Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009674 Camellia sinensis var. sinensis HOM05D006777 ORTHO05D008360 6.4e-34 146.7 69 100.0
CSS0011736 Camellia sinensis var. sinensis HOM05D006777 ORTHO05D008360 2.1e-29 131.7 69 92.8
CSS0000801 Camellia sinensis var. sinensis HOM05D006777 ORTHO05D008360 6.2e-29 130.2 67 92.5
Actinidia35856 Actinidia chinensis HOM05D006777 ORTHO05D008360 1.2e-11 72.8 39 84.6
Lj4g0000567 Lotus japonicus HOM05D006777 ORTHO05D008360 1.2e-11 72.8 38 89.5
Actinidia23410 Actinidia chinensis HOM05D006777 ORTHO05D008360 1.5e-11 72.4 39 84.6
CANSAT78G1417 Cannabis sativa HOM05D006777 ORTHO05D008360 1.5e-11 72.4 39 84.6
CiPaw.02G065600 Carya illinoinensis HOM05D006777 ORTHO05D008360 1.5e-11 72.4 39 84.6
Dinv27219 Davidia involucrata HOM05D006777 ORTHO05D008360 1.5e-11 72.4 39 84.6
Duzib268G0333 Durio zibethinus HOM05D006777 ORTHO05D008360 1.5e-11 72.4 39 84.6
Glyma.08G111500 Glycine max HOM05D006777 ORTHO05D008360 1.5e-11 72.4 39 84.6
Os03g0848300 Oryza sativa ssp. japonica HOM05D006777 ORTHO05D008360 1.5e-11 72.4 39 84.6
Prupe.1G158800 Prunus persica HOM05D006777 ORTHO05D008360 1.5e-11 72.4 39 84.6
Thecc.04G200300 Theobroma cacao HOM05D006777 ORTHO05D008360 1.5e-11 72.4 39 84.6
TAR362G0671 Trochodendron aralioides HOM05D006777 ORTHO05D008360 1.5e-11 72.4 39 84.6
EL10Ac3g05505 Beta vulgaris HOM05D006777 ORTHO05D008360 2.6e-11 71.6 39 82.1
Sc25g0003260 Simmondsia chinensis HOM05D006777 ORTHO05D008360 2.6e-11 71.6 39 82.1
Zm00001eb210820 Zea mays HOM05D006777 ORTHO05D008360 2.6e-11 71.6 38 86.8
Atru.chr4.1633 Acer truncatum HOM05D006777 ORTHO05D008360 3.4e-11 71.2 39 82.1
MSTRG.4231 Avicennia marina HOM05D006777 ORTHO05D008360 3.4e-11 71.2 49 65.3
FvH4_4g13710 Fragaria vesca HOM05D006777 ORTHO05D008360 3.4e-11 71.2 39 82.1
FAN07G2803 Fragaria x ananassa HOM05D006777 ORTHO05D008360 3.4e-11 71.2 39 82.1
FAN12G2838 Fragaria x ananassa HOM05D006777 ORTHO05D008360 3.4e-11 71.2 39 82.1
FAN22G2344 Fragaria x ananassa HOM05D006777 ORTHO05D008360 3.4e-11 71.2 39 82.1
RcHm_v2.0_Chr4g0414361 Rosa chinensis HOM05D006777 ORTHO05D008360 3.4e-11 71.2 39 82.1
RcHm_v2.0_Chr7g0213901 Rosa chinensis HOM05D006777 ORTHO05D008360 3.4e-11 71.2 39 82.1
CDE06G2004 Ceratophyllum demersum HOM05D006777 ORTHO05D008360 4.5e-11 70.9 39 82.1
AUR62016205 Chenopodium quinoa HOM05D006777 ORTHO05D008360 4.5e-11 70.9 38 84.2
AUR62039283 Chenopodium quinoa HOM05D006777 ORTHO05D008360 4.5e-11 70.9 38 84.2
Dinv38213 Davidia involucrata HOM05D006777 ORTHO05D008360 4.5e-11 70.9 39 82.1
Eucgr.H02768 Eucalyptus grandis HOM05D006777 ORTHO05D008360 4.5e-11 70.9 39 82.1
Lalb_Chr07g0186741 Lupinus albus HOM05D006777 ORTHO05D008360 4.5e-11 70.9 38 86.8
HPP92_006972 Vanilla planifolia HOM05D006777 ORTHO05D008360 4.5e-11 70.9 39 82.1
