Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009570 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 0.0e+00 1279.2 712 100.0
CSS0002032 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 0.0e+00 1260.0 720 98.2
Dinv36695 Davidia involucrata HOM05D004485 ORTHO05D005485 1.2e-281 973.0 700 80.0
Actinidia09445 Actinidia chinensis HOM05D004485 ORTHO05D005485 1.9e-274 949.1 700 79.0
Actinidia17528 Actinidia chinensis HOM05D004485 ORTHO05D005485 2.4e-269 932.2 700 77.6
GSVIVG01015314001 Vitis vinifera HOM05D004485 ORTHO05D005485 5.4e-245 851.3 702 71.4
QL02p042072 Quercus lobata HOM05D004485 ORTHO05D005485 1.5e-242 843.2 698 71.8
Atru.chr7.1446 Acer truncatum HOM05D004485 ORTHO05D005485 1.2e-236 823.5 701 69.9
CiPaw.03G226100 Carya illinoinensis HOM05D004485 ORTHO05D005485 1.0e-235 820.5 700 69.9
TAR624G1325 Trochodendron aralioides HOM05D004485 ORTHO05D005485 7.3e-234 814.3 701 69.6
Nn8g39096 Nelumbo nucifera HOM05D004485 ORTHO05D005485 2.4e-232 809.3 701 68.3
Hma1.2p1_0571F.1_g180870 Hydrangea macrophylla HOM05D004485 ORTHO05D005485 9.0e-232 807.4 710 69.6
Thecc.09G101900 Theobroma cacao HOM05D004485 ORTHO05D005485 3.8e-230 802.0 696 69.5
CiPaw.04G158800 Carya illinoinensis HOM05D004485 ORTHO05D005485 1.4e-229 800.0 717 67.8
vmacro10859 Vaccinium macrocarpon HOM05D004485 ORTHO05D005485 1.9e-229 799.7 621 75.8
Prupe.7G221400 Prunus persica HOM05D004485 ORTHO05D005485 1.0e-227 793.9 745 65.8
Ciclev10007632m.g Citrus clementina HOM05D004485 ORTHO05D005485 1.9e-226 789.6 700 67.7
Duzib187G1416 Durio zibethinus HOM05D004485 ORTHO05D005485 5.6e-226 788.1 692 69.5
Potri.018G086600 Populus trichocarpa HOM05D004485 ORTHO05D005485 9.6e-226 787.3 700 67.4
Rhsim05G0040900 Rhododendron simsii HOM05D004485 ORTHO05D005485 1.8e-224 783.1 700 67.9
Gohir.D08G263700 Gossypium hirsutum HOM05D004485 ORTHO05D005485 3.1e-224 782.3 708 67.7
CANSAT56G2449 Cannabis sativa HOM05D004485 ORTHO05D005485 1.2e-223 780.4 698 68.3
MD15G1195100 Malus domestica HOM05D004485 ORTHO05D005485 1.4e-221 773.5 706 67.8
MD02G1064300 Malus domestica HOM05D004485 ORTHO05D005485 3.2e-221 772.3 705 67.8
Duzib168G0844 Durio zibethinus HOM05D004485 ORTHO05D005485 1.2e-220 770.4 700 67.1
Sabra18G0074900 Salix brachista HOM05D004485 ORTHO05D005485 2.7e-220 769.2 703 66.1
TWI34G0799 Tripterygium wilfordii HOM05D004485 ORTHO05D005485 3.3e-218 762.3 701 66.0
Solyc12g008390.3 Solanum lycopersicum HOM05D004485 ORTHO05D005485 4.8e-217 758.4 713 64.4
Eucgr.C01004 Eucalyptus grandis HOM05D004485 ORTHO05D005485 6.2e-217 758.1 701 65.2
