Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009631 Camellia sinensis var. sinensis HOM05D008623 ORTHO05D007789 3.2e-107 391.7 195 100.0
CSS0027810 Camellia sinensis var. sinensis HOM05D008623 ORTHO05D007789 2.5e-91 339.0 195 89.2
CSS0001693 Camellia sinensis var. sinensis HOM05D008623 ORTHO05D007789 1.7e-47 193.4 204 56.9
CSS0007245 Camellia sinensis var. sinensis HOM05D008623 ORTHO05D007789 1.6e-45 186.8 205 55.1
CSS0000671 Camellia sinensis var. sinensis HOM05D008623 ORTHO05D007789 4.6e-45 185.3 209 54.1
CSS0009704 Camellia sinensis var. sinensis HOM05D008623 ORTHO05D007789 3.0e-44 182.6 186 55.9
CSS0021925 Camellia sinensis var. sinensis HOM05D008623 ORTHO05D007789 5.1e-44 181.8 207 52.7
CSS0013123 Camellia sinensis var. sinensis HOM05D008623 ORTHO05D007789 8.6e-44 181.0 205 51.7
CSS0008461 Camellia sinensis var. sinensis HOM05D008623 ORTHO05D007789 1.1e-43 180.6 205 53.2
CSS0008827 Camellia sinensis var. sinensis HOM05D008623 ORTHO05D007789 5.6e-43 178.3 174 56.9
CSS0032446 Camellia sinensis var. sinensis HOM05D008623 ORTHO05D007789 1.6e-42 176.8 203 51.2
CSS0006348 Camellia sinensis var. sinensis HOM05D008623 ORTHO05D007789 1.2e-37 160.6 194 50.0
CSS0033613 Camellia sinensis var. sinensis HOM05D008623 ORTHO05D007789 1.5e-32 143.7 186 46.2
CSS0008468 Camellia sinensis var. sinensis HOM05D008623 ORTHO05D007789 2.9e-31 139.4 111 61.3
CSS0011935 Camellia sinensis var. sinensis HOM05D008623 ORTHO05D007789 1.6e-29 133.7 174 47.7
CSS0005018 Camellia sinensis var. sinensis HOM05D008623 ORTHO05D007789 4.3e-27 125.6 128 56.2
RhsimUnG0235700 Rhododendron simsii HOM05D008623 ORTHO05D007789 1.3e-26 124.0 188 45.2
CSS0015212 Camellia sinensis var. sinensis HOM05D008623 ORTHO05D007789 2.4e-22 109.8 182 42.9
Rhsim02G0175700 Rhododendron simsii HOM05D008623 ORTHO05D007789 1.8e-20 103.6 170 42.9
Sed0001543 Sechium edule HOM05D008623 ORTHO05D007789 2.1e-18 96.7 156 37.2
CSS0014991 Camellia sinensis var. sinensis HOM05D008623 ORTHO05D007789 2.8e-18 96.3 147 42.9
Rhsim03G0082100 Rhododendron simsii HOM05D008623 ORTHO05D007789 3.7e-18 95.9 177 41.8
PGR083G1822 Punica granatum HOM05D008623 ORTHO05D007789 2.6e-16 89.7 126 42.9
TWI73G0112 Tripterygium wilfordii HOM05D018753 ORTHO05D007789 2.6e-16 89.7 150 38.7
TWI36G0009 Tripterygium wilfordii HOM05D018753 ORTHO05D007789 3.4e-16 89.4 202 31.7
TWI36G0661 Tripterygium wilfordii HOM05D018753 ORTHO05D007789 3.4e-16 89.4 130 37.7
QL10p030347 Quercus lobata HOM05D019990 ORTHO05D007789 4.5e-16 89.0 144 40.3
PGR083G2548 Punica granatum HOM05D008623 ORTHO05D007789 7.6e-16 88.2 126 42.9
