Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009612 Camellia sinensis var. sinensis HOM05D006881 ORTHO05D008423 2.8e-69 265.4 158 100.0
CSS0005297 Camellia sinensis var. sinensis HOM05D006881 ORTHO05D008423 6.9e-68 260.8 159 99.4
vmacro15245 Vaccinium macrocarpon HOM05D006881 ORTHO05D008423 4.7e-48 194.9 158 72.2
CSS0015929 Camellia sinensis var. sinensis HOM05D006881 ORTHO05D008423 8.0e-48 194.1 168 80.4
Actinidia00041 Actinidia chinensis HOM05D006881 ORTHO05D008423 1.1e-44 183.7 163 67.5
CSS0034417 Camellia sinensis var. sinensis HOM05D006881 ORTHO05D008423 1.2e-40 170.2 158 64.6
Ciclev10005896m.g Citrus clementina HOM05D006881 ORTHO05D008423 1.4e-39 166.8 161 67.7
GSVIVG01017769001 Vitis vinifera HOM05D006881 ORTHO05D008423 3.0e-39 165.6 158 68.4
Thecc.04G282000 Theobroma cacao HOM05D006881 ORTHO05D008423 7.5e-38 161.0 121 74.4
Dinv38306 Davidia involucrata HOM05D006881 ORTHO05D008423 1.7e-37 159.8 170 64.7
PGSC0003DMG400010658 Solanum tuberosum HOM05D006881 ORTHO05D008423 1.7e-37 159.8 158 65.8
Solyc01g067580.4 Solanum lycopersicum HOM05D006881 ORTHO05D008423 2.2e-37 159.5 158 65.8
Sopen01g029530 Solanum pennellii HOM05D006881 ORTHO05D008423 2.8e-37 159.1 158 65.2
Manes.03G192600 Manihot esculenta HOM05D006881 ORTHO05D008423 1.1e-36 157.1 115 71.3
Gohir.A02G048200 Gossypium hirsutum HOM05D006881 ORTHO05D008423 2.4e-36 156.0 160 70.6
Prupe.1G139200 Prunus persica HOM05D006881 ORTHO05D008423 4.1e-36 155.2 157 72.0
TAR636G2672 Trochodendron aralioides HOM05D006881 ORTHO05D008423 5.4e-36 154.8 108 75.9
Gohir.D02G053300 Gossypium hirsutum HOM05D006881 ORTHO05D008423 9.2e-36 154.1 160 70.6
PSO210G1559 Papaver somniferum HOM05D006881 ORTHO05D008423 1.2e-35 153.7 119 68.1
SGA_v2.0_scaffold86G26903 Striga asiatica HOM05D006881 ORTHO05D008423 1.2e-35 153.7 165 66.1
Cc03_g02070 Coffea canephora HOM05D006881 ORTHO05D008423 2.0e-35 152.9 156 68.6
Duzib212G0198 Durio zibethinus HOM05D006881 ORTHO05D008423 2.0e-35 152.9 121 71.1
Peaxi162Scf00386g00414 Petunia axillaris HOM05D006881 ORTHO05D008423 2.0e-35 152.9 111 73.0
Aa31LG11G11080 Aethionema arabicum HOM05D006881 ORTHO05D008423 2.7e-35 152.5 162 67.3
Sabra08G0154800 Salix brachista HOM05D006881 ORTHO05D008423 2.7e-35 152.5 121 68.6
MSTRG.10082 Avicennia marina HOM05D006881 ORTHO05D008423 4.5e-35 151.8 160 65.0
PSO170G5464 Papaver somniferum HOM05D006881 ORTHO05D008423 5.9e-35 151.4 119 68.1
SalBow2G0124 Salvia bowleyana HOM05D006881 ORTHO05D008423 1.3e-34 150.2 160 66.2
Gorai.005G059100 Gossypium raimondii HOM05D006881 ORTHO05D008423 1.7e-34 149.8 119 72.3
