Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009602 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 0.0e+00 2419.8 1240 100.0
Actinidia14666 Actinidia chinensis HOM05D004021 ORTHO05D003767 0.0e+00 1182.9 1320 54.5
Dinv30267 Davidia involucrata HOM05D004021 ORTHO05D003767 0.0e+00 1108.6 1324 51.8
Dinv14242 Davidia involucrata HOM05D004021 ORTHO05D003767 0.0e+00 1092.8 1322 51.7
Actinidia15734 Actinidia chinensis HOM05D004021 ORTHO05D003767 1.3e-299 1033.5 1243 50.8
Rhsim07G0152700 Rhododendron simsii HOM05D004021 ORTHO05D003767 8.4e-294 1014.2 1294 48.5
vmacro05366 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 7.2e-269 931.4 1311 45.3
QL12p029472 Quercus lobata HOM05D004021 ORTHO05D003767 4.3e-181 639.8 1341 36.5
Cfa013353 Carpinus fangiana HOM05D004021 ORTHO05D003767 1.0e-169 602.1 1340 34.8
Haze_21872 Corylus avellana HOM05D004021 ORTHO05D003767 1.6e-164 584.7 1393 33.6
CiPaw.07G205800 Carya illinoinensis HOM05D004021 ORTHO05D003767 8.2e-156 555.8 1345 34.9
TAR383G0364 Trochodendron aralioides HOM05D004021 ORTHO05D003767 6.3e-148 529.6 1456 32.7
Lj8A589G31 Lonicera japonica HOM05D004021 ORTHO05D003767 8.2e-148 529.3 1332 33.4
Potri.018G039500 Populus trichocarpa HOM05D004021 ORTHO05D003767 6.5e-145 519.6 1345 33.2
CiPaw.08G024400 Carya illinoinensis HOM05D004021 ORTHO05D003767 2.6e-141 507.7 1346 32.5
Thecc.09G042000 Theobroma cacao HOM05D004021 ORTHO05D003767 3.3e-141 507.3 1365 32.5
Manes.16G071666 Manihot esculenta HOM05D004021 ORTHO05D003767 2.8e-140 504.2 1358 32.8
Sabra06G0188100 Salix brachista HOM05D004021 ORTHO05D003767 3.7e-140 503.8 1324 33.2
Potri.006G240500 Populus trichocarpa HOM05D004021 ORTHO05D003767 4.8e-140 503.4 1345 32.5
Sabra18G0039500 Salix brachista HOM05D004021 ORTHO05D003767 8.2e-140 502.7 1343 32.6
GSVIVG01035651001 Vitis vinifera HOM05D004021 ORTHO05D003767 5.9e-138 496.5 1048 34.6
Ciclev10007267m.g Citrus clementina HOM05D004021 ORTHO05D003767 3.5e-130 470.7 1356 31.9
Duzib150G1483 Durio zibethinus HOM05D004021 ORTHO05D003767 5.9e-130 469.9 1364 31.3
RcHm_v2.0_Chr6g0305941 Rosa chinensis HOM05D004021 ORTHO05D003767 6.1e-127 459.9 1350 31.4
Prupe.1G450900 Prunus persica HOM05D004021 ORTHO05D003767 1.4e-126 458.8 1330 31.7
COL.COLO4_18677 Corchorus olitorius HOM05D004021 ORTHO05D003767 7.2e-120 436.4 1344 30.2
FAN20G2231 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.2e-117 429.1 1349 31.2
FAN15G2992 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.5e-117 428.7 1340 31.3
FAN27G1714 Fragaria x ananassa HOM05D004021 ORTHO05D003767 5.7e-117 426.8 1348 30.8