PGR083G2854 Punica granatum HOM05D008623 ORTHO05D007789 9.9e-16 87.8 126 41.3
QL10p030102 Quercus lobata HOM05D019990 ORTHO05D007789 1.3e-15 87.4 144 41.0
Sed0025575 Sechium edule HOM05D008623 ORTHO05D007789 1.3e-15 87.4 117 40.2
QL10p030388 Quercus lobata HOM05D019990 ORTHO05D007789 1.7e-15 87.0 144 39.6
CSS0009699 Camellia sinensis var. sinensis HOM05D008623 ORTHO05D007789 2.9e-15 86.3 188 36.2
Hma1.2p1_0785F.1_g217500 Hydrangea macrophylla HOM05D008623 ORTHO05D007789 4.9e-15 85.5 139 36.0
TWI73G0560 Tripterygium wilfordii HOM05D018753 ORTHO05D007789 6.4e-15 85.1 144 41.0
TWI73G1234 Tripterygium wilfordii HOM05D018753 ORTHO05D007789 6.4e-15 85.1 144 41.0
QL10p030090 Quercus lobata HOM05D019990 ORTHO05D007789 8.4e-15 84.7 167 38.3
Sed0015244 Sechium edule HOM05D008623 ORTHO05D007789 8.4e-15 84.7 119 37.0
QL10p030420 Quercus lobata HOM05D019990 ORTHO05D007789 1.4e-14 84.0 126 40.5
CiPaw.10G106000 Carya illinoinensis HOM05D010787 ORTHO05D011812 7.1e-14 81.6 146 37.7
PGSC0003DMG402009490 Solanum tuberosum HOM05D010354 ORTHO05D012840 2.1e-13 80.1 149 36.9
CiPaw.10G106500 Carya illinoinensis HOM05D010787 ORTHO05D011812 4.6e-13 79.0 146 37.0
CiPaw.10G106200 Carya illinoinensis HOM05D010787 ORTHO05D011812 6.0e-13 78.6 146 37.0
CiPaw.10G106400 Carya illinoinensis HOM05D010787 ORTHO05D011812 6.0e-13 78.6 114 41.2
Dinv41569 Davidia involucrata HOM05D008623 ORTHO05D007789 7.9e-13 78.2 126 40.5
Duzib187G0243 Durio zibethinus HOM05D016489 ORTHO05D007789 1.3e-12 77.4 158 35.4
CiPaw.10G108400 Carya illinoinensis HOM05D010787 ORTHO05D011812 3.0e-12 76.3 115 41.7
Actinidia14014 Actinidia chinensis HOM05D008623 ORTHO05D010647 3.9e-12 75.9 153 37.3
Dinv41634 Davidia involucrata HOM05D008623 ORTHO05D007789 3.9e-12 75.9 116 41.4
Rhsim12G0199400 Rhododendron simsii HOM05D009663 ORTHO05D007789 6.7e-12 75.1 122 35.2
Nitab4.5_0000556g0070 Nicotiana tabacum HOM05D010354 ORTHO05D012840 8.7e-12 74.7 161 32.9
Dinv01175 Davidia involucrata HOM05D008623 ORTHO05D007789 1.5e-11 73.9 116 41.4
Lj1A798T45 Lonicera japonica HOM05D011954 ORTHO05D014236 1.9e-11 73.6 127 38.6
Sed0026611 Sechium edule HOM05D008623 ORTHO05D007789 1.9e-11 73.6 102 39.2
PGR142G3708 Punica granatum HOM05D008623 ORTHO05D007789 2.5e-11 73.2 106 35.8
PGSC0003DMG400006633 Solanum tuberosum HOM05D010354 ORTHO05D012840 3.3e-11 72.8 145 39.3
PGR142G1144 Punica granatum HOM05D008623 ORTHO05D007789 5.6e-11 72.0 125 34.4
Rhsim13G0019200 Rhododendron simsii HOM05D009663 ORTHO05D007789 5.6e-11 72.0 126 36.5
Rhsim12G0082000 Rhododendron simsii HOM05D009663 ORTHO05D007789 9.6e-11 71.2 122 36.1
Sopen02g016420 Solanum pennellii HOM05D010354 ORTHO05D012840 9.6e-11 71.2 148 37.2
