1 Solanum lycopersicum HOM05D001905 ORTHO05D001820 1.4e-06 56.6 41 63.4
MSTRG.2859 Avicennia marina HOM05D001905 ORTHO05D001820 1.9e-06 56.2 42 66.7
Glyma.14G086000 Glycine max HOM05D001905 ORTHO05D001820 1.9e-06 56.2 42 59.5
Peaxi162Scf00549g00043 Petunia axillaris HOM05D001905 ORTHO05D001820 1.9e-06 56.2 51 51.0
Rhsim06G0054900 Rhododendron simsii HOM05D001905 ORTHO05D001820 1.9e-06 56.2 42 59.5
Solyc04g078490.1 Solanum lycopersicum HOM05D001905 ORTHO05D001820 1.9e-06 56.2 42 59.5
Sopen04g032090 Solanum pennellii HOM05D001905 ORTHO05D001820 1.9e-06 56.2 42 59.5
PGSC0003DMG400041336 Solanum tuberosum HOM05D001905 ORTHO05D001820 1.9e-06 56.2 42 59.5
Aqoxy6G02895 Aquilegia oxysepala HOM05D001905 ORTHO05D001820 2.4e-06 55.8 42 61.9
MSTRG.2855 Avicennia marina HOM05D001905 ORTHO05D001820 2.4e-06 55.8 42 66.7
Nitab4.5_0010118g0010 Nicotiana tabacum HOM05D001905 ORTHO05D001820 2.4e-06 55.8 42 57.1
Peaxi162Scf00963g00029 Petunia axillaris HOM05D001905 ORTHO05D001820 2.4e-06 55.8 42 57.1
vmacro21487 Vaccinium macrocarpon HOM05D001905 ORTHO05D001820 3.2e-06 55.5 42 64.3
Gohir.D05G209000 Gossypium hirsutum HOM05D001905 ORTHO05D001820 4.2e-06 55.1 43 62.8
Sed0015116 Sechium edule HOM05D001905 ORTHO05D001820 4.2e-06 55.1 42 59.5
HanXRQChr09g0267111 Helianthus annuus HOM05D001905 ORTHO05D001820 5.5e-06 54.7 42 59.5
Lalb_Chr14g0368481 Lupinus albus HOM05D001905 ORTHO05D001820 5.5e-06 54.7 53 50.9
PGSC0003DMG400003351 Solanum tuberosum HOM05D001905 ORTHO05D001820 5.5e-06 54.7 42 57.1
SGA_v2.0_scaffold70G23572 Striga asiatica HOM05D001905 ORTHO05D001820 5.5e-06 54.7 42 61.9
Actinidia38080 Actinidia chinensis HOM05D001905 ORTHO05D001820 7.1e-06 54.3 42 57.1
MSTRG.15371 Avicennia marina HOM05D001905 ORTHO05D001820 7.1e-06 54.3 41 65.9
Haze_15355 Corylus avellana HOM05D001905 ORTHO05D001820 7.1e-06 54.3 42 59.5
HanXRQChr16g0508881 Helianthus annuus HOM05D001905 ORTHO05D001820 7.1e-06 54.3 42 57.1
Lj4C64T9 Lonicera japonica HOM05D001905 ORTHO05D001820 7.1e-06 54.3 42 61.9
Lalb_Chr22g0354901 Lupinus albus HOM05D001905 ORTHO05D001820 7.1e-06 54.3 41 63.4
Cc07_g06400 Coffea canephora HOM05D001905 ORTHO05D001820 9.3e-06 53.9 42 61.9
THA.LOC104825763 Tarenaya hassleriana HOM05D001905 ORTHO05D001820 9.3e-06 53.9 41 63.4


User provided reference genes

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