FvH4_2g35880 Fragaria vesca HOM05D004021 ORTHO05D003767 6.3e-116 423.3 1348 30.7
Duzib187G0651 Durio zibethinus HOM05D004021 ORTHO05D003767 2.4e-115 421.4 1355 31.0
CANSAT25G3821 Cannabis sativa HOM05D004021 ORTHO05D003767 1.2e-114 419.1 1404 30.3
Duzib168G2343 Durio zibethinus HOM05D004021 ORTHO05D003767 7.8e-114 416.4 1300 30.5
Gorai.001G027600 Gossypium raimondii HOM05D004021 ORTHO05D003767 5.6e-112 410.2 1363 30.7
Gohir.A07G023000 Gossypium hirsutum HOM05D004021 ORTHO05D003767 1.2e-109 402.5 1367 30.4
Gohir.A07G023100 Gossypium hirsutum HOM05D004021 ORTHO05D003767 8.9e-102 376.3 1335 30.0
Gorai.001G027700 Gossypium raimondii HOM05D004021 ORTHO05D003767 9.8e-101 372.9 1339 29.4
Gohir.D07G026700 Gossypium hirsutum HOM05D004021 ORTHO05D003767 5.4e-99 367.1 1334 29.7
Gohir.D07G026600 Gossypium hirsutum HOM05D004021 ORTHO05D003767 2.3e-97 361.7 1303 29.7
MD15G1096000 Malus domestica HOM05D004021 ORTHO05D003767 6.2e-95 353.6 1109 31.3
Peaxi162Scf00276g00210 Petunia axillaris HOM05D004021 ORTHO05D003767 4.9e-92 344.0 1288 29.4
MD08G1116300 Malus domestica HOM05D004021 ORTHO05D003767 1.4e-91 342.4 1336 29.6
Atru.chr7.2140 Acer truncatum HOM05D004021 ORTHO05D003767 3.3e-88 331.3 799 34.4
Nitab4.5_0000664g0250 Nicotiana tabacum HOM05D004021 ORTHO05D003767 5.8e-85 320.5 1311 29.4
Nitab4.5_0001567g0120 Nicotiana tabacum HOM05D004021 ORTHO05D003767 2.1e-82 312.0 1303 29.1
PGSC0003DMG401018585 Solanum tuberosum HOM05D004021 ORTHO05D003767 1.9e-80 305.4 1288 27.6
Nn2g11674 Nelumbo nucifera HOM05D004021 ORTHO05D003767 1.6e-79 302.4 1392 27.2
Glyma.06G083500 Glycine max HOM05D004021 ORTHO05D003767 4.4e-77 294.3 1294 26.9
Glyma.04G081800 Glycine max HOM05D004021 ORTHO05D003767 5.8e-77 293.9 1288 27.3
CAN.G309.87 Capsicum annuum HOM05D004021 ORTHO05D003767 4.9e-76 290.8 1284 27.6
Phvul.009G107600 Phaseolus vulgaris HOM05D004021 ORTHO05D003767 4.9e-76 290.8 1292 26.9
VMungo1309G0329 Vigna mungo HOM05D004021 ORTHO05D003767 4.9e-76 290.8 1291 27.7
arahy.Tifrunner.gnm1.ann1.QM1LQ0 Arachis hypogaea HOM05D004021 ORTHO05D003767 5.4e-75 287.3 1288 27.6
Nitab4.5_0000664g0210 Nicotiana tabacum HOM05D004021 ORTHO05D003767 2.7e-74 285.0 1312 28.3
Solyc11g071250.3 Solanum lycopersicum HOM05D004021 ORTHO05D003767 7.9e-74 283.5 1302 26.8
Sed0007846 Sechium edule HOM05D004021 ORTHO05D003767 1.7e-73 282.3 1318 26.6
Lj1g0012897 Lotus japonicus HOM05D004021 ORTHO05D003767 3.9e-73 281.2 1312 26.0
Sopen11g028940 Solanum pennellii HOM05D004021 ORTHO05D003767 2.5e-72 278.5 1302 26.7
