Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009611 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 1.8e-114 416.0 218 100.0
Actinidia00352 Actinidia chinensis HOM05D005311 ORTHO05D006160 5.8e-81 304.7 224 72.8
Rhsim11G0150000 Rhododendron simsii HOM05D005311 ORTHO05D006160 3.2e-79 298.9 226 74.3
Actinidia02445 Actinidia chinensis HOM05D005311 ORTHO05D006160 5.1e-77 291.6 224 70.1
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 5.1e-69 265.0 227 66.1
TAR628G1269 Trochodendron aralioides HOM05D005311 ORTHO05D006160 1.1e-68 263.8 227 66.1
GSVIVG01037044001 Vitis vinifera HOM05D005311 ORTHO05D006160 2.8e-67 259.2 222 68.5
CiPaw.05G021200 Carya illinoinensis HOM05D005311 ORTHO05D006160 2.6e-65 252.7 224 64.7
TAR376G1236 Trochodendron aralioides HOM05D000442 ORTHO05D006160 4.5e-65 251.9 218 64.2
Thecc.02G120600 Theobroma cacao HOM05D005311 ORTHO05D006160 1.3e-64 250.4 226 61.9
Aqoxy5G01939 Aquilegia oxysepala HOM05D005311 ORTHO05D006160 6.4e-64 248.1 197 64.0
Manes.07G056400 Manihot esculenta HOM05D005311 ORTHO05D006160 6.4e-64 248.1 222 64.0
TWI14G0308 Tripterygium wilfordii HOM05D005311 ORTHO05D006160 8.4e-64 247.7 224 64.7
Gohir.D12G019000 Gossypium hirsutum HOM05D005311 ORTHO05D006160 3.2e-63 245.7 222 61.3
Gorai.008G019300 Gossypium raimondii HOM05D005311 ORTHO05D006160 3.2e-63 245.7 222 61.3
Gohir.A12G018400 Gossypium hirsutum HOM05D005311 ORTHO05D006160 4.2e-63 245.4 222 61.3
Lsat_1_v5_gn_9_113920 Lactuca sativa HOM05D005311 ORTHO05D006160 5.4e-63 245.0 221 64.7
Nn6g32054 Nelumbo nucifera HOM05D005311 ORTHO05D006160 5.4e-63 245.0 154 80.5
Glyma.10G255200 Glycine max HOM05D005311 ORTHO05D006160 7.1e-63 244.6 219 63.5
Atru.chr5.2262 Acer truncatum HOM05D005311 ORTHO05D006160 9.3e-63 244.2 220 62.7
TWI59G0049 Tripterygium wilfordii HOM05D005311 ORTHO05D006160 2.1e-62 243.0 222 62.2
Phvul.007G047500 Phaseolus vulgaris HOM05D005311 ORTHO05D006160 2.7e-62 242.7 220 62.3
COL.COLO4_32478 Corchorus olitorius HOM05D005311 ORTHO05D006160 3.5e-62 242.3 227 60.8
Cc02_g20120 Coffea canephora HOM05D005311 ORTHO05D006160 6.0e-62 241.5 230 60.0
Sopen01g049100 Solanum pennellii HOM05D005311 ORTHO05D006160 7.9e-62 241.1 220 61.4
Gohir.D02G203104 Gossypium hirsutum HOM05D005311 ORTHO05D006160 1.8e-61 240.0 227 59.5
Duzib052G0370 Durio zibethinus HOM05D005311 ORTHO05D006160 2.3e-61 239.6 221 61.5
Gohir.A03G180600 Gossypium hirsutum HOM05D005311 ORTHO05D006160 2.3e-61 239.6 220 61.8
Potri.009G084800 Populus trichocarpa HOM05D005311 ORTHO05D006160 2.3e-61 239.6 222 62.2
vmacro01940 Vaccinium macrocarpon HOM05D000211 ORTHO05D002517 2.3e-61 239.6 180 72.8