PGSC0003DMG400006632 Solanum tuberosum HOM05D010354 ORTHO05D012840 9.6e-11 71.2 156 36.5
TWI36G0611 Tripterygium wilfordii HOM05D018753 ORTHO05D007789 9.6e-11 71.2 117 38.5
Peaxi162Scf00045g00629 Petunia axillaris HOM05D010354 ORTHO05D012840 1.3e-10 70.9 143 37.1
Actinidia04665 Actinidia chinensis HOM05D008623 ORTHO05D010647 1.6e-10 70.5 133 38.3
Rhsim10G0206900 Rhododendron simsii HOM05D009663 ORTHO05D007789 1.6e-10 70.5 130 33.8
Rhsim06G0038100 Rhododendron simsii HOM05D038451 ORTHO05D007789 2.1e-10 70.1 120 35.0
vmacro16961 Vaccinium macrocarpon HOM05D009663 ORTHO05D007789 2.1e-10 70.1 122 36.1
Dinv04048 Davidia involucrata HOM05D000041 ORTHO05D019419 2.8e-10 69.7 111 39.6
RhsimUnG0120400 Rhododendron simsii HOM05D009663 ORTHO05D007789 2.8e-10 69.7 109 36.7
Peaxi162Scf00700g00238 Petunia axillaris HOM05D008744 ORTHO05D010647 4.8e-10 68.9 185 33.0
Rhsim10G0165100 Rhododendron simsii HOM05D009663 ORTHO05D007789 4.8e-10 68.9 123 34.1
CSS0001720 Camellia sinensis var. sinensis HOM05D019829 ORTHO05D007789 1.1e-09 67.8 181 32.0
Sed0024472 Sechium edule HOM05D034586 ORTHO05D007789 1.1e-09 67.8 150 37.3
vmacro01230 Vaccinium macrocarpon HOM05D009663 ORTHO05D007789 1.1e-09 67.8 131 35.9
Rhsim04G0228600 Rhododendron simsii HOM05D009663 ORTHO05D011812 1.4e-09 67.4 117 33.3
Sopen09g005440 Solanum pennellii HOM05D008744 ORTHO05D010647 1.4e-09 67.4 92 43.5
Sopen09g005480 Solanum pennellii HOM05D008744 ORTHO05D010647 1.4e-09 67.4 92 43.5
PGSC0003DMG402028118 Solanum tuberosum HOM05D001907 ORTHO05D015557 3.1e-09 66.2 151 37.7
Thecc.01G408800 Theobroma cacao HOM05D008623 ORTHO05D007789 4.0e-09 65.9 110 33.6
arahy.Tifrunner.gnm1.ann1.E31NWF Arachis hypogaea HOM05D010841 ORTHO05D007789 5.3e-09 65.5 110 39.1
Rhsim04G0228800 Rhododendron simsii HOM05D009663 ORTHO05D011812 5.3e-09 65.5 118 33.9
Hund23397 Selenicereus undatus HOM05D031382 ORTHO05D030591 5.3e-09 65.5 133 30.1
arahy.Tifrunner.gnm1.ann1.B6M36H Arachis hypogaea HOM05D010841 ORTHO05D007789 6.9e-09 65.1 128 36.7
CSS0039646 Camellia sinensis var. sinensis HOM05D019829 ORTHO05D007789 9.0e-09 64.7 184 32.1
Rhsim12G0026200 Rhododendron simsii HOM05D010787 ORTHO05D011812 9.0e-09 64.7 134 36.6
Cc02_g13970 Coffea canephora HOM05D039367 ORTHO05D010647 1.2e-08 64.3 117 36.8
Lj1A773T40 Lonicera japonica HOM05D011954 ORTHO05D014236 1.5e-08 63.9 143 32.9
arahy.Tifrunner.gnm1.ann1.52E6WN Arachis hypogaea HOM05D010841 ORTHO05D007789 2.0e-08 63.5 128 35.9
Lj1A773T41 Lonicera japonica HOM05D011954 ORTHO05D014236 2.0e-08 63.5 125 34.4
Lj1A778T39 Lonicera japonica HOM05D011954 ORTHO05D014236 2.0e-08 63.5 143 32.9