Nitab4.5_0001567g0150 Nicotiana tabacum HOM05D004021 ORTHO05D003767 3.3e-72 278.1 1305 28.0
TWI63G0612 Tripterygium wilfordii HOM05D004021 ORTHO05D003767 1.6e-71 275.8 1297 26.5
CsaV3_3G048630 Cucumis sativus L. HOM05D004021 ORTHO05D003767 1.8e-70 272.3 1327 26.8
Medtr3g110132 Medicago truncatula HOM05D004021 ORTHO05D003767 4.2e-67 261.2 1253 26.6
TPR.G1392 Trifolium pratense HOM05D004021 ORTHO05D003767 5.4e-67 260.8 1275 26.4
Nn3g18104 Nelumbo nucifera HOM05D004021 ORTHO05D003767 3.3e-64 251.5 1373 26.5
MELO3C003457.2 Cucumis melo HOM05D004021 ORTHO05D003767 1.6e-63 249.2 1333 25.7
Psat5g022840 Pisum sativum HOM05D004021 ORTHO05D003767 3.7e-63 248.1 1281 26.2
Lalb_Chr11g0064441 Lupinus albus HOM05D004021 ORTHO05D003767 6.2e-63 247.3 1248 25.9
Medtr3g110082 Medicago truncatula HOM05D004021 ORTHO05D003767 4.5e-61 241.1 1256 26.1
Ca_15608_v3 Cicer arietinum L. HOM05D004021 ORTHO05D003767 5.5e-59 234.2 1275 26.0
Psat5g022920 Pisum sativum HOM05D004021 ORTHO05D003767 4.6e-58 231.1 1274 25.4
Lalb_Chr01g0011141 Lupinus albus HOM05D004021 ORTHO05D003767 4.3e-56 224.6 1289 25.3
Oeu012193.1 Olea europaea HOM05D004021 ORTHO05D003767 1.6e-55 222.6 1294 25.9
TAR626G0792 Trochodendron aralioides HOM05D004021 ORTHO05D003767 6.2e-55 220.7 588 32.5
ClCG11G015210 Citrullus lanatus HOM05D004021 ORTHO05D003767 4.5e-53 214.5 1037 27.1
Lalb_Chr08g0243171 Lupinus albus HOM05D004021 ORTHO05D003767 1.7e-52 212.6 1298 25.3
MSTRG.1655 Avicennia marina HOM05D004021 ORTHO05D003767 2.2e-52 212.2 1257 25.9
Oeu031555.1 Olea europaea HOM05D004021 ORTHO05D003767 1.3e-49 203.0 1278 25.9
MSTRG.14021 Avicennia marina HOM05D004021 ORTHO05D003767 2.3e-49 202.2 1269 25.3
Eucgr.C02901 Eucalyptus grandis HOM05D004021 ORTHO05D003767 3.9e-49 201.4 1305 24.8
THA.LOC104814779 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 1.1e-48 199.9 1307 25.9
SalBow1G4226 Salvia bowleyana HOM05D004021 ORTHO05D003767 7.4e-48 197.2 1144 26.1
THA.LOC104799199 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 1.3e-47 196.4 1308 24.5
MBI01_g30860_MAGBIO Magnolia biondii HOM05D004021 ORTHO05D003767 1.6e-47 196.1 1402 24.7
Peaxi162Scf00657g00058 Petunia axillaris HOM05D004021 ORTHO05D003767 1.4e-43 183.0 1247 24.8
DCAR_007709 Daucus carota HOM05D004021 ORTHO05D003767 1.9e-43 182.6 1250 23.4
Lj8P589T23 Lonicera japonica HOM05D004021 ORTHO05D003767 1.0e-41 176.8 559 31.8
CsaV3_2G030990 Cucumis sativus L. HOM05D004021 ORTHO05D003767 3.9e-41 174.9 1318 23.3
Hund03406 Selenicereus undatus HOM05D012164 ORTHO05D003767 3.9e-41 174.9 1219 24.9
MELO3C011152.2 Cucumis melo HOM05D004021 ORTHO05D003767 1.5e-40 172.9 1321 23.1
