Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009647 Camellia sinensis var. sinensis HOM05D006126 ORTHO05D007792 1.6e-42 175.6 88 100.0
CSS0008321 Camellia sinensis var. sinensis HOM05D006126 ORTHO05D007792 3.5e-37 157.9 96 85.4
Actinidia37776 Actinidia chinensis HOM05D006126 ORTHO05D007792 6.5e-15 84.0 46 80.4
CSS0003927 Camellia sinensis var. sinensis HOM05D006126 ORTHO05D007792 1.9e-14 82.4 46 78.3
CSS0033902 Camellia sinensis var. sinensis HOM05D006126 ORTHO05D007792 1.9e-14 82.4 46 78.3
CANSAT64G0080 Cannabis sativa HOM05D006126 ORTHO05D007792 3.2e-14 81.6 46 80.4
Dinv11896 Davidia involucrata HOM05D006126 ORTHO05D007792 5.5e-14 80.9 46 78.3
CAN.G674.36 Capsicum annuum HOM05D006126 ORTHO05D007792 1.2e-13 79.7 46 78.3
Nitab4.5_0000721g0080 Nicotiana tabacum HOM05D006126 ORTHO05D007792 1.2e-13 79.7 46 78.3
Nitab4.5_0004995g0010 Nicotiana tabacum HOM05D006126 ORTHO05D007792 1.2e-13 79.7 46 78.3
Peaxi162Scf00203g00033 Petunia axillaris HOM05D006126 ORTHO05D007792 1.2e-13 79.7 46 78.3
Solyc10g081650.2 Solanum lycopersicum HOM05D006126 ORTHO05D007792 1.2e-13 79.7 46 78.3
Sopen10g032160 Solanum pennellii HOM05D006126 ORTHO05D007792 1.2e-13 79.7 46 78.3
PGSC0003DMG400028224 Solanum tuberosum HOM05D006126 ORTHO05D007792 1.2e-13 79.7 46 78.3
CiPaw.09G023900 Carya illinoinensis HOM05D006126 ORTHO05D007792 1.6e-13 79.3 46 78.3
ClCG10G017990 Citrullus lanatus HOM05D006126 ORTHO05D007792 2.1e-13 79.0 46 78.3
BcaC07g42047 Brassica carinata HOM05D006126 ORTHO05D007792 3.6e-13 78.2 46 76.1
A09p66770 Brassica napus HOM05D006126 ORTHO05D007792 3.6e-13 78.2 46 76.1
C08p50990 Brassica napus HOM05D006126 ORTHO05D007792 3.6e-13 78.2 46 76.1
BolC8t52627H Brassica oleracea HOM05D006126 ORTHO05D007792 3.6e-13 78.2 46 76.1
BraA09t42015Z Brassica rapa HOM05D006126 ORTHO05D007792 3.6e-13 78.2 46 76.1
CDE06G1404 Ceratophyllum demersum HOM05D006126 ORTHO05D007792 3.6e-13 78.2 46 76.1
DCAR_013459 Daucus carota HOM05D006126 ORTHO05D007792 3.6e-13 78.2 46 76.1
Eucgr.A02546 Eucalyptus grandis HOM05D006126 ORTHO05D007792 3.6e-13 78.2 46 78.3
Lsat_1_v5_gn_9_13960 Lactuca sativa HOM05D006126 ORTHO05D007792 3.6e-13 78.2 46 76.1
Phvul.007G265400 Phaseolus vulgaris HOM05D006126 ORTHO05D007792 3.6e-13 78.2 46 78.3
Sp1g05550 Schrenkiella parvula HOM05D006126 ORTHO05D007792 3.6e-13 78.2 46 76.1
VMungo0720G2782 Vigna mungo HOM05D006126 ORTHO05D007792 3.6e-13 78.2 46 78.3
GSVIVG01022527001 Vitis vinifera HOM05D006126 ORTHO05D007792 3.6e-13 78.2 46 78.3
arahy.Tifrunner.gnm1.ann1.1KUK4G Arachis hypogaea HOM05D006126 ORTHO05D007792 4.6e-13 77.8 46 73.9
arahy.Tifrunner.gnm1.ann1.Y9G5AQ Arachis hypogaea HOM05D006126 ORTHO05D007792 4.6e-13 77.8 46 73.9
MBI05_g40561_MAGBIO Magnolia biondii HOM05D006126 ORTHO05D007792 4.6e-13 77.8 46 76.1
QL07p026395 Quercus lobata HOM05D006126 ORTHO05D007792 4.6e-13 77.8 46 76.1
Sed0001019 Sechium edule HOM05D006126 ORTHO05D007792 4.6e-13 77.8 46 76.1
Manes.08G037100 Manihot esculenta HOM05D006126 ORTHO05D007792 6.1e-13 77.4 46 73.9