Lj1A798T44 Lonicera japonica HOM05D011954 ORTHO05D014236 2.0e-08 63.5 126 34.9
arahy.Tifrunner.gnm1.ann1.G2WS8B Arachis hypogaea HOM05D010841 ORTHO05D007789 2.6e-08 63.2 124 40.3
arahy.Tifrunner.gnm1.ann1.UYW4TV Arachis hypogaea HOM05D010841 ORTHO05D007789 4.5e-08 62.4 124 39.5
Medtr3g082420 Medicago truncatula HOM05D009148 ORTHO05D011895 4.5e-08 62.4 183 33.3
Rhsim06G0038200 Rhododendron simsii HOM05D038451 ORTHO05D007789 4.5e-08 62.4 122 33.6
Nitab4.5_0000043g0070 Nicotiana tabacum HOM05D008744 ORTHO05D010647 5.8e-08 62.0 145 30.3
Rhsim12G0199500 Rhododendron simsii HOM05D000727 ORTHO05D000541 5.8e-08 62.0 119 34.5
arahy.Tifrunner.gnm1.ann1.82LERJ Arachis hypogaea HOM05D010841 ORTHO05D007789 7.6e-08 61.6 126 34.1
arahy.Tifrunner.gnm1.ann1.U7E3JB Arachis hypogaea HOM05D010841 ORTHO05D007789 7.6e-08 61.6 94 39.4
RhsimUnG0120300 Rhododendron simsii HOM05D009663 ORTHO05D007789 7.6e-08 61.6 119 32.8
CSS0006926 Camellia sinensis var. sinensis HOM05D019829 ORTHO05D007789 1.0e-07 61.2 179 30.2
Sed0008488 Sechium edule HOM05D034586 ORTHO05D007789 1.0e-07 61.2 115 39.1
Thhalv10023669m.g Eutrema salsugineum HOM05D007210 ORTHO05D006152 1.3e-07 60.8 134 38.8
Nitab4.5_0000559g0160 Nicotiana tabacum HOM05D008744 ORTHO05D010647 1.3e-07 60.8 115 33.9
Nitab4.5_0000613g0220 Nicotiana tabacum HOM05D010354 ORTHO05D012840 1.3e-07 60.8 163 27.6
Dinv36278 Davidia involucrata HOM05D000519 ORTHO05D001210 1.7e-07 60.5 119 34.5
Solyc03g097080.4 Solanum lycopersicum HOM05D008744 ORTHO05D010647 2.2e-07 60.1 128 32.0
Carub.0007s2602 Capsella rubella HOM05D008242 ORTHO05D012602 2.9e-07 59.7 121 33.9
CARHR208050 Cardamine hirsuta HOM05D008885 ORTHO05D006152 3.8e-07 59.3 173 31.8
Rhsim06G0172100 Rhododendron simsii HOM05D000032 ORTHO05D009914 3.8e-07 59.3 138 31.9
Nitab4.5_0004672g0020 Nicotiana tabacum HOM05D010354 ORTHO05D012840 4.9e-07 58.9 126 38.1
Sp2g04770 Schrenkiella parvula HOM05D007210 ORTHO05D006152 4.9e-07 58.9 75 45.3
Dinv41577 Davidia involucrata HOM05D008623 ORTHO05D007789 6.5e-07 58.5 94 39.4
Rhsim07G0120300 Rhododendron simsii HOM05D009663 ORTHO05D007789 8.4e-07 58.2 127 30.7
Sed0015950 Sechium edule HOM05D034586 ORTHO05D007789 8.4e-07 58.2 154 31.8
Sopen03g027820 Solanum pennellii HOM05D008744 ORTHO05D010647 8.4e-07 58.2 176 28.4
Medtr3g082340 Medicago truncatula HOM05D009148 ORTHO05D011895 1.1e-06 57.8 205 30.2
PGSC0003DMG400003145 Solanum tuberosum HOM05D008744 ORTHO05D010647 1.1e-06 57.8 128 32.0
arahy.Tifrunner.gnm1.ann1.J4CNX7 Arachis hypogaea HOM05D010841 ORTHO05D007789 1.4e-06 57.4 111 34.2
