Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009679 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 3.8e-194 681.4 363 100.0
CSS0049071 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 1.5e-134 483.4 402 71.1
CSS0027559 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 3.5e-99 365.9 359 65.5
Actinidia00336 Actinidia chinensis HOM05D004882 ORTHO05D005551 9.9e-86 321.2 385 56.4
Actinidia02424 Actinidia chinensis HOM05D004882 ORTHO05D005551 6.4e-85 318.5 383 55.4
Rhsim11G0146400 Rhododendron simsii HOM05D004882 ORTHO05D000089 1.0e-69 268.1 378 47.6
CSS0002606 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 2.4e-55 220.3 364 48.4
CSS0014319 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 6.5e-53 212.2 363 47.1
CSS0001570 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 1.1e-49 201.4 164 75.0
Hma1.2p1_2001F.1_g310650 Hydrangea macrophylla HOM05D004882 ORTHO05D005551 1.0e-42 178.3 363 40.5
Cfa004757 Carpinus fangiana HOM05D004882 ORTHO05D005551 3.0e-42 176.8 390 39.0
Lj5C223T12 Lonicera japonica HOM05D004882 ORTHO05D005551 1.1e-39 168.3 375 39.5
Dinv16049 Davidia involucrata HOM05D004882 ORTHO05D005551 5.0e-37 159.5 213 50.7
Haze_10351 Corylus avellana HOM05D004882 ORTHO05D005551 6.8e-34 149.1 389 36.8
Haze_10355 Corylus avellana HOM05D004882 ORTHO05D005551 1.2e-33 148.3 389 36.5
Potri.001G287800 Populus trichocarpa HOM05D004882 ORTHO05D005551 1.3e-32 144.8 373 35.7
QL11p027705 Quercus lobata HOM05D004882 ORTHO05D005551 6.3e-32 142.5 393 35.6
TAR376G0385 Trochodendron aralioides HOM05D004882 ORTHO05D005551 8.3e-32 142.1 401 36.2
CiPaw.05G024800 Carya illinoinensis HOM05D004882 ORTHO05D005551 2.3e-29 134.0 283 36.0
Potri.009G081900 Populus trichocarpa HOM05D004882 ORTHO05D005551 7.2e-28 129.0 382 34.8
TAR628G0407 Trochodendron aralioides HOM05D004882 ORTHO05D005551 9.5e-28 128.6 375 36.0
Manes.10G090200 Manihot esculenta HOM05D004882 ORTHO05D005551 2.1e-27 127.5 363 33.3
FAN15G2336 Fragaria x ananassa HOM05D004882 ORTHO05D005551 2.8e-27 127.1 389 36.0
Thecc.02G034500 Theobroma cacao HOM05D004882 ORTHO05D005551 3.6e-27 126.7 368 33.7
MD05G1112300 Malus domestica HOM05D004882 ORTHO05D005551 1.8e-26 124.4 388 34.5
FAN27G0728 Fragaria x ananassa HOM05D004882 ORTHO05D005551 2.3e-26 124.0 388 35.3
Nn6g34538 Nelumbo nucifera HOM05D004882 ORTHO05D005551 3.0e-26 123.6 374 35.6
RcHm_v2.0_Chr6g0246371 Rosa chinensis HOM05D004882 ORTHO05D005551 4.0e-26 123.2 393 33.3
FAN20G2896 Fragaria x ananassa HOM05D004882 ORTHO05D005551 6.8e-26 122.5 389 35.0
FvH4_2g02560 Fragaria vesca HOM05D004882 ORTHO05D005551 1.2e-25 121.7 381 35.4
FAN24G2723 Fragaria x ananassa HOM05D004882 ORTHO05D005551 1.2e-25 121.7 381 35.4
Cpa.g.sc20.70 Carica papaya HOM05D004882 ORTHO05D005551 2.2e-24 117.5 398 31.9
Manes.07G049500 Manihot esculenta HOM05D004882 ORTHO05D005551 2.2e-24 117.5 368 33.7
CANSAT25G1117 Cannabis sativa HOM05D004882 ORTHO05D005551 1.8e-23 114.4 379 33.0
Sabra09G0063500 Salix brachista HOM05D004882 ORTHO05D005551 8.6e-21 105.5 385 32.2
Duzib248G0647 Durio zibethinus HOM05D004882 ORTHO05D005551 2.5e-20 104.0 363 34.7
