Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009675 Camellia sinensis var. sinensis HOM05D003976 ORTHO05D004711 0.0e+00 2083.5 1075 100.0
Dinv31232 Davidia involucrata HOM05D003976 ORTHO05D004711 0.0e+00 1824.3 1080 87.5
GSVIVG01016219001 Vitis vinifera HOM05D003976 ORTHO05D004711 0.0e+00 1756.1 1088 83.3
TWI63G1397 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 0.0e+00 1731.1 1079 82.8
Prupe.2G208700 Prunus persica HOM05D003976 ORTHO05D004711 0.0e+00 1729.1 1076 82.8
TAR633G0511 Trochodendron aralioides HOM05D003976 ORTHO05D004711 0.0e+00 1722.6 1079 83.0
RcHm_v2.0_Chr1g0362571 Rosa chinensis HOM05D003976 ORTHO05D004711 0.0e+00 1716.4 1076 82.2
Oeu007408.1 Olea europaea HOM05D003976 ORTHO05D004711 0.0e+00 1714.5 1074 82.3
Cfa001691 Carpinus fangiana HOM05D003976 ORTHO05D004711 0.0e+00 1712.2 1077 82.2
Aqoxy1G01141 Aquilegia oxysepala HOM05D003976 ORTHO05D004711 0.0e+00 1709.1 1080 81.1
Nn4g25176 Nelumbo nucifera HOM05D003976 ORTHO05D004711 0.0e+00 1705.6 1079 81.5
TWI15G0187 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 0.0e+00 1704.9 1079 82.0
PGR044G0607 Punica granatum HOM05D003976 ORTHO05D004711 0.0e+00 1697.6 1075 80.8
CANSAT56G1655 Cannabis sativa HOM05D003976 ORTHO05D004711 0.0e+00 1695.6 1079 80.9
Thecc.10G083800 Theobroma cacao HOM05D003976 ORTHO05D004711 0.0e+00 1691.8 1074 80.7
MD01G1103100 Malus domestica HOM05D003976 ORTHO05D004711 0.0e+00 1690.2 1076 81.6
FvH4_7g18760 Fragaria vesca HOM05D003976 ORTHO05D004711 0.0e+00 1689.9 1076 80.8
Sopen11g004150 Solanum pennellii HOM05D003976 ORTHO05D004711 0.0e+00 1684.1 1077 81.2
Duzib114G0598 Durio zibethinus HOM05D003976 ORTHO05D004711 0.0e+00 1682.5 1076 80.5
CiPaw.01G268500 Carya illinoinensis HOM05D003976 ORTHO05D004711 0.0e+00 1678.7 1078 80.8
Solyc11g008340.3 Solanum lycopersicum HOM05D003976 ORTHO05D004711 0.0e+00 1676.4 1077 81.0
Migut.F01955 Erythranthe guttata HOM05D003976 ORTHO05D004711 0.0e+00 1672.5 1080 79.9
Manes.01G054600 Manihot esculenta HOM05D003976 ORTHO05D004711 0.0e+00 1667.5 1078 80.1
FAN03G2922 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1664.4 1076 79.9
Glyma.10G207900 Glycine max HOM05D003976 ORTHO05D004711 0.0e+00 1659.0 1076 80.0
Lalb_Chr06g0170321 Lupinus albus HOM05D003976 ORTHO05D004711 0.0e+00 1655.6 1074 79.3
FAN06G0006 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1654.8 1076 79.6
Potri.010G227100 Populus trichocarpa HOM05D003976 ORTHO05D004711 0.0e+00 1654.8 1079 79.9
Lj5g0000763 Lotus japonicus HOM05D003976 ORTHO05D004711 0.0e+00 1653.3 1076 79.6
Glyma.20G182800 Glycine max HOM05D003976 ORTHO05D004711 0.0e+00 1643.2 1088 78.8
MD07G1169800 Malus domestica HOM05D003976 ORTHO05D004711 0.0e+00 1639.0 1031 82.0
Potri.008G035300 Populus trichocarpa HOM05D003976 ORTHO05D004711 0.0e+00 1634.4 1079 79.3
Nitab4.5_0001450g0090 Nicotiana tabacum HOM05D003976 ORTHO05D004711 0.0e+00 1632.5 1160 75.7
Atru.chr12.845 Acer truncatum HOM05D003976 ORTHO05D004711 0.0e+00 1632.1 1047 80.2
MSTRG.27486 Avicennia marina HOM05D003976 ORTHO05D004711 0.0e+00 1629.4 1079 77.8