Lj9A337G44 Lonicera japonica HOM05D005311 ORTHO05D006160 3.0e-61 239.2 154 77.3
TAR625G0307 Trochodendron aralioides HOM05D005311 ORTHO05D006160 3.0e-61 239.2 228 61.0
Ciclev10029272m.g Citrus clementina HOM05D005311 ORTHO05D006160 5.1e-61 238.4 174 70.1
Solyc01g106790.3 Solanum lycopersicum HOM05D005311 ORTHO05D006160 6.7e-61 238.0 220 60.9
PGSC0003DMG400025735 Solanum tuberosum HOM05D005311 ORTHO05D006160 1.5e-60 236.9 220 60.0
ECA240G0703 Erigeron canadensis HOM05D005311 ORTHO05D006160 2.5e-60 236.1 220 62.3
Medtr1g105970 Medicago truncatula HOM05D005311 ORTHO05D006160 5.6e-60 235.0 224 59.4
arahy.Tifrunner.gnm1.ann1.KVB0K0 Arachis hypogaea HOM05D005311 ORTHO05D006160 9.6e-60 234.2 231 60.2
Gorai.005G229500 Gossypium raimondii HOM05D005311 ORTHO05D006160 9.6e-60 234.2 227 58.1
MSTRG.16668 Avicennia marina HOM05D005311 ORTHO05D006160 3.6e-59 232.3 219 62.1
QL11p029204 Quercus lobata HOM05D005311 ORTHO05D006160 4.8e-59 231.9 238 57.6
HanXRQChr15g0495651 Helianthus annuus HOM05D005311 ORTHO05D006160 1.1e-58 230.7 219 59.8
MD05G1106900 Malus domestica HOM05D005311 ORTHO05D006160 1.1e-58 230.7 224 59.8
Lalb_Chr21g0307981 Lupinus albus HOM05D005311 ORTHO05D006160 1.4e-58 230.3 224 58.5
MD10G1111900 Malus domestica HOM05D005311 ORTHO05D006160 1.4e-58 230.3 224 59.8
THA.LOC104815219 Tarenaya hassleriana HOM05D005311 ORTHO05D006160 6.9e-58 228.0 219 61.2
CAN.G606.76 Capsicum annuum HOM05D005311 ORTHO05D006160 9.0e-58 227.6 221 58.4
Ca_11020_v3 Cicer arietinum L. HOM05D005311 ORTHO05D006160 9.0e-58 227.6 222 59.5
Glyma.20G136100 Glycine max HOM05D005311 ORTHO05D006160 1.2e-57 227.3 219 59.8
arahy.Tifrunner.gnm1.ann1.QK2693 Arachis hypogaea HOM05D005311 ORTHO05D006160 2.0e-57 226.5 155 74.2
Nitab4.5_0009103g0020 Nicotiana tabacum HOM05D005311 ORTHO05D006160 4.5e-57 225.3 221 59.7
SalBow6G1857 Salvia bowleyana HOM05D005311 ORTHO05D006160 4.5e-57 225.3 222 59.0
Nitab4.5_0000772g0050 Nicotiana tabacum HOM05D005311 ORTHO05D006160 5.8e-57 224.9 221 60.2
VMungo0720G0066 Vigna mungo HOM05D005311 ORTHO05D006160 1.7e-56 223.4 154 74.7
Peaxi162Scf00016g03127 Petunia axillaris HOM05D005311 ORTHO05D006160 4.9e-56 221.9 218 57.8
FvH4_2g03130 Fragaria vesca HOM05D005311 ORTHO05D006160 8.4e-56 221.1 220 58.6
Migut.B00474 Erythranthe guttata HOM05D005311 ORTHO05D006160 1.1e-55 220.7 227 55.9
CANSAT25G3378 Cannabis sativa HOM05D005311 ORTHO05D006160 1.4e-55 220.3 223 57.0
Lalb_Chr02g0144871 Lupinus albus HOM05D005311 ORTHO05D006160 1.4e-55 220.3 227 56.4
Lj5g0014269 Lotus japonicus HOM05D005311 ORTHO05D006160 3.2e-55 219.2 220 57.7