ClCG08G012320 Citrullus lanatus HOM05D004021 ORTHO05D003767 2.8e-39 168.7 1316 23.6
Sed0002796 Sechium edule HOM05D004021 ORTHO05D003767 4.8e-39 167.9 1206 24.0
Migut.E01516 Erythranthe guttata HOM05D004021 ORTHO05D003767 1.1e-38 166.8 1248 24.9
CSS0003638 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 6.9e-38 164.1 1107 24.7
Lalb_Chr11g0064431 Lupinus albus HOM05D004021 ORTHO05D003767 1.2e-37 163.3 1256 24.0
Cpa.g.sc7.255 Carica papaya HOM05D004021 ORTHO05D003767 1.5e-37 162.9 578 29.8
TAR626G0813 Trochodendron aralioides HOM05D004021 ORTHO05D003767 3.4e-37 161.8 263 41.8
SGA_v2.0_scaffold169G38653 Striga asiatica HOM05D004021 ORTHO05D003767 1.0e-36 160.2 1268 23.3
Lj8P589T28 Lonicera japonica HOM05D004021 ORTHO05D003767 1.4e-35 156.4 375 34.4
Aa31LG3G15670 Aethionema arabicum HOM05D004021 ORTHO05D003767 5.5e-35 154.5 1087 24.7
DCAR_003118 Daucus carota HOM05D004021 ORTHO05D003767 9.7e-32 143.7 1095 24.1
Nitab4.5_0000500g0270 Nicotiana tabacum HOM05D004021 ORTHO05D003767 1.3e-31 143.3 546 30.8
Nitab4.5_0002178g0010 Nicotiana tabacum HOM05D004021 ORTHO05D003767 3.7e-31 141.7 510 30.0
FAN02G4319 Fragaria x ananassa HOM05D004021 ORTHO05D003767 9.1e-30 137.1 436 30.7
FAN09G3084 Fragaria x ananassa HOM05D004021 ORTHO05D003767 9.1e-30 137.1 436 30.5
FAN20G1338 Fragaria x ananassa HOM05D004021 ORTHO05D003767 9.1e-30 137.1 436 30.5
PGR044G0442 Punica granatum HOM05D004021 ORTHO05D003767 3.5e-29 135.2 1385 22.7
PSO782G1327 Papaver somniferum HOM05D004021 ORTHO05D003767 1.3e-28 133.3 1048 23.1
Lj8A589T33 Lonicera japonica HOM05D004021 ORTHO05D003767 5.0e-28 131.3 216 40.7
SGA_v2.0_scaffold163G38081 Striga asiatica HOM05D004021 ORTHO05D003767 5.0e-28 131.3 1265 23.4
Dinv38014 Davidia involucrata HOM05D004021 ORTHO05D003767 8.5e-28 130.6 1261 22.5
AL6G22200 Arabidopsis lyrata HOM05D004021 ORTHO05D003767 7.2e-27 127.5 1322 24.1
SalBow4G0344 Salvia bowleyana HOM05D004021 ORTHO05D003767 7.2e-27 127.5 1252 22.8
Sp6g32070 Schrenkiella parvula HOM05D004021 ORTHO05D003767 7.2e-27 127.5 1308 24.2
EL10Ac2g04051 Beta vulgaris HOM05D012164 ORTHO05D003767 9.4e-27 127.1 1093 23.7
Atru.chr7.2139 Acer truncatum HOM05D004021 ORTHO05D003767 2.7e-26 125.6 285 34.4
BcaC03g13370 Brassica carinata HOM05D004021 ORTHO05D003767 8.0e-26 124.0 1248 23.7
C02p05090 Brassica napus HOM05D004021 ORTHO05D003767 8.0e-26 124.0 1248 23.7
AT5G11530 Arabidopsis thaliana HOM05D004021 ORTHO05D003767 1.4e-25 123.2 1300 23.8
Cpa.g.sc7.254 Carica papaya HOM05D004021 ORTHO05D003767 8.8e-25 120.6 115 50.4