PSO063G6915 Papaver somniferum HOM05D003976 ORTHO05D004711 0.0e+00 1629.0 1079 78.4
Lj2C20G12 Lonicera japonica HOM05D003976 ORTHO05D004711 0.0e+00 1626.3 1093 78.0
Ca_00795_v3 Cicer arietinum L. HOM05D003976 ORTHO05D004711 0.0e+00 1622.4 1076 78.5
Phvul.007G098800 Phaseolus vulgaris HOM05D003976 ORTHO05D004711 0.0e+00 1618.6 1073 78.8
PSO339G0981 Papaver somniferum HOM05D003976 ORTHO05D004711 0.0e+00 1615.5 1079 77.8
Medtr8g104855 Medicago truncatula HOM05D003976 ORTHO05D004711 0.0e+00 1614.0 1082 77.5
Sed0018764 Sechium edule HOM05D003976 ORTHO05D004711 0.0e+00 1613.6 1079 76.9
Nitab4.5_0001659g0180 Nicotiana tabacum HOM05D003976 ORTHO05D004711 0.0e+00 1598.2 1099 77.5
VMungo0251G3371 Vigna mungo HOM05D003976 ORTHO05D004711 0.0e+00 1597.0 1076 77.6
SalBow4G0398 Salvia bowleyana HOM05D003976 ORTHO05D004711 0.0e+00 1595.9 1098 76.8
Medtr5g017640 Medicago truncatula HOM05D003976 ORTHO05D004711 0.0e+00 1594.3 1076 76.8
TPR.G32679 Trifolium pratense HOM05D003976 ORTHO05D004711 0.0e+00 1591.6 1074 77.3
Gohir.D04G001800 Gossypium hirsutum HOM05D003976 ORTHO05D004711 0.0e+00 1591.2 1076 76.9
Sc06g0007810 Simmondsia chinensis HOM05D003976 ORTHO05D004711 0.0e+00 1589.3 1080 77.4
Gohir.A05G414300 Gossypium hirsutum HOM05D003976 ORTHO05D004711 0.0e+00 1588.5 1076 76.4
Gorai.012G002900 Gossypium raimondii HOM05D003976 ORTHO05D004711 0.0e+00 1582.8 1076 76.5
CsaV3_6G036710 Cucumis sativus L. HOM05D003976 ORTHO05D004711 0.0e+00 1578.5 1079 75.3
DCAR_019085 Daucus carota HOM05D003976 ORTHO05D004711 0.0e+00 1566.6 1082 76.4
THA.LOC104826898 Tarenaya hassleriana HOM05D003976 ORTHO05D004711 0.0e+00 1562.7 1076 75.1
Ciclev10030617m.g Citrus clementina HOM05D003976 ORTHO05D004711 0.0e+00 1527.7 1074 75.7
Sp3g08650 Schrenkiella parvula HOM05D003976 ORTHO05D004711 0.0e+00 1527.7 1076 73.2
Carub.0003s0956 Capsella rubella HOM05D003976 ORTHO05D004711 0.0e+00 1521.5 1076 73.0
AT3G10380 Arabidopsis thaliana HOM05D003976 ORTHO05D004711 0.0e+00 1520.4 1076 73.0
ECA238G0457 Erigeron canadensis HOM05D003976 ORTHO05D004711 0.0e+00 1515.4 1074 74.4
CARHR084860 Cardamine hirsuta HOM05D003976 ORTHO05D004711 0.0e+00 1511.5 1076 72.5
Nn3g18724 Nelumbo nucifera HOM05D003976 ORTHO05D004711 0.0e+00 1506.1 1077 73.8
Oeu033874.1 Olea europaea HOM05D003976 ORTHO05D004711 0.0e+00 1505.0 947 82.3
C05p57780 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1501.1 1092 71.9
BolC5t34435H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1500.7 1092 71.9
MBI18_g27471_MAGBIO Magnolia biondii HOM05D003976 ORTHO05D004711 0.0e+00 1499.2 1002 77.8
AL3G21710 Arabidopsis lyrata HOM05D003976 ORTHO05D004711 0.0e+00 1497.3 1076 71.9
A05p38770 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1496.1 1077 72.3
MELO3C019825.2 Cucumis melo HOM05D003976 ORTHO05D004711 0.0e+00 1495.3 1095 71.6
Thhalv10019960m.g Eutrema salsugineum HOM05D003976 ORTHO05D004711 0.0e+00 1490.7 1081 71.5
BolC1t05404H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1483.8 1111 70.1
HanXRQChr14g0456581 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1483.8 1073 72.7