Potri.001G289400 Populus trichocarpa HOM05D005311 ORTHO05D006160 4.2e-55 218.8 216 58.8
SGA_v2.0_scaffold32G12981 Striga asiatica HOM05D005311 ORTHO05D006160 4.2e-55 218.8 227 55.9
DCAR_021939 Daucus carota HOM05D005311 ORTHO05D006160 5.5e-55 218.4 149 76.5
Lsat_1_v5_gn_7_84560 Lactuca sativa HOM05D005311 ORTHO05D006160 1.6e-54 216.9 222 57.2
Eucgr.I02500 Eucalyptus grandis HOM05D005311 ORTHO05D006160 2.7e-54 216.1 175 68.0
Sed0009957 Sechium edule HOM05D005311 ORTHO05D006160 4.6e-54 215.3 227 55.1
FAN20G1889 Fragaria x ananassa HOM05D005311 ORTHO05D006160 1.0e-53 214.2 224 57.1
Cpa.g.sc106.28 Carica papaya HOM05D005311 ORTHO05D006160 1.3e-53 213.8 274 48.9
FAN24G0492 Fragaria x ananassa HOM05D005311 ORTHO05D006160 1.3e-53 213.8 224 57.1
Ah.01g024570 Amaranthus hybridus HOM05D005311 ORTHO05D006160 8.7e-53 211.1 224 57.6
FAN27G0024 Fragaria x ananassa HOM05D005311 ORTHO05D006160 8.7e-53 211.1 224 56.2
Sc18g0007330 Simmondsia chinensis HOM05D005311 ORTHO05D006160 1.9e-52 209.9 228 55.7
MELO3C018026.2 Cucumis melo HOM05D005311 ORTHO05D006160 2.5e-52 209.5 220 55.5
FAN15G1540 Fragaria x ananassa HOM05D005311 ORTHO05D006160 2.5e-52 209.5 216 57.4
AUR62030871 Chenopodium quinoa HOM05D005311 ORTHO05D006160 3.3e-52 209.1 221 56.6
AUR62027028 Chenopodium quinoa HOM05D005311 ORTHO05D006160 9.6e-52 207.6 218 56.9
Sabra16G0181000 Salix brachista HOM05D002370 ORTHO05D003878 1.3e-51 207.2 154 67.5
ATR0767G087 Amborella trichopoda HOM05D005311 ORTHO05D006160 1.6e-51 206.8 222 56.3
ECA236G2995 Erigeron canadensis HOM05D000211 ORTHO05D002517 1.6e-51 206.8 170 64.7
Lalb_Chr16g0376301 Lupinus albus HOM05D005311 ORTHO05D006160 2.1e-51 206.5 220 57.7
AL1G57590 Arabidopsis lyrata HOM05D005311 ORTHO05D006160 1.8e-50 203.4 220 55.5
Thhalv10011774m.g Eutrema salsugineum HOM05D005311 ORTHO05D006160 1.8e-50 203.4 217 54.4
AT1G50020 Arabidopsis thaliana HOM05D005311 ORTHO05D006160 2.4e-50 203.0 218 56.0
RcHm_v2.0_Chr6g0248001 Rosa chinensis HOM05D005311 ORTHO05D006160 4.0e-50 202.2 254 51.2
CARHR040130 Cardamine hirsuta HOM05D005311 ORTHO05D006160 6.9e-50 201.4 191 60.2
Sp1g36880 Schrenkiella parvula HOM05D005311 ORTHO05D006160 2.6e-49 199.5 219 54.8
Hund00418 Selenicereus undatus HOM05D005311 ORTHO05D006160 5.8e-49 198.4 219 55.3
BolC3t21257H Brassica oleracea HOM05D005311 ORTHO05D006160 2.9e-48 196.1 222 54.1
Carub.0001s3920 Capsella rubella HOM05D005311 ORTHO05D006160 2.9e-48 196.1 218 55.5
ClCG10G010010 Citrullus lanatus HOM05D005311 ORTHO05D006160 3.8e-48 195.7 158 66.5
Lj5A221T62 Lonicera japonica HOM05D005311 ORTHO05D006160 4.9e-48 195.3 143 72.0