Sc09g0009160 Simmondsia chinensis HOM05D012164 ORTHO05D003767 1.1e-24 120.2 1111 22.9
Cpa.g.sc7.256 Carica papaya HOM05D004021 ORTHO05D003767 9.7e-24 117.1 388 29.1
BolC2t06463H Brassica oleracea HOM05D004021 ORTHO05D003767 1.3e-23 116.7 1243 23.5
FAN13G2039 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.7e-23 116.3 315 31.7
arahy.Tifrunner.gnm1.ann1.E545QA Arachis hypogaea HOM05D004021 ORTHO05D003767 2.2e-23 115.9 1245 22.7
FAN20G0872 Fragaria x ananassa HOM05D004021 ORTHO05D003767 2.2e-23 115.9 329 30.4
Lsat_1_v5_gn_6_64101 Lactuca sativa HOM05D004021 ORTHO05D003767 3.7e-23 115.2 1239 22.2
CARHR201690 Cardamine hirsuta HOM05D004021 ORTHO05D003767 4.8e-23 114.8 1285 22.3
A02p01040 Brassica napus HOM05D004021 ORTHO05D003767 4.1e-22 111.7 1234 22.9
BraA02t05084Z Brassica rapa HOM05D004021 ORTHO05D003767 4.1e-22 111.7 1234 22.9
vmacro18883 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 7.0e-22 110.9 1281 22.1
Carub.0006s1000 Capsella rubella HOM05D004021 ORTHO05D003767 3.5e-21 108.6 1311 23.6
BolC3t13094H Brassica oleracea HOM05D004021 ORTHO05D003767 6.5e-20 104.4 1284 23.1
BcaNung01931 Brassica carinata HOM05D004021 ORTHO05D003767 1.1e-19 103.6 1268 23.6
ECA233G1986 Erigeron canadensis HOM05D004021 ORTHO05D003767 7.2e-19 100.9 1280 22.3
Oeu015740.1 Olea europaea HOM05D004021 ORTHO05D003767 2.1e-18 99.4 491 26.9
Hund19530 Selenicereus undatus HOM05D012164 ORTHO05D003767 1.8e-17 96.3 824 21.7
BraA03t09842Z Brassica rapa HOM05D004021 ORTHO05D003767 5.2e-17 94.7 1277 23.5
Nitab4.5_0000406g0040 Nicotiana tabacum HOM05D004021 ORTHO05D003767 5.2e-17 94.7 520 26.9
AUR62041723 Chenopodium quinoa HOM05D012164 ORTHO05D003767 1.2e-16 93.6 839 21.8
Migut.A00223 Erythranthe guttata HOM05D004021 ORTHO05D003767 1.2e-16 93.6 136 39.7
Lalb_Chr22g0352261 Lupinus albus HOM05D004021 ORTHO05D003767 2.0e-16 92.8 479 26.1
Thhalv10003568m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 4.4e-16 91.7 1275 22.8
Lalb_Chr24g0396931 Lupinus albus HOM05D004021 ORTHO05D003767 3.7e-15 88.6 277 26.4
Cc08_g09190 Coffea canephora HOM05D004021 ORTHO05D003767 8.3e-15 87.4 911 22.7
Ah.10g035100 Amaranthus hybridus HOM05D012164 ORTHO05D003767 4.1e-14 85.1 759 22.3
BcaB01g05477 Brassica carinata HOM05D004021 ORTHO05D003767 4.1e-14 85.1 360 25.8
C03p05810 Brassica napus HOM05D000602 ORTHO05D006896 2.7e-13 82.4 751 23.6
AUR62009309 Chenopodium quinoa HOM05D012164 ORTHO05D003767 1.7e-12 79.7 101 38.6
A03p05080 Brassica napus HOM05D000602 ORTHO05D006896 2.2e-12 79.3 345 26.4
Lalb_Chr14g0372341 Lupinus albus HOM05D004021 ORTHO05D003767 1.1e-11 77.0 140 35.0