vmacro01916 Vaccinium macrocarpon HOM05D004882 ORTHO05D005551 3.3e-20 103.6 142 50.0
Oeu008559.3 Olea europaea HOM05D004882 ORTHO05D005551 9.5e-20 102.1 392 32.4
Sabra16G0180100 Salix brachista HOM05D004882 ORTHO05D005551 1.0e-18 98.6 365 29.9
Eucgr.I02514 Eucalyptus grandis HOM05D004882 ORTHO05D005551 1.8e-18 97.8 355 34.9
Nitab4.5_0005609g0020 Nicotiana tabacum HOM05D004882 ORTHO05D005551 1.8e-18 97.8 354 33.1
Duzib132G0818 Durio zibethinus HOM05D004882 ORTHO05D005551 2.3e-18 97.4 336 33.9
Nitab4.5_0001477g0110 Nicotiana tabacum HOM05D004882 ORTHO05D005551 5.2e-18 96.3 354 31.9
GSVIVG01036969001 Vitis vinifera HOM05D004882 ORTHO05D005551 1.2e-17 95.1 251 33.5
MBI16_g35720_MAGBIO Magnolia biondii HOM05D004882 ORTHO05D005551 1.5e-17 94.7 362 31.5
TWI59G1177 Tripterygium wilfordii HOM05D004882 ORTHO05D005551 5.8e-17 92.8 360 30.3
Solyc01g106540.4 Solanum lycopersicum HOM05D004882 ORTHO05D005551 7.5e-17 92.4 359 31.5
Sopen01g048900 Solanum pennellii HOM05D004882 ORTHO05D005551 7.5e-17 92.4 359 31.5
Aqoxy5G00818 Aquilegia oxysepala HOM05D004882 ORTHO05D005551 1.3e-16 91.7 373 30.6
PGSC0003DMG400005123 Solanum tuberosum HOM05D004882 ORTHO05D005551 1.7e-16 91.3 361 32.1
MD10G1114900 Malus domestica HOM05D004882 ORTHO05D005551 2.9e-16 90.5 381 32.5
PSO170G1497 Papaver somniferum HOM05D004882 ORTHO05D005551 2.9e-16 90.5 362 31.5
MSTRG.16657 Avicennia marina HOM05D004882 ORTHO05D005551 1.1e-15 88.6 359 31.2
Cc02_g20370 Coffea canephora HOM05D004882 ORTHO05D005551 9.2e-15 85.5 342 31.9
Peaxi162Scf00016g03342 Petunia axillaris HOM05D004882 ORTHO05D005551 9.2e-15 85.5 358 29.9
PSO017G3844 Papaver somniferum HOM05D004882 ORTHO05D005551 4.6e-14 83.2 353 30.6
PGR142G0772 Punica granatum HOM05D004882 ORTHO05D005551 7.8e-14 82.4 275 32.4
Lj6g0001174 Lotus japonicus HOM05D004882 ORTHO05D005551 3.0e-13 80.5 328 30.5
Lalb_Chr18g0060201 Lupinus albus HOM05D004882 ORTHO05D005551 5.0e-13 79.7 238 31.5
Glyma.15G061700 Glycine max HOM05D004882 ORTHO05D005551 1.4e-10 71.6 369 27.4
Medtr2g010490 Medicago truncatula HOM05D004882 ORTHO05D005551 2.3e-10 70.9 347 30.0
ECA234G1559 Erigeron canadensis HOM05D004882 ORTHO05D005551 3.4e-09 67.0 363 29.2
HanXRQChr05g0136851 Helianthus annuus HOM05D004882 ORTHO05D005551 3.4e-09 67.0 346 28.9
Migut.B00500 Erythranthe guttata HOM05D004882 ORTHO05D005551 1.7e-08 64.7 302 31.1
TPR.G32640 Trifolium pratense HOM05D004882 ORTHO05D005551 2.2e-08 64.3 298 27.9
Gohir.A03G212800 Gossypium hirsutum HOM05D004882 ORTHO05D005551 3.7e-08 63.5 284 30.3
Ca_00196_v3 Cicer arietinum L. HOM05D004882 ORTHO05D005551 6.4e-08 62.8 325 28.9
Atru.chr5.2156 Acer truncatum HOM05D004882 ORTHO05D005551 8.3e-08 62.4 237 32.5
arahy.Tifrunner.gnm1.ann1.6ERH6H Arachis hypogaea HOM05D004882 ORTHO05D005551 1.9e-07 61.2 334 28.7
arahy.Tifrunner.gnm1.ann1.189H81 Arachis hypogaea HOM05D004882 ORTHO05D005551 4.1e-07 60.1 330 28.2
COL.COLO4_17832 Corchorus olitorius HOM05D004882 ORTHO05D005551 2.1e-06 57.8 195 33.3
Phvul.006G198000 Phaseolus vulgaris HOM05D004882 ORTHO05D005551 4.6e-06 56.6 235 28.9
Gorai.005G262300 Gossypium raimondii HOM05D004882 ORTHO05D005551 7.8e-06 55.8 346 28.0


User provided reference genes

Program Settings