HanXRQChr05g0161261 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1479.9 1073 72.7
C03p44100 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1479.5 1096 70.3
BraA01t04258Z Brassica rapa HOM05D003976 ORTHO05D004711 0.0e+00 1479.5 1111 69.4
HanXRQChr14g0455711 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1472.2 1074 72.3
Haze_16845 Corylus avellana HOM05D003976 ORTHO05D004711 0.0e+00 1470.7 1153 70.4
FAN01G1125 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1470.7 1074 73.5
Sabra10G0175200 Salix brachista HOM05D003976 ORTHO05D004711 0.0e+00 1469.9 1180 68.9
BcaB04g21214 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1468.4 1077 70.5
A01p41880 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1463.4 1064 71.2
Sabra08G0023600 Salix brachista HOM05D003976 ORTHO05D004711 0.0e+00 1457.2 1142 70.1
Psat7g009400 Pisum sativum HOM05D003976 ORTHO05D004711 0.0e+00 1452.6 992 76.1
BolC3t16685H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1448.7 1096 69.2
FAN06G1302 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1442.9 1106 70.3
BcaC09g48100 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1442.6 1062 70.7
A03p36500 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1442.2 1096 69.1
AUR62023345 Chenopodium quinoa HOM05D003976 ORTHO05D004711 0.0e+00 1440.6 1093 70.9
BcaC05g29471 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1440.2 1075 70.2
AUR62013811 Chenopodium quinoa HOM05D003976 ORTHO05D004711 0.0e+00 1437.6 1116 69.8
BraA03t12817Z Brassica rapa HOM05D003976 ORTHO05D004711 0.0e+00 1422.1 1096 68.5
HPP92_022853 Vanilla planifolia HOM05D003976 ORTHO05D004711 0.0e+00 1406.3 1105 67.9
Aa31LG3G2960 Aethionema arabicum HOM05D003976 ORTHO05D004711 0.0e+00 1404.0 1081 68.5
ClCG08G007720 Citrullus lanatus HOM05D003976 ORTHO05D004711 0.0e+00 1390.9 1045 70.4
Lsat_1_v5_gn_2_113061 Lactuca sativa HOM05D003976 ORTHO05D004711 0.0e+00 1372.8 1083 68.7
EL10Ac1g00696 Beta vulgaris HOM05D003976 ORTHO05D004711 0.0e+00 1370.5 1180 66.2
FAN10G1353 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1369.8 1062 69.6
CDE10G1014 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 0.0e+00 1355.5 1025 70.4
Os08g0318500 Oryza sativa ssp. japonica HOM05D003976 ORTHO05D004711 0.0e+00 1354.3 1076 66.0
FAN10G3044 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1347.8 1061 69.1
Zm00001eb330040 Zea mays HOM05D003976 ORTHO05D004711 0.0e+00 1338.9 1076 65.8
SEGI_27589 Sequoiadendron giganteum HOM05D003976 ORTHO05D004711 0.0e+00 1325.5 1072 64.8
SGA_v2.0_scaffold100G29552 Striga asiatica HOM05D003976 ORTHO05D004711 0.0e+00 1317.4 1263 60.2
Eucgr.K02187 Eucalyptus grandis HOM05D003976 ORTHO05D004711 0.0e+00 1272.3 878 76.1
Hma1.2p1_0384F.1_g140840 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 0.0e+00 1272.3 741 88.9
arahy.Tifrunner.gnm1.ann1.9SI57B Arachis hypogaea HOM05D003976 ORTHO05D004711 0.0e+00 1253.4 1069 65.2
unitig_46.g18603 Utricularia gibba HOM05D003976 ORTHO05D004711 0.0e+00 1225.7 1087 62.6
ATR0730G009 Amborella trichopoda HOM05D003976 ORTHO05D004711 0.0e+00 1185.6 907 68.1