Oeu037294.1 Olea europaea HOM05D005311 ORTHO05D006160 4.9e-48 195.3 144 70.1
PSO210G6612 Papaver somniferum HOM05D005311 ORTHO05D006160 1.1e-47 194.1 231 54.5
A08p03390 Brassica napus HOM05D005311 ORTHO05D006160 3.2e-47 192.6 220 54.1
PSO447G0012 Papaver somniferum HOM05D005311 ORTHO05D006160 4.2e-47 192.2 226 54.4
Prupe.8G151000 Prunus persica HOM05D005311 ORTHO05D006160 9.3e-47 191.0 182 63.7
C03p89430 Brassica napus HOM05D005311 ORTHO05D006160 1.6e-46 190.3 159 64.2
Dinv09534 Davidia involucrata HOM05D000211 ORTHO05D002517 3.5e-46 189.1 188 57.4
BraA08t32371Z Brassica rapa HOM05D005311 ORTHO05D006160 4.6e-46 188.7 220 52.7
HanXRQChr03g0073011 Helianthus annuus HOM05D005311 ORTHO05D006160 4.6e-46 188.7 225 54.7
Aa31LG10G4090 Aethionema arabicum HOM05D002370 ORTHO05D003878 2.3e-45 186.4 156 64.1
CsaV3_4G000050 Cucumis sativus L. HOM05D005311 ORTHO05D006160 2.3e-45 186.4 155 64.5
Duzib132G0391 Durio zibethinus HOM05D005311 ORTHO05D006160 8.7e-45 184.5 220 50.0
BcaB07g33454 Brassica carinata HOM05D005311 ORTHO05D006160 3.3e-44 182.6 213 54.5
BcaC08g43180 Brassica carinata HOM05D005311 ORTHO05D006160 5.7e-44 181.8 213 54.9
A06p03410 Brassica napus HOM05D005311 ORTHO05D006160 5.7e-44 181.8 213 54.0
BolC6t35609H Brassica oleracea HOM05D005311 ORTHO05D006160 5.7e-44 181.8 213 54.9
BraA06t23549Z Brassica rapa HOM05D005311 ORTHO05D006160 7.4e-44 181.4 213 54.0
C06p04800 Brassica napus HOM05D005311 ORTHO05D006160 6.3e-43 178.3 213 54.0
CDE02G2678 Ceratophyllum demersum HOM05D005427 ORTHO05D006160 6.9e-42 174.9 210 49.5
GSVIVG01009264001 Vitis vinifera HOM05D005311 ORTHO05D006160 1.5e-41 173.7 161 56.5
unitig_61.g26039 Utricularia gibba HOM05D005311 ORTHO05D006160 1.2e-38 164.1 164 54.3
Zm00001eb201730 Zea mays HOM05D005311 ORTHO05D006160 1.2e-38 164.1 160 57.5
CSS0025480 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 6.1e-38 161.8 155 65.2
Sabra09G0065400 Salix brachista HOM05D000308 ORTHO05D002517 1.8e-37 160.2 139 64.0
Psat6g210680 Pisum sativum HOM05D005311 ORTHO05D006160 3.0e-37 159.5 126 67.5
Os11g0549900 Oryza sativa ssp. japonica HOM05D005311 ORTHO05D006160 3.9e-37 159.1 152 57.2
arahy.Tifrunner.gnm1.ann1.YXS8EF Arachis hypogaea HOM05D005311 ORTHO05D006160 1.9e-36 156.8 141 61.7
TPR.G21150 Trifolium pratense HOM05D005311 ORTHO05D006160 2.5e-36 156.4 153 60.1
BcaB04g17278 Brassica carinata HOM05D005311 ORTHO05D006160 1.3e-35 154.1 138 60.9
EL10Ac9g22172 Beta vulgaris HOM05D005311 ORTHO05D006160 3.7e-35 152.5 180 55.0
unitig_60.g25463 Utricularia gibba HOM05D005311 ORTHO05D006160 1.5e-33 147.1 149 57.0