Phvul.009G245900 Phaseolus vulgaris HOM05D006881 ORTHO05D008423 1.7e-34 149.8 160 66.9
Potri.008G216700 Populus trichocarpa HOM05D006881 ORTHO05D008423 1.7e-34 149.8 159 62.3
Oeu021111.1 Olea europaea HOM05D006881 ORTHO05D008423 3.8e-34 148.7 111 73.9
TPR.G23710 Trifolium pratense HOM05D006881 ORTHO05D008423 6.6e-34 147.9 111 71.2
SalBow2G2956 Salvia bowleyana HOM05D006881 ORTHO05D008423 1.1e-33 147.1 107 71.0
MBI19_g24002_MAGBIO Magnolia biondii HOM05D006881 ORTHO05D008423 1.5e-33 146.7 117 69.2
Psat1g151960 Pisum sativum HOM05D006881 ORTHO05D008423 2.5e-33 146.0 114 69.3
AT5G18540 Arabidopsis thaliana HOM05D006881 ORTHO05D008423 3.3e-33 145.6 119 73.1
Carub.0006s1681 Capsella rubella HOM05D006881 ORTHO05D008423 3.3e-33 145.6 162 69.8
CANSAT78G0809 Cannabis sativa HOM05D006881 ORTHO05D008423 4.3e-33 145.2 123 68.3
TWI09G1277 Tripterygium wilfordii HOM05D006881 ORTHO05D008423 4.3e-33 145.2 111 71.2
Atru.chr4.2800 Acer truncatum HOM05D006881 ORTHO05D008423 5.6e-33 144.8 159 66.0
AL6G29810 Arabidopsis lyrata HOM05D006881 ORTHO05D008423 5.6e-33 144.8 162 71.0
CAN.G223.19 Capsicum annuum HOM05D006881 ORTHO05D008423 5.6e-33 144.8 120 63.3
ECA246G4172 Erigeron canadensis HOM05D006881 ORTHO05D008423 5.6e-33 144.8 113 69.9
CiPaw.01G150600 Carya illinoinensis HOM05D006881 ORTHO05D008423 7.3e-33 144.4 120 68.3
HanXRQChr17g0536111 Helianthus annuus HOM05D006881 ORTHO05D008423 7.3e-33 144.4 109 69.7
QL06p008283 Quercus lobata HOM05D006881 ORTHO05D008423 7.3e-33 144.4 113 70.8
VMungo1309G2079 Vigna mungo HOM05D006881 ORTHO05D008423 9.5e-33 144.1 106 71.7
DCAR_024558 Daucus carota HOM05D006881 ORTHO05D008423 1.2e-32 143.7 121 66.1
Migut.G00182 Erythranthe guttata HOM05D006881 ORTHO05D008423 1.2e-32 143.7 158 62.7
Lsat_1_v5_gn_3_24181 Lactuca sativa HOM05D006881 ORTHO05D008423 1.2e-32 143.7 114 67.5
Lalb_Chr18g0051811 Lupinus albus HOM05D006881 ORTHO05D008423 1.2e-32 143.7 119 68.1
arahy.Tifrunner.gnm1.ann1.E8HU74 Arachis hypogaea HOM05D006881 ORTHO05D008423 1.6e-32 143.3 106 73.6
Cpa.g.sc16.153 Carica papaya HOM05D006881 ORTHO05D008423 1.6e-32 143.3 108 71.3
Glyma.15G154400 Glycine max HOM05D006881 ORTHO05D008423 1.6e-32 143.3 159 66.7
Glyma.09G046900 Glycine max HOM05D006881 ORTHO05D008423 3.6e-32 142.1 106 73.6
BcaB05g23335 Brassica carinata HOM05D006881 ORTHO05D008423 6.1e-32 141.4 120 69.2
BcaC03g13606 Brassica carinata HOM05D006881 ORTHO05D008423 1.8e-31 139.8 120 68.3
C02p10000 Brassica napus HOM05D006881 ORTHO05D008423 1.8e-31 139.8 120 68.3