Gohir.D10G210600 Gossypium hirsutum HOM05D003976 ORTHO05D004711 0.0e+00 1166.0 916 68.4
Gorai.011G236100 Gossypium raimondii HOM05D003976 ORTHO05D004711 0.0e+00 1080.9 979 62.4
QL08p054317 Quercus lobata HOM05D003976 ORTHO05D004711 2.2e-311 1072.4 743 76.0
Actinidia18607 Actinidia chinensis HOM05D003976 ORTHO05D004711 2.8e-301 1038.9 843 68.7
Mapoly0170s0008 Marchantia polymorpha HOM05D003976 ORTHO05D004711 1.8e-300 1036.2 1083 52.4
Pp3c16_24260 Physcomitrium patens HOM05D003976 ORTHO05D004711 6.4e-298 1027.7 1093 52.1
CiPaw.02G172200 Carya illinoinensis HOM05D003976 ORTHO05D004711 4.2e-281 971.8 632 80.2
Pp3c3_21120 Physcomitrium patens HOM05D003976 ORTHO05D004711 4.6e-272 941.8 1091 49.7
Pp3c12_15420 Physcomitrium patens HOM05D003976 ORTHO05D004711 3.1e-260 902.5 1086 47.4
Gohir.A10G202400 Gossypium hirsutum HOM05D003976 ORTHO05D004711 4.2e-257 892.1 777 64.6
SMO172G0221 Selaginella moellendorffii HOM05D003976 ORTHO05D004711 3.1e-252 875.9 1061 47.1
Peaxi162Scf00145g01215 Petunia axillaris HOM05D003976 ORTHO05D004711 1.6e-232 810.4 515 80.4
COL.COLO4_34215 Corchorus olitorius HOM05D003976 ORTHO05D004711 1.4e-223 780.8 569 73.1
vmacro00386 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 5.7e-222 775.4 841 55.9
Peaxi162Scf00145g01214 Petunia axillaris HOM05D003976 ORTHO05D004711 2.2e-221 773.5 566 74.2
BraA05t22668Z Brassica rapa HOM05D003976 ORTHO05D004711 1.2e-219 767.7 563 71.6
Hund17145 Selenicereus undatus HOM05D003976 ORTHO05D004711 5.0e-218 762.3 708 60.3
arahy.Tifrunner.gnm1.ann1.WBL645 Arachis hypogaea HOM05D003976 ORTHO05D004711 2.3e-207 726.9 592 67.2
COL.COLO4_34214 Corchorus olitorius HOM05D003976 ORTHO05D004711 5.7e-198 695.7 534 70.2
AagrBONN_evm.TU.Sc2ySwM_228.4637 Anthoceros agrestis HOM05D003976 ORTHO05D004711 2.0e-195 687.2 810 48.6
CBR_g30687 Chara braunii HOM05D003976 ORTHO05D004711 2.7e-187 660.2 1236 35.8
BraA05t22669Z Brassica rapa HOM05D003976 ORTHO05D004711 1.6e-176 624.4 430 74.4
CAN.G321.62 Capsicum annuum HOM05D003976 ORTHO05D004711 1.7e-170 604.4 430 74.0
CiPaw.02G172100 Carya illinoinensis HOM05D003976 ORTHO05D004711 2.3e-154 550.8 376 77.4
Rhsim03G0115800 Rhododendron simsii HOM05D003976 ORTHO05D004711 1.6e-144 518.1 359 77.2
Lalb_Chr21g0313681 Lupinus albus HOM05D003976 ORTHO05D004711 8.1e-144 515.8 350 76.3
CDE10G0060 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 5.5e-140 503.1 387 69.0
vmacro00383 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 5.3e-135 486.5 366 72.7
Cpa.g.sc53.134 Carica papaya HOM05D003976 ORTHO05D004711 2.7e-131 474.2 350 72.0
Cpa.g.sc53.132 Carica papaya HOM05D003976 ORTHO05D004711 5.0e-125 453.4 322 74.8
QL08p054329 Quercus lobata HOM05D003976 ORTHO05D004711 1.0e-114 419.1 272 81.2
Lalb_Chr21g0313551 Lupinus albus HOM05D003976 ORTHO05D004711 4.4e-113 413.7 284 75.4
CDE10G0443 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 8.0e-99 366.3 368 56.2
Cc02_g10920 Coffea canephora HOM05D003976 ORTHO05D004711 2.3e-93 348.2 228 78.9
BcaNung07314 Brassica carinata HOM05D003976 ORTHO05D004711 9.5e-76 289.7 178 80.9