Nitab4.5_0013389g0010 Nicotiana tabacum HOM05D004485 ORTHO05D005485 1.1e-216 757.3 750 62.8
Gohir.A06G066600 Gossypium hirsutum HOM05D004485 ORTHO05D005485 5.3e-216 755.0 700 66.0
Oeu053166.1 Olea europaea HOM05D004485 ORTHO05D005485 2.0e-215 753.1 700 66.3
Glyma.01G008900 Glycine max HOM05D004485 ORTHO05D005485 3.4e-215 752.3 700 65.7
Glyma.16G077500 Glycine max HOM05D004485 ORTHO05D005485 3.4e-215 752.3 700 65.9
Sopen12g003350 Solanum pennellii HOM05D004485 ORTHO05D005485 3.8e-214 748.8 713 64.0
Gohir.A08G242800 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.2e-212 743.8 708 65.0
Gohir.D06G065100 Gossypium hirsutum HOM05D004485 ORTHO05D005485 4.6e-212 741.9 700 65.4
Sc08g0007920 Simmondsia chinensis HOM05D004485 ORTHO05D005485 2.5e-210 736.1 705 64.3
FAN19G2910 Fragaria x ananassa HOM05D004485 ORTHO05D005485 2.4e-208 729.6 717 64.6
Manes.16G110100 Manihot esculenta HOM05D004485 ORTHO05D005485 2.4e-208 729.6 604 71.7
CsaV3_2G001970 Cucumis sativus L. HOM05D004485 ORTHO05D005485 4.1e-208 728.8 707 63.8
Haze_25812 Corylus avellana HOM05D004485 ORTHO05D005485 5.3e-208 728.4 646 68.7
Migut.K00530 Erythranthe guttata HOM05D004485 ORTHO05D005485 2.0e-207 726.5 702 63.5
Sed0011847 Sechium edule HOM05D004485 ORTHO05D005485 2.2e-206 723.0 728 62.4
MELO3C004583.2 Cucumis melo HOM05D004485 ORTHO05D005485 6.5e-206 721.5 704 63.2
CAN.G1642.10 Capsicum annuum HOM05D004485 ORTHO05D005485 1.9e-205 719.9 715 62.5
Gorai.004G281700 Gossypium raimondii HOM05D004485 ORTHO05D005485 2.1e-204 716.5 612 70.9
MSTRG.26380 Avicennia marina HOM05D004485 ORTHO05D005485 8.2e-201 704.5 703 61.7
Lalb_Chr14g0371821 Lupinus albus HOM05D004485 ORTHO05D005485 1.1e-200 704.1 702 62.7
EL10Ac8g18398 Beta vulgaris HOM05D004485 ORTHO05D005485 4.1e-200 702.2 703 61.9
PSO210G4150 Papaver somniferum HOM05D004485 ORTHO05D005485 9.4e-197 691.0 705 60.7
COL.COLO4_34764 Corchorus olitorius HOM05D004485 ORTHO05D005485 4.7e-196 688.7 700 62.9
Nitab4.5_0000566g0170 Nicotiana tabacum HOM05D004485 ORTHO05D005485 6.1e-196 688.3 721 61.0
Psat1g046640 Pisum sativum HOM05D004485 ORTHO05D005485 3.9e-195 685.6 704 61.5
ECA236G0540 Erigeron canadensis HOM05D004485 ORTHO05D005485 9.7e-194 681.0 726 59.1
Gorai.010G076200 Gossypium raimondii HOM05D004485 ORTHO05D005485 1.3e-193 680.6 729 59.5
Lalb_Chr24g0397331 Lupinus albus HOM05D004485 ORTHO05D005485 1.8e-192 676.8 703 61.7
ClCG11G002190 Citrullus lanatus HOM05D004485 ORTHO05D005485 3.4e-191 672.5 711 60.3
PSO210G3171 Papaver somniferum HOM05D004485 ORTHO05D005485 5.9e-191 671.8 704 59.5
PGR102G0995 Punica granatum HOM05D004485 ORTHO05D005485 2.1e-188 663.3 720 58.6