Os07g0669600 Oryza sativa ssp. japonica HOM05D006881 ORTHO05D008423 1.8e-31 139.8 106 72.6
THA.LOC104818851 Tarenaya hassleriana HOM05D006881 ORTHO05D008423 1.8e-31 139.8 109 68.8
Thhalv10014829m.g Eutrema salsugineum HOM05D006881 ORTHO05D008423 2.3e-31 139.4 120 66.7
Sp6g25790 Schrenkiella parvula HOM05D006881 ORTHO05D008423 2.3e-31 139.4 162 66.7
EL10Ac3g06585 Beta vulgaris HOM05D006881 ORTHO05D008423 3.0e-31 139.0 121 63.6
unitig_748.g8741 Utricularia gibba HOM05D006881 ORTHO05D008423 3.0e-31 139.0 111 70.3
CARHR194480 Cardamine hirsuta HOM05D006881 ORTHO05D008423 4.0e-31 138.7 119 68.9
A02p04970 Brassica napus HOM05D006881 ORTHO05D008423 5.2e-31 138.3 111 71.2
Hund20570 Selenicereus undatus HOM05D006881 ORTHO05D008423 5.2e-31 138.3 121 62.8
Ca_02413_v3 Cicer arietinum L. HOM05D002802 ORTHO05D003166 8.9e-31 137.5 111 68.5
Aqoxy2G03052 Aquilegia oxysepala HOM05D006881 ORTHO05D008423 1.2e-30 137.1 122 62.3
Lj6g0021421 Lotus japonicus HOM05D006881 ORTHO05D008423 2.0e-30 136.3 106 70.8
Eucgr.B01283 Eucalyptus grandis HOM05D006881 ORTHO05D008423 3.4e-30 135.6 112 67.0
Rhsim02G0011900 Rhododendron simsii HOM05D006881 ORTHO05D008423 3.4e-30 135.6 87 85.1
BraA02t05456Z Brassica rapa HOM05D006881 ORTHO05D008423 5.7e-30 134.8 109 70.6
Zm00001eb330210 Zea mays HOM05D006881 ORTHO05D008423 5.7e-30 134.8 113 64.6
ClCG05G005980 Citrullus lanatus HOM05D006881 ORTHO05D008423 9.8e-30 134.0 113 64.6
CSS0002463 Camellia sinensis var. sinensis HOM05D006881 ORTHO05D008423 1.7e-29 133.3 156 55.8
MD13G1170800 Malus domestica HOM05D006881 ORTHO05D008423 8.3e-29 131.0 116 65.5
arahy.Tifrunner.gnm1.ann1.NXX1KJ Arachis hypogaea HOM05D006881 ORTHO05D008423 1.1e-28 130.6 125 62.4
RcHm_v2.0_Chr4g0421611 Rosa chinensis HOM05D006881 ORTHO05D008423 1.1e-28 130.6 160 63.1
PGR031G0133 Punica granatum HOM05D006881 ORTHO05D008423 1.8e-28 129.8 115 66.1
Sed0007304 Sechium edule HOM05D006881 ORTHO05D008423 5.4e-28 128.3 121 62.0
FvH4_4g17670 Fragaria vesca HOM05D006881 ORTHO05D008423 9.2e-28 127.5 117 64.1
FAN12G2006 Fragaria x ananassa HOM05D006881 ORTHO05D008423 9.2e-28 127.5 117 64.1
FAN12G2996 Fragaria x ananassa HOM05D006881 ORTHO05D008423 9.2e-28 127.5 117 64.1
FAN17G1543 Fragaria x ananassa HOM05D006881 ORTHO05D008423 9.2e-28 127.5 117 64.1
CDE09G1155 Ceratophyllum demersum HOM05D006881 ORTHO05D008423 2.0e-27 126.3 102 68.6
Medtr2g437470 Medicago truncatula HOM05D006881 ORTHO05D008423 2.7e-27 125.9 108 64.8
Sc19g0005040 Simmondsia chinensis HOM05D006881 ORTHO05D008423 2.7e-27 125.9 123 60.2