MELO3C009571.2 Cucumis melo HOM05D006126 ORTHO05D007792 7.9e-13 77.0 46 76.1
CsaV3_3G038300 Cucumis sativus L. HOM05D006126 ORTHO05D007792 7.9e-13 77.0 38 89.5
ECA247G0804 Erigeron canadensis HOM05D006126 ORTHO05D007792 7.9e-13 77.0 46 76.1
HanXRQChr08g0230681 Helianthus annuus HOM05D006126 ORTHO05D007792 7.9e-13 77.0 46 76.1
Lj1A1059G39 Lonicera japonica HOM05D006126 ORTHO05D007792 7.9e-13 77.0 46 73.9
Atru.chr8.1287 Acer truncatum HOM05D006126 ORTHO05D007792 1.0e-12 76.6 46 73.9
Aa31LG1G7850 Aethionema arabicum HOM05D006126 ORTHO05D007792 1.0e-12 76.6 46 73.9
Aa31LG1G7870 Aethionema arabicum HOM05D006126 ORTHO05D007792 1.0e-12 76.6 46 73.9
AL1G16820 Arabidopsis lyrata HOM05D006126 ORTHO05D007792 1.0e-12 76.6 46 73.9
AT1G06820 Arabidopsis thaliana HOM05D006126 ORTHO05D007792 1.0e-12 76.6 46 73.9
Carub.0001s0613 Capsella rubella HOM05D006126 ORTHO05D007792 1.0e-12 76.6 46 73.9
CARHR006510 Cardamine hirsuta HOM05D006126 ORTHO05D007792 1.0e-12 76.6 46 73.9
Ciclev10011230m.g Citrus clementina HOM05D006126 ORTHO05D007792 1.0e-12 76.6 46 73.9
Thhalv10007141m.g Eutrema salsugineum HOM05D006126 ORTHO05D007792 1.0e-12 76.6 46 73.9
Cc06_g06950 Coffea canephora HOM05D006126 ORTHO05D007792 1.4e-12 76.3 46 76.1
Ah.12g059600 Amaranthus hybridus HOM05D006126 ORTHO05D007792 1.8e-12 75.9 46 73.9
arahy.Tifrunner.gnm1.ann1.DC9D8R Arachis hypogaea HOM05D006126 ORTHO05D000008 1.8e-12 75.9 48 70.8
Rhsim03G0058700 Rhododendron simsii HOM05D006126 ORTHO05D007792 1.8e-12 75.9 48 72.9
TWI53G0494 Tripterygium wilfordii HOM05D006126 ORTHO05D007792 1.8e-12 75.9 46 76.1
Migut.L01843 Erythranthe guttata HOM05D006126 ORTHO05D007792 2.3e-12 75.5 46 73.9
MD14G1044400 Malus domestica HOM05D006126 ORTHO05D007792 2.3e-12 75.5 46 73.9
Cpa.g.sc222.16 Carica papaya HOM05D006126 ORTHO05D007792 3.0e-12 75.1 46 73.9
Cfa020070 Carpinus fangiana HOM05D006126 ORTHO05D007792 3.0e-12 75.1 46 73.9
Haze_20125 Corylus avellana HOM05D006126 ORTHO05D007792 3.0e-12 75.1 46 73.9
FvH4_6g21000 Fragaria vesca HOM05D006126 ORTHO05D007792 3.0e-12 75.1 46 73.9
FAN05G1377 Fragaria x ananassa HOM05D006126 ORTHO05D007792 3.0e-12 75.1 46 73.9
FAN05G2399 Fragaria x ananassa HOM05D006126 ORTHO05D007792 3.0e-12 75.1 46 73.9
FAN09G1524 Fragaria x ananassa HOM05D006126 ORTHO05D007792 3.0e-12 75.1 46 73.9
FAN14G0373 Fragaria x ananassa HOM05D006126 ORTHO05D007792 3.0e-12 75.1 46 73.9
Lj5g0022903 Lotus japonicus HOM05D006126 ORTHO05D007792 3.0e-12 75.1 46 71.7
Potri.006G199600 Populus trichocarpa HOM05D006126 ORTHO05D007792 3.0e-12 75.1 46 71.7
RcHm_v2.0_Chr3g0477381 Rosa chinensis HOM05D006126 ORTHO05D007792 3.0e-12 75.1 46 73.9
Nn2g14414 Nelumbo nucifera HOM05D006126 ORTHO05D007792 3.9e-12 74.7 46 73.9
Prupe.7G089400 Prunus persica HOM05D006126 ORTHO05D007792 3.9e-12 74.7 46 73.9
Aqoxy2G00644 Aquilegia oxysepala HOM05D006126 ORTHO05D007792 5.1e-12 74.3 46 71.7
Ca_11655_v3 Cicer arietinum L. HOM05D006126 ORTHO05D007792 5.1e-12 74.3 46 73.9
Potri.016G066000 Populus trichocarpa HOM05D006126 ORTHO05D007792 5.1e-12 74.3 46 71.7