Phvul.004G170300 Phaseolus vulgaris HOM05D004485 ORTHO05D005485 2.7e-188 662.9 704 59.4
Lj2g0014691 Lotus japonicus HOM05D004485 ORTHO05D005485 1.4e-187 660.6 701 59.6
Thhalv10001922m.g Eutrema salsugineum HOM05D004485 ORTHO05D005485 2.0e-186 656.8 712 59.4
A09p12650 Brassica napus HOM05D004485 ORTHO05D005485 2.4e-184 649.8 725 57.4
VMungo0464G1472 Vigna mungo HOM05D004485 ORTHO05D005485 4.1e-184 649.0 703 59.2
MBI07_g22518_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 7.0e-184 648.3 708 59.3
BolC9t54403H Brassica oleracea HOM05D004485 ORTHO05D005485 1.6e-183 647.1 717 58.6
BraA09t36912Z Brassica rapa HOM05D004485 ORTHO05D005485 4.5e-183 645.6 725 57.1
C09p15010 Brassica napus HOM05D004485 ORTHO05D005485 1.3e-182 644.0 722 57.2
BcaNung04089 Brassica carinata HOM05D004485 ORTHO05D005485 8.5e-182 641.3 732 55.7
RcHm_v2.0_Chr2g0091661 Rosa chinensis HOM05D004485 ORTHO05D005485 8.5e-182 641.3 716 59.8
AT2G19950 Arabidopsis thaliana HOM05D004485 ORTHO05D005485 5.5e-181 638.6 705 59.9
Ca_25562_v3 Cicer arietinum L. HOM05D004485 ORTHO05D005485 1.2e-180 637.5 703 58.6
Carub.0003s3420 Capsella rubella HOM05D004485 ORTHO05D005485 1.8e-179 633.6 712 57.7
FAN26G2333 Fragaria x ananassa HOM05D004485 ORTHO05D005485 2.3e-179 633.3 717 59.1
FAN26G0748 Fragaria x ananassa HOM05D004485 ORTHO05D005485 4.0e-179 632.5 717 59.0
FvH4_1g05970 Fragaria vesca HOM05D004485 ORTHO05D005485 6.7e-179 631.7 717 58.7
AL3G48250 Arabidopsis lyrata HOM05D004485 ORTHO05D005485 8.8e-179 631.3 704 57.8
AUR62021427 Chenopodium quinoa HOM05D004485 ORTHO05D005485 1.2e-178 630.9 735 55.6
Lsat_1_v5_gn_8_96840 Lactuca sativa HOM05D004485 ORTHO05D005485 3.7e-177 625.9 765 55.4
FAN28G2435 Fragaria x ananassa HOM05D004485 ORTHO05D005485 4.1e-176 622.5 727 57.8
TPR.G21387 Trifolium pratense HOM05D004485 ORTHO05D005485 6.8e-171 605.1 703 56.5
Medtr6g088595 Medicago truncatula HOM05D004485 ORTHO05D005485 1.2e-170 604.4 707 56.0
HPP92_005563 Vanilla planifolia HOM05D004485 ORTHO05D005485 3.4e-170 602.8 475 71.4
Aqoxy7G03881 Aquilegia oxysepala HOM05D004485 ORTHO05D005485 5.7e-170 602.1 710 56.1
Peaxi162Scf00665g00331 Petunia axillaris HOM05D004485 ORTHO05D005485 7.5e-170 601.7 751 53.8
arahy.Tifrunner.gnm1.ann1.N3ID59 Arachis hypogaea HOM05D004485 ORTHO05D005485 1.3e-169 600.9 708 57.3
HanXRQChr12g0358161 Helianthus annuus HOM05D004485 ORTHO05D005485 1.3e-169 600.9 749 54.7
ATR0705G155 Amborella trichopoda HOM05D004485 ORTHO05D005485 5.4e-168 595.5 711 56.0
MBI01_g35400_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 9.1e-168 594.7 789 53.4