FAN17G1701 Fragaria x ananassa HOM05D006777 ORTHO05D008360 5.8e-11 70.5 38 84.2
Glyma.05G153800 Glycine max HOM05D006777 ORTHO05D008360 5.8e-11 70.5 39 82.1
Gohir.A02G020900 Gossypium hirsutum HOM05D006777 ORTHO05D008360 5.8e-11 70.5 39 82.1
Gohir.D02G024900 Gossypium hirsutum HOM05D006777 ORTHO05D008360 5.8e-11 70.5 39 82.1
Gorai.005G030800 Gossypium raimondii HOM05D006777 ORTHO05D008360 5.8e-11 70.5 39 82.1
Manes.03G146100 Manihot esculenta HOM05D006777 ORTHO05D008360 5.8e-11 70.5 39 82.1
Sed0006533 Sechium edule HOM05D006777 ORTHO05D008360 5.8e-11 70.5 39 82.1
Sed0015167 Sechium edule HOM05D006777 ORTHO05D008360 5.8e-11 70.5 39 82.1
ATR1147G041 Amborella trichopoda HOM05D006777 ORTHO05D008360 7.6e-11 70.1 39 82.1
ClCG06G008050 Citrullus lanatus HOM05D006777 ORTHO05D008360 7.6e-11 70.1 39 82.1
MELO3C019533.2 Cucumis melo HOM05D006777 ORTHO05D008360 7.6e-11 70.1 39 82.1
CsaV3_2G011130 Cucumis sativus L. HOM05D006777 ORTHO05D008360 7.6e-11 70.1 39 82.1
PGR083G1334 Punica granatum HOM05D006777 ORTHO05D008360 7.6e-11 70.1 39 82.1
Solyc12g098430.2 Solanum lycopersicum HOM05D006777 ORTHO05D008360 7.6e-11 70.1 39 82.1
Sopen12g033210 Solanum pennellii HOM05D006777 ORTHO05D008360 7.6e-11 70.1 39 82.1
Migut.G00716 Erythranthe guttata HOM05D006777 ORTHO05D008360 9.9e-11 69.7 39 79.5
SalBow8G2353 Salvia bowleyana HOM05D006777 ORTHO05D008360 9.9e-11 69.7 39 79.5
SalBow8G2632 Salvia bowleyana HOM05D006777 ORTHO05D008360 9.9e-11 69.7 39 79.5
SGA_v2.0_scaffold14G07057 Striga asiatica HOM05D006777 ORTHO05D008360 9.9e-11 69.7 39 79.5
SGA_v2.0_scaffold4G02170 Striga asiatica HOM05D006777 ORTHO05D008360 9.9e-11 69.7 39 79.5
Ciclev10006063m.g Citrus clementina HOM05D006777 ORTHO05D008360 1.3e-10 69.3 39 79.5
Cc03_g11170 Coffea canephora HOM05D006777 ORTHO05D008360 1.3e-10 69.3 38 84.2
Hma1.2p1_0187F.1_g082380 Hydrangea macrophylla HOM05D006777 ORTHO05D008360 1.3e-10 69.3 38 84.2
Hma1.2p1_0187F.1_g082390 Hydrangea macrophylla HOM05D006777 ORTHO05D008360 1.3e-10 69.3 38 84.2
Medtr8g085290 Medicago truncatula HOM05D006777 ORTHO05D008360 1.3e-10 69.3 38 84.2
C04p41680 Brassica napus HOM05D006777 ORTHO05D008360 1.7e-10 68.9 40 80.0
BolC4t25746H Brassica oleracea HOM05D006777 ORTHO05D008360 1.7e-10 68.9 40 80.0
Lsat_1_v5_gn_1_72060 Lactuca sativa HOM05D006777 ORTHO05D008360 1.7e-10 68.9 39 79.5
MD04G1012700 Malus domestica HOM05D006777 ORTHO05D008360 1.7e-10 68.9 39 79.5
Nn1g07943 Nelumbo nucifera HOM05D006777 ORTHO05D008360 2.2e-10 68.6 39 79.5
Peaxi162Scf00652g00116 Petunia axillaris HOM05D006777 ORTHO05D008360 2.2e-10 68.6 39 79.5
TWI53G1099 Tripterygium wilfordii HOM05D006777 ORTHO05D008360 2.2e-10 68.6 39 79.5
BcaC02g09355 Brassica carinata HOM05D006777 ORTHO05D008360 2.9e-10 68.2 39 79.5
TPR.G11902 Trifolium pratense HOM05D006777 ORTHO05D008360 2.9e-10 68.2 39 79.5