Sabra16G0067300 Salix brachista HOM05D006126 ORTHO05D007792 5.1e-12 74.3 46 71.7
Medtr1g054965 Medicago truncatula HOM05D006126 ORTHO05D007792 6.7e-12 73.9 46 73.9
Psat6g087240 Pisum sativum HOM05D006126 ORTHO05D007792 6.7e-12 73.9 46 73.9
TPR.G21232 Trifolium pratense HOM05D006126 ORTHO05D007792 6.7e-12 73.9 46 73.9
Gohir.A01G135800 Gossypium hirsutum HOM05D006126 ORTHO05D007792 8.8e-12 73.6 46 76.1
Gohir.D01G122900 Gossypium hirsutum HOM05D006126 ORTHO05D007792 8.8e-12 73.6 46 76.1
Gorai.002G153800 Gossypium raimondii HOM05D006126 ORTHO05D007792 8.8e-12 73.6 46 76.1
Lalb_Chr02g0154231 Lupinus albus HOM05D006126 ORTHO05D007792 8.8e-12 73.6 46 73.9
TAR633G2701 Trochodendron aralioides HOM05D006126 ORTHO05D007792 8.8e-12 73.6 46 71.7
Pp3c23_1220 Physcomitrium patens HOM05D006126 ORTHO05D007792 1.1e-11 73.2 46 69.6
Glyma.02G188200 Glycine max HOM05D006126 ORTHO05D007792 1.5e-11 72.8 46 73.9
Glyma.10G086700 Glycine max HOM05D006126 ORTHO05D007792 1.5e-11 72.8 46 73.9
PSO339G3826 Papaver somniferum HOM05D006126 ORTHO05D007792 1.5e-11 72.8 46 71.7
PSO384G0472 Papaver somniferum HOM05D006126 ORTHO05D007792 1.5e-11 72.8 46 71.7
Sc01g0005650 Simmondsia chinensis HOM05D006126 ORTHO05D007792 1.5e-11 72.8 38 86.8
AUR62038430 Chenopodium quinoa HOM05D006126 ORTHO05D007792 2.0e-11 72.4 46 69.6
Hund10797 Selenicereus undatus HOM05D006126 ORTHO05D007792 2.0e-11 72.4 46 71.7
AUR62036324 Chenopodium quinoa HOM05D006126 ORTHO05D007792 2.5e-11 72.0 46 67.4
Thecc.05G109900 Theobroma cacao HOM05D006126 ORTHO05D007792 2.5e-11 72.0 46 73.9
unitig_578.g16481 Utricularia gibba HOM05D006126 ORTHO05D007792 2.5e-11 72.0 46 67.4
HPP92_002245 Vanilla planifolia HOM05D006126 ORTHO05D007792 2.5e-11 72.0 46 69.6
Duzib093G1994 Durio zibethinus HOM05D006126 ORTHO05D007792 3.3e-11 71.6 46 73.9
THA.LOC104823508 Tarenaya hassleriana HOM05D006126 ORTHO05D007792 3.3e-11 71.6 46 67.4
Os11g0572700 Oryza sativa ssp. japonica HOM05D006126 ORTHO05D007792 4.3e-11 71.2 46 69.6
Pp3c20_12140 Physcomitrium patens HOM05D006126 ORTHO05D007792 4.3e-11 71.2 46 67.4
RcHm_v2.0_Chr7g0212011 Rosa chinensis HOM05D006126 ORTHO05D007792 4.3e-11 71.2 46 69.6
Zm00001eb114270 Zea mays HOM05D006126 ORTHO05D007792 4.3e-11 71.2 46 69.6
Zm00001eb200170 Zea mays HOM05D006126 ORTHO05D007792 4.3e-11 71.2 46 69.6
EL10Ac5g11809 Beta vulgaris HOM05D006126 ORTHO05D007792 5.7e-11 70.9 46 67.4
SMO141G0109 Selaginella moellendorffii HOM05D006126 ORTHO05D007792 7.4e-11 70.5 46 67.4
COL.COLO4_29497 Corchorus olitorius HOM05D006126 ORTHO05D007792 1.7e-10 69.3 46 69.6
Mapoly0010s0015 Marchantia polymorpha HOM05D006126 ORTHO05D007792 2.8e-10 68.6 45 64.4
CBR_g48125 Chara braunii HOM05D006126 ORTHO05D007792 1.4e-09 66.2 46 58.7
Oeu063079.1 Olea europaea HOM05D006126 ORTHO05D007792 1.5e-08 62.8 46 63.0
Cre16.g651923 Chlamydomonas reinhardtii HOM05D006126 ORTHO05D007792 2.9e-07 58.5 49 55.1
SGA_v2.0_scaffold184G40037 Striga asiatica HOM05D006126 ORTHO05D007792 6.5e-07 57.4 39 69.2


User provided reference genes

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