arahy.Tifrunner.gnm1.ann1.JW8DXZ Arachis hypogaea HOM05D010841 ORTHO05D007789 1.4e-06 57.4 112 33.0
PGSC0003DMG400013382 Solanum tuberosum HOM05D008744 ORTHO05D010647 1.4e-06 57.4 147 31.3
Peaxi162Scf01013g00008 Petunia axillaris HOM05D008744 ORTHO05D010647 1.9e-06 57.0 156 28.2
Rhsim07G0120100 Rhododendron simsii HOM05D009663 ORTHO05D007789 1.9e-06 57.0 93 33.3
PGSC0003DMG400012275 Solanum tuberosum HOM05D008744 ORTHO05D010647 1.9e-06 57.0 157 32.5
AT1G63206 Arabidopsis thaliana HOM05D007210 ORTHO05D006152 2.5e-06 56.6 123 36.6
Duzib187G1948 Durio zibethinus HOM05D016489 ORTHO05D007789 2.5e-06 56.6 84 35.7
AL7G39700 Arabidopsis lyrata HOM05D008242 ORTHO05D012602 3.2e-06 56.2 131 34.4
AL7G39710 Arabidopsis lyrata HOM05D008242 ORTHO05D012602 3.2e-06 56.2 131 36.6
CSS0019356 Camellia sinensis var. sinensis HOM05D019829 ORTHO05D007789 3.2e-06 56.2 106 36.8
CARHR270660 Cardamine hirsuta HOM05D007210 ORTHO05D006152 3.2e-06 56.2 127 35.4
Rhsim06G0060500 Rhododendron simsii HOM05D031946 ORTHO05D007789 3.2e-06 56.2 129 31.8
AL304U10030 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 4.2e-06 55.8 147 26.5
CARHR040800 Cardamine hirsuta HOM05D008885 ORTHO05D006152 4.2e-06 55.8 67 47.8
QL04p003256 Quercus lobata HOM05D019990 ORTHO05D007789 4.2e-06 55.8 130 33.8
AL2G12230 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 5.5e-06 55.5 132 33.3
AL2G12320 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 5.5e-06 55.5 135 34.8
Rhsim06G0044600 Rhododendron simsii HOM05D009663 ORTHO05D007789 5.5e-06 55.5 142 32.4
RhsimUnG0148900 Rhododendron simsii HOM05D009663 ORTHO05D011812 5.5e-06 55.5 102 35.3
THA.LOC104820431 Tarenaya hassleriana HOM05D008242 ORTHO05D010974 5.5e-06 55.5 173 28.3
AL2G12220 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 7.1e-06 55.1 132 34.1
AL3G16360 Arabidopsis lyrata HOM05D004201 ORTHO05D031360 7.1e-06 55.1 151 29.8
AT1G63190 Arabidopsis thaliana HOM05D007210 ORTHO05D006152 7.1e-06 55.1 127 36.2
BcaB01g04427 Brassica carinata HOM05D007210 ORTHO05D006152 7.1e-06 55.1 127 34.6
CAN.G1237.18 Capsicum annuum HOM05D005255 ORTHO05D006276 7.1e-06 55.1 92 31.5
Peaxi162Scf00045g00639 Petunia axillaris HOM05D010354 ORTHO05D012840 7.1e-06 55.1 143 32.9
Sp2g01360 Schrenkiella parvula HOM05D007210 ORTHO05D006152 7.1e-06 55.1 137 35.0
A03p13080 Brassica napus HOM05D007210 ORTHO05D006152 9.3e-06 54.7 174 29.3
BraA03t10619Z Brassica rapa HOM05D007210 ORTHO05D006152 9.3e-06 54.7 174 29.3
CARHR079820 Cardamine hirsuta HOM05D004201 ORTHO05D011677 9.3e-06 54.7 74 32.4


User provided reference genes

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