VMungo0720G2709 Vigna mungo HOM05D003976 ORTHO05D004711 6.4e-72 276.9 194 78.4
HPP92_026132 Vanilla planifolia HOM05D003976 ORTHO05D004711 4.6e-62 244.2 143 81.8
CDE10G0301 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 1.4e-58 232.6 162 72.8
ATR0730G060 Amborella trichopoda HOM05D003976 ORTHO05D004711 1.8e-58 232.3 139 82.0
PSO478G0690 Papaver somniferum HOM05D003976 ORTHO05D004711 1.5e-52 212.6 131 84.7
vmacro00384 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 4.3e-52 211.1 108 95.4
SEGI_25267 Sequoiadendron giganteum HOM05D003976 ORTHO05D004711 7.6e-49 200.3 139 71.2
Lsat_1_v5_gn_4_4660 Lactuca sativa HOM05D003976 ORTHO05D004711 2.6e-41 175.3 169 59.8
CAN.G796.1 Capsicum annuum HOM05D003976 ORTHO05D004711 1.7e-40 172.6 181 55.2
TPR.G33031 Trifolium pratense HOM05D003976 ORTHO05D004711 3.5e-38 164.9 116 69.8
AL491U10010 Arabidopsis lyrata HOM05D003976 ORTHO05D004711 1.3e-37 162.9 103 77.7
vmacro00385 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 3.9e-37 161.4 96 84.4
Actinidia18608 Actinidia chinensis HOM05D003976 ORTHO05D004711 5.1e-37 161.0 85 88.2
Cc02_g10910 Coffea canephora HOM05D003976 ORTHO05D004711 1.1e-36 159.8 111 76.6
Psat7g009440 Pisum sativum HOM05D003976 ORTHO05D004711 9.9e-33 146.7 86 77.9
Lj6g0023100 Lotus japonicus HOM05D003976 ORTHO05D004711 1.3e-32 146.4 104 72.1
Hma1.2p1_0384F.1_g140740 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 4.9e-32 144.4 87 86.2
Gohir.D10G210566 Gossypium hirsutum HOM05D003976 ORTHO05D004711 3.5e-30 138.3 87 74.7
SHI08886 Sapria himalayana HOM05D000002 ORTHO05D000001 7.9e-30 137.1 92 79.3
Lsat_1_v5_gn_9_29220 Lactuca sativa HOM05D003976 ORTHO05D006024 2.1e-27 129.0 86 76.7
TPR.G28835 Trifolium pratense HOM05D003976 ORTHO05D004711 2.8e-27 128.6 79 74.7
SHI08885 Sapria himalayana HOM05D000002 ORTHO05D000001 6.2e-27 127.5 79 73.4
Cre01.g003050 Chlamydomonas reinhardtii HOM05D003976 ORTHO05D004711 6.9e-26 124.0 203 33.5
Cc06_g17220 Coffea canephora HOM05D003976 ORTHO05D004711 2.7e-22 112.1 81 69.1
Prupe.5G231200 Prunus persica HOM05D003976 ORTHO05D004711 1.1e-20 106.7 100 58.0
Lalb_Chr21g0313561 Lupinus albus HOM05D003976 ORTHO05D004711 9.0e-18 97.1 84 64.3
Lalb_Chr21g0313691 Lupinus albus HOM05D003976 ORTHO05D004711 9.0e-18 97.1 84 64.3
vmacro16680 Vaccinium macrocarpon HOM05D002957 ORTHO05D007941 6.5e-16 90.9 62 72.6
vmacro23142 Vaccinium macrocarpon HOM05D002957 ORTHO05D007941 6.5e-16 90.9 62 72.6
Lsat_1_v5_gn_6_63420 Lactuca sativa HOM05D003976 ORTHO05D004711 1.4e-15 89.7 71 67.6
Hma1.2p1_0384F.1_g140760 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 4.2e-15 88.2 49 87.8
Cc03_g09730 Coffea canephora HOM05D003976 ORTHO05D004711 7.4e-12 77.4 56 71.4
TPR.G6473 Trifolium pratense HOM05D003976 ORTHO05D004711 7.4e-12 77.4 48 81.2
HanXRQChr05g0134171 Helianthus annuus HOM05D003976 ORTHO05D004711 3.1e-10 72.0 52 73.1
Aa31LG6G7350 Aethionema arabicum HOM05D003976 ORTHO05D004711 6.9e-10 70.9 53 67.9
MBI18_g27470_MAGBIO Magnolia biondii HOM05D003976 ORTHO05D004711 1.1e-07 63.5 52 53.8


User provided reference genes

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