FAN07G1171 Fragaria x ananassa HOM05D006881 ORTHO05D008423 3.5e-27 125.6 117 63.2
Nn3g21363 Nelumbo nucifera HOM05D006881 ORTHO05D008423 5.9e-27 124.8 85 77.6
CsaV3_3G014430 Cucumis sativus L. HOM05D006881 ORTHO05D008423 7.8e-27 124.4 162 59.3
HPP92_025214 Vanilla planifolia HOM05D006881 ORTHO05D008423 7.8e-27 124.4 110 65.5
HPP92_025226 Vanilla planifolia HOM05D006881 ORTHO05D008423 7.8e-27 124.4 110 65.5
BolC2t06902H Brassica oleracea HOM05D006881 ORTHO05D008423 1.0e-26 124.0 104 69.2
Hma1.2p1_0698F.1_g205340 Hydrangea macrophylla HOM05D006881 ORTHO05D008423 3.0e-26 122.5 85 76.5
MELO3C006643.2 Cucumis melo HOM05D006881 ORTHO05D008423 3.9e-26 122.1 113 60.2
Ah.13g074590 Amaranthus hybridus HOM05D006881 ORTHO05D008423 1.1e-25 120.6 126 57.9
Nitab4.5_0013689g0020 Nicotiana tabacum HOM05D006881 ORTHO05D008423 1.9e-25 119.8 87 71.3
ATR0706G047 Amborella trichopoda HOM05D006881 ORTHO05D008423 1.0e-23 114.0 117 58.1
BraA10t44166Z Brassica rapa HOM05D006881 ORTHO05D008423 1.4e-23 113.6 169 60.9
SMO367G0816 Selaginella moellendorffii HOM05D006881 ORTHO05D008423 4.0e-23 112.1 108 62.0
A10p21020 Brassica napus HOM05D006881 ORTHO05D008423 2.0e-22 109.8 167 58.7
SHI00284 Sapria himalayana HOM05D006881 ORTHO05D008423 3.4e-22 109.0 87 65.5
Mapoly0010s0048 Marchantia polymorpha HOM05D006881 ORTHO05D008423 2.2e-21 106.3 118 54.2
SEGI_11441 Sequoiadendron giganteum HOM05D006881 ORTHO05D008423 2.2e-21 106.3 117 53.0
Pp3c15_10020 Physcomitrium patens HOM05D006881 ORTHO05D008423 4.9e-21 105.1 111 56.8
TWI73G0635 Tripterygium wilfordii HOM05D006881 ORTHO05D008423 7.8e-19 97.8 86 60.5
Haze_01236 Corylus avellana HOM05D006881 ORTHO05D008423 8.6e-18 94.4 84 66.7
AUR62040384 Chenopodium quinoa HOM05D006881 ORTHO05D008423 1.2e-16 90.5 53 83.0
CDE02G3907 Ceratophyllum demersum HOM05D006881 ORTHO05D008423 1.1e-15 87.4 83 61.4
AagrBONN_evm.TU.Sc2ySwM_228.1971 Anthoceros agrestis HOM05D006881 ORTHO05D008423 3.4e-14 82.4 86 58.1
BcaB08g36664 Brassica carinata HOM05D006881 ORTHO05D008423 9.8e-14 80.9 162 48.8
BcaC04g18670 Brassica carinata HOM05D006881 ORTHO05D008423 7.1e-12 74.7 74 60.8
CBR_g46646 Chara braunii HOM05D006881 ORTHO05D008423 7.1e-12 74.7 85 54.1
C09p57950 Brassica napus HOM05D006881 ORTHO05D008423 3.9e-10 68.9 50 66.0
BolC9t58662H Brassica oleracea HOM05D006881 ORTHO05D008423 3.9e-10 68.9 50 66.0
Nitab4.5_0000784g0080 Nicotiana tabacum HOM05D006881 ORTHO05D008423 2.3e-07 59.7 160 43.8


User provided reference genes

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