arahy.Tifrunner.gnm1.ann1.8771PM Arachis hypogaea HOM05D004485 ORTHO05D005485 5.0e-166 589.0 740 54.6
THA.LOC104820040 Tarenaya hassleriana HOM05D004485 ORTHO05D005485 2.5e-165 586.6 705 54.3
unitig_899.g15433 Utricularia gibba HOM05D004485 ORTHO05D005485 8.9e-163 578.2 705 53.3
FAN23G2550 Fragaria x ananassa HOM05D004485 ORTHO05D005485 1.7e-161 573.9 727 54.7
CARHR110390 Cardamine hirsuta HOM05D004485 ORTHO05D005485 4.1e-160 569.3 708 54.0
Os01g0744400 Oryza sativa ssp. japonica HOM05D004485 ORTHO05D005485 4.1e-160 569.3 715 51.5
Aa31LG8G16840 Aethionema arabicum HOM05D004485 ORTHO05D005485 2.3e-158 563.5 708 53.7
Zm00001eb153530 Zea mays HOM05D004485 ORTHO05D005485 2.9e-158 563.1 699 52.4
arahy.Tifrunner.gnm1.ann1.TC5UZA Arachis hypogaea HOM05D004485 ORTHO05D005485 1.9e-152 543.9 711 52.3
Cc06_g10330 Coffea canephora HOM05D004485 ORTHO05D005485 9.2e-152 541.6 519 64.2
SGA_v2.0_scaffold129G34191 Striga asiatica HOM05D004485 ORTHO05D005485 1.6e-151 540.8 380 79.2
CDE04G3494 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 2.3e-150 537.0 699 51.6
Zm00001eb371090 Zea mays HOM05D004485 ORTHO05D005485 6.6e-150 535.4 694 51.4
arahy.Tifrunner.gnm1.ann1.96JC9B Arachis hypogaea HOM05D004485 ORTHO05D005485 4.0e-147 526.2 710 51.8
Sp3g33270 Schrenkiella parvula HOM05D004485 ORTHO05D005485 6.8e-147 525.4 720 51.2
SEGI_40884 Sequoiadendron giganteum HOM05D004485 ORTHO05D005485 1.7e-145 520.8 711 49.5
Actinidia39786 Actinidia chinensis HOM05D004485 ORTHO05D005485 7.5e-138 495.4 420 71.7
BcaC04g22803 Brassica carinata HOM05D004485 ORTHO05D005485 1.4e-136 491.1 610 54.6
AUR62010900 Chenopodium quinoa HOM05D004485 ORTHO05D005485 2.7e-127 460.3 660 49.8
Ah.14g083300 Amaranthus hybridus HOM05D004485 ORTHO05D005485 1.5e-125 454.5 447 63.3
Hund29368 Selenicereus undatus HOM05D004485 ORTHO05D005485 1.3e-121 441.4 499 59.3
Hund29369 Selenicereus undatus HOM05D004485 ORTHO05D005485 1.1e-120 438.3 499 59.1
Oeu064194.1 Olea europaea HOM05D004485 ORTHO05D005485 4.6e-103 379.8 426 58.9
AagrBONN_evm.TU.Sc2ySwM_368.430 Anthoceros agrestis HOM05D004485 ORTHO05D005485 6.9e-99 365.9 732 40.4
Actinidia39785 Actinidia chinensis HOM05D004485 ORTHO05D005485 1.3e-92 345.1 227 84.6
DCAR_012046 Daucus carota HOM05D004485 ORTHO05D005485 6.5e-89 332.8 371 56.9
Oeu064192.1 Olea europaea HOM05D004485 ORTHO05D005485 1.5e-85 321.6 236 78.0
MBI07_g30871_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 4.7e-79 300.1 221 75.6
Cpa.g.sc40.63 Carica papaya HOM05D004485 ORTHO05D005485 3.9e-78 297.0 441 48.8
CDE02G0772 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 1.3e-76 292.0 231 72.7