Eucgr.E03518 Eucalyptus grandis HOM05D004021 ORTHO05D003767 2.5e-11 75.9 721 23.4
Thhalv10015703m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 7.2e-11 74.3 84 44.0
A06p36400 Brassica napus HOM05D004021 ORTHO05D003767 9.4e-11 73.9 82 45.1
BraA06t26563Z Brassica rapa HOM05D004021 ORTHO05D003767 9.4e-11 73.9 82 45.1
ATR0315G010 Amborella trichopoda HOM05D004021 ORTHO05D003767 2.1e-10 72.8 72 41.7
CDE05G1483 Ceratophyllum demersum HOM05D050580 ORTHO05D003767 2.7e-10 72.4 74 44.6
BcaNung03924 Brassica carinata HOM05D004021 ORTHO05D003767 6.1e-10 71.2 82 43.9
BolC7t44742H Brassica oleracea HOM05D004021 ORTHO05D003767 6.1e-10 71.2 82 43.9
C07p42110 Brassica napus HOM05D004021 ORTHO05D003767 1.0e-09 70.5 82 42.7
Dinv30474 Davidia involucrata HOM05D004021 ORTHO05D003767 1.0e-09 70.5 324 26.5
TAR626G1566 Trochodendron aralioides HOM05D004021 ORTHO05D003767 2.3e-09 69.3 368 27.7
Aa31LG11G4580 Aethionema arabicum HOM05D004021 ORTHO05D003767 4.0e-09 68.6 64 46.9
unitig_578.g16592 Utricularia gibba HOM05D004021 ORTHO05D003767 4.0e-09 68.6 109 42.2
Lsat_1_v5_gn_4_94561 Lactuca sativa HOM05D004021 ORTHO05D003767 6.8e-09 67.8 117 32.5
CDE05G1167 Ceratophyllum demersum HOM05D004021 ORTHO05D003767 8.8e-09 67.4 106 34.9
HanXRQChr09g0276591 Helianthus annuus HOM05D004021 ORTHO05D003767 1.5e-08 66.6 523 25.0
SHI18661 Sapria himalayana HOM05D004021 ORTHO05D003767 2.0e-08 66.2 520 25.0
HPP92_026866 Vanilla planifolia HOM05D004021 ORTHO05D003767 2.0e-08 66.2 68 42.6
Lj4g0004076 Lotus japonicus HOM05D032889 ORTHO05D003767 2.6e-08 65.9 444 22.7
Rhsim08G0224000 Rhododendron simsii HOM05D004021 ORTHO05D003767 3.4e-08 65.5 1124 21.3
Ah.16g105370 Amaranthus hybridus HOM05D012164 ORTHO05D003767 5.7e-08 64.7 125 30.4
SEGI_07029 Sequoiadendron giganteum HOM05D004021 ORTHO05D003767 5.7e-08 64.7 69 40.6
Glyma.17G195000 Glycine max HOM05D004021 ORTHO05D003767 1.3e-07 63.5 59 54.2
FAN05G2999 Fragaria x ananassa HOM05D004021 ORTHO05D003767 2.2e-07 62.8 273 27.8
VMungo0647G2380 Vigna mungo HOM05D058389 ORTHO05D003767 8.3e-07 60.8 60 46.7
unitig_26.g9789 Utricularia gibba HOM05D004021 ORTHO05D003767 1.8e-06 59.7 93 36.6
Aqoxy7G01578 Aquilegia oxysepala HOM05D065736 ORTHO05D038511 4.1e-06 58.5 143 29.4
unitig_85.g27153 Utricularia gibba HOM05D004021 ORTHO05D003767 4.1e-06 58.5 125 33.6
Os01g0229300 Oryza sativa ssp. japonica HOM05D018893 ORTHO05D020945 7.0e-06 57.8 56 46.4
CANSAT64G1952 Cannabis sativa HOM05D006994 ORTHO05D008229 9.2e-06 57.4 80 37.5


User provided reference genes

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