AL7G42240 Arabidopsis lyrata HOM05D006777 ORTHO05D008360 3.8e-10 67.8 39 76.9
AT4G14147 Arabidopsis thaliana HOM05D006777 ORTHO05D008360 3.8e-10 67.8 39 76.9
A04p08010 Brassica napus HOM05D006777 ORTHO05D008360 3.8e-10 67.8 40 77.5
BraA04t16489Z Brassica rapa HOM05D006777 ORTHO05D008360 3.8e-10 67.8 40 77.5
Carub.0007s2827 Capsella rubella HOM05D006777 ORTHO05D008360 3.8e-10 67.8 39 76.9
HanXRQChr01g0022451 Helianthus annuus HOM05D006777 ORTHO05D008360 3.8e-10 67.8 39 76.9
PSO017G6923 Papaver somniferum HOM05D006777 ORTHO05D008360 3.8e-10 67.8 39 79.5
PSO063G4325 Papaver somniferum HOM05D006777 ORTHO05D008360 3.8e-10 67.8 39 79.5
GSVIVG01020914001 Vitis vinifera HOM05D006777 ORTHO05D008360 3.8e-10 67.8 38 81.6
Lalb_Chr12g0205521 Lupinus albus HOM05D006777 ORTHO05D008360 4.9e-10 67.4 38 81.6
Mapoly0060s0011 Marchantia polymorpha HOM05D006777 ORTHO05D008360 4.9e-10 67.4 39 79.5
Pp3c3_19880 Physcomitrium patens HOM05D006777 ORTHO05D008360 4.9e-10 67.4 39 79.5
Psat7g074160 Pisum sativum HOM05D006777 ORTHO05D008360 4.9e-10 67.4 38 81.6
BcaB02g08630 Brassica carinata HOM05D006777 ORTHO05D008360 6.4e-10 67.0 39 76.9
Thhalv10026384m.g Eutrema salsugineum HOM05D006777 ORTHO05D008360 6.4e-10 67.0 39 76.9
Sp7g12000 Schrenkiella parvula HOM05D006777 ORTHO05D008360 6.4e-10 67.0 39 76.9
THA.LOC104804809 Tarenaya hassleriana HOM05D006777 ORTHO05D008360 6.4e-10 67.0 39 76.9
THA.LOC104808706 Tarenaya hassleriana HOM05D006777 ORTHO05D008360 6.4e-10 67.0 39 76.9
Aqoxy5G00004 Aquilegia oxysepala HOM05D006777 ORTHO05D008360 8.4e-10 66.6 36 86.1
arahy.Tifrunner.gnm1.ann1.QE6BNJ Arachis hypogaea HOM05D006777 ORTHO05D008360 8.4e-10 66.6 39 76.9
AagrBONN_evm.TU.Sc2ySwM_228.5073 Anthoceros agrestis HOM05D006777 ORTHO05D008360 1.1e-09 66.2 39 76.9
Potri.017G057400 Populus trichocarpa HOM05D006777 ORTHO05D008360 1.1e-09 66.2 39 74.4
Hund11971 Selenicereus undatus HOM05D006777 ORTHO05D008360 1.1e-09 66.2 35 85.7
Aa31LG9G3900 Aethionema arabicum HOM05D006777 ORTHO05D008360 1.4e-09 65.9 39 74.4
CARHR220180 Cardamine hirsuta HOM05D006777 ORTHO05D008360 1.4e-09 65.9 39 74.4
DCAR_026626 Daucus carota HOM05D006777 ORTHO05D008360 1.4e-09 65.9 37 81.1
arahy.Tifrunner.gnm1.ann1.GXV5N1 Arachis hypogaea HOM05D006777 ORTHO05D008360 3.2e-09 64.7 39 74.4
Nitab4.5_0000676g0120 Nicotiana tabacum HOM05D006777 ORTHO05D008360 1.2e-08 62.8 33 84.8
Nitab4.5_0000850g0170 Nicotiana tabacum HOM05D006777 ORTHO05D008360 1.2e-08 62.8 33 84.8
Hund03125 Selenicereus undatus HOM05D006777 ORTHO05D008360 2.1e-08 62.0 35 80.0
SMO146G0157 Selaginella moellendorffii HOM05D006777 ORTHO05D008360 2.7e-08 61.6 38 76.3
CBR_g4477 Chara braunii HOM05D006777 ORTHO05D008360 1.9e-06 55.5 38 65.8


User provided reference genes

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