Hund28808 Selenicereus undatus HOM05D004485 ORTHO05D005485 1.5e-74 285.0 209 76.1
Hund28810 Selenicereus undatus HOM05D004485 ORTHO05D005485 1.5e-74 285.0 209 76.1
Cc06_g10340 Coffea canephora HOM05D004485 ORTHO05D005485 1.0e-70 272.3 184 79.9
SMO356G0242 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 2.0e-66 258.1 593 38.1
Potri.006G164350 Populus trichocarpa HOM05D004485 ORTHO05D005485 6.8e-62 243.0 172 78.5
CBR_g39203 Chara braunii HOM05D004485 ORTHO05D005485 7.7e-58 229.6 428 39.7
Cpa.g.sc40.65 Carica papaya HOM05D004485 ORTHO05D005485 6.8e-54 216.5 132 84.8
SHI02696 Sapria himalayana HOM05D004485 ORTHO05D005485 7.5e-53 213.0 413 43.1
arahy.Tifrunner.gnm1.ann1.SL9UG3 Arachis hypogaea HOM05D004485 ORTHO05D005485 1.5e-40 172.2 324 43.5
SMO140G0037 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 5.8e-37 160.2 573 30.5
BcaC06g36663 Brassica carinata HOM05D004485 ORTHO05D005485 7.8e-34 149.8 243 44.4
Sc08g0007940 Simmondsia chinensis HOM05D004485 ORTHO05D005485 1.7e-33 148.7 200 52.5
SalBow3G4580 Salvia bowleyana HOM05D004485 ORTHO05D005485 4.3e-32 144.1 94 79.8
Cpa.g.sc40.64 Carica papaya HOM05D004485 ORTHO05D005485 6.2e-31 140.2 86 88.4
Rhsim05G0040800 Rhododendron simsii HOM05D000602 ORTHO05D001147 1.5e-29 135.6 189 54.0
Gohir.D04G126400 Gossypium hirsutum HOM05D004485 ORTHO05D005485 5.6e-24 117.1 70 90.0
Gohir.D05G357440 Gossypium hirsutum HOM05D004485 ORTHO05D005485 5.6e-24 117.1 70 90.0
Gohir.D05G357788 Gossypium hirsutum HOM05D004485 ORTHO05D005485 5.6e-24 117.1 70 90.0
A07p00710 Brassica napus HOM05D004485 ORTHO05D005485 2.1e-23 115.2 297 36.0
Gorai.003G091600 Gossypium raimondii HOM05D004485 ORTHO05D005485 3.6e-23 114.4 72 84.7
PGR102G1041 Punica granatum HOM05D004485 ORTHO05D005485 2.3e-22 111.7 202 44.6
Gohir.D01G081701 Gossypium hirsutum HOM05D004485 ORTHO05D005485 5.8e-21 107.1 70 87.1
HPP92_005577 Vanilla planifolia HOM05D004485 ORTHO05D005485 1.2e-13 82.8 65 66.2
ATR0693G380 Amborella trichopoda HOM05D004485 ORTHO05D005485 1.2e-10 72.8 79 55.7
C07p01440 Brassica napus HOM05D004485 ORTHO05D005485 1.0e-09 69.7 152 41.4
Cre12.g517500 Chlamydomonas reinhardtii HOM05D004485 ORTHO05D005485 5.6e-08 63.9 446 24.7
HanXRQChr10g0316161 Helianthus annuus HOM05D004485 ORTHO05D005485 4.8e-07 60.8 44 77.3
arahy.Tifrunner.gnm1.ann1.G8QSGL Arachis hypogaea HOM05D004485 ORTHO05D005485 4.0e-06 57.8 66 56.1
BraA07t27870Z Brassica rapa HOM05D004485 ORTHO05D005485 6.9e-06 57.0 64 57.8


User provided reference genes

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