PGR142G3492 Punica granatum HOM05D005311 ORTHO05D006160 2.2e-32 143.3 176 51.1
vmacro22259 Vaccinium macrocarpon HOM05D005311 ORTHO05D006160 6.5e-32 141.7 139 58.3
Oeu025305.1 Olea europaea HOM05D005311 ORTHO05D006160 1.4e-31 140.6 113 69.9
Rhsim05G0093200 Rhododendron simsii HOM05D005311 ORTHO05D006160 2.3e-29 133.3 199 46.7
TAR365G0893 Trochodendron aralioides HOM05D005311 ORTHO05D006160 1.5e-28 130.6 151 57.6
Oeu037691.1 Olea europaea HOM05D005311 ORTHO05D006160 1.3e-27 127.5 95 71.6
Dinv16067 Davidia involucrata HOM05D005311 ORTHO05D006160 1.7e-27 127.1 131 58.0
CDE04G0288 Ceratophyllum demersum HOM05D005311 ORTHO05D006160 2.2e-27 126.7 87 70.1
SGA_v2.0_scaffold225G43064 Striga asiatica HOM05D005311 ORTHO05D006160 1.4e-26 124.0 149 53.7
SMO118G0105 Selaginella moellendorffii HOM05D005311 ORTHO05D006160 3.1e-26 122.9 188 40.4
arahy.Tifrunner.gnm1.ann1.YSC4AN Arachis hypogaea HOM05D005311 ORTHO05D006160 3.4e-25 119.4 140 48.6
Haze_10287 Corylus avellana HOM05D005311 ORTHO05D006160 4.5e-25 119.0 79 79.7
Pp3c9_20640 Physcomitrium patens HOM05D005311 ORTHO05D006160 2.9e-24 116.3 184 42.9
Cfa004693 Carpinus fangiana HOM05D005311 ORTHO05D006160 6.5e-24 115.2 87 72.4
arahy.Tifrunner.gnm1.ann1.6ZTX4G Arachis hypogaea HOM05D005311 ORTHO05D006160 1.1e-23 114.4 147 45.6
Mapoly0159s0003 Marchantia polymorpha HOM05D005311 ORTHO05D006160 1.5e-20 104.0 163 42.9
Dinv44912 Davidia involucrata HOM05D005311 ORTHO05D006160 3.3e-20 102.8 123 51.2
CDE02G0336 Ceratophyllum demersum HOM05D005311 ORTHO05D006160 9.7e-20 101.3 101 55.4
AagrBONN_evm.TU.Sc2ySwM_340.346 Anthoceros agrestis HOM05D005311 ORTHO05D006160 4.8e-19 99.0 187 38.5
HPP92_006035 Vanilla planifolia HOM05D005311 ORTHO05D006160 2.0e-17 93.6 128 50.8
arahy.Tifrunner.gnm1.ann1.HG6PX3 Arachis hypogaea HOM05D005311 ORTHO05D006160 4.2e-15 85.9 158 38.6
arahy.Tifrunner.gnm1.ann1.TC5M0Q Arachis hypogaea HOM05D005311 ORTHO05D006160 7.2e-15 85.1 130 40.8
Cre14.g614000 Chlamydomonas reinhardtii HOM05D005311 ORTHO05D006160 3.7e-11 72.8 88 43.2
CARHR113150 Cardamine hirsuta HOM05D005311 ORTHO05D006160 4.8e-11 72.4 51 74.5
SEGI_31449 Sequoiadendron giganteum HOM05D005311 ORTHO05D006160 2.4e-10 70.1 103 47.6
CBR_g12748 Chara braunii HOM05D000019 ORTHO05D000048 1.6e-09 67.4 71 50.7
CSS0010436 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 1.0e-08 64.7 42 76.2
MCO01G504 Micromonas commoda HOM05D005311 ORTHO05D006160 1.1e-07 61.2 175 30.3
PRCOL_00004960 Prasinoderma coloniale HOM05D005311 ORTHO05D006160 5.5e-07 58.9 160 31.9


User provided reference genes

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