Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009567 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 6.9e-117 424.1 231 100.0
Dinv14509 Davidia involucrata HOM05D004149 ORTHO05D005028 8.0e-97 357.5 230 83.0
Actinidia11575 Actinidia chinensis HOM05D004149 ORTHO05D005028 3.1e-93 345.5 235 81.3
Hma1.2p1_0479F.1_g161390 Hydrangea macrophylla HOM05D004149 ORTHO05D005028 4.5e-92 341.7 230 79.1
GSVIVG01011172001 Vitis vinifera HOM05D004149 ORTHO05D005028 1.7e-91 339.7 232 78.4
Nitab4.5_0000261g0010 Nicotiana tabacum HOM05D004149 ORTHO05D005028 2.1e-89 332.8 230 75.2
Rhsim05G0216800 Rhododendron simsii HOM05D004149 ORTHO05D005028 4.7e-89 331.6 232 78.0
QL07p035253 Quercus lobata HOM05D004149 ORTHO05D005028 1.4e-88 330.1 232 68.1
Nitab4.5_0002020g0030 Nicotiana tabacum HOM05D004149 ORTHO05D005028 5.2e-88 328.2 230 76.5
CiPaw.09G210500 Carya illinoinensis HOM05D004149 ORTHO05D005028 8.8e-88 327.4 231 75.3
Haze_21017 Corylus avellana HOM05D004149 ORTHO05D005028 2.6e-87 325.9 231 76.6
Cfa017194 Carpinus fangiana HOM05D004149 ORTHO05D005028 2.2e-86 322.8 231 75.8
PGSC0003DMG400004449 Solanum tuberosum HOM05D004149 ORTHO05D005028 2.2e-86 322.8 230 75.2
DCAR_018696 Daucus carota HOM05D004149 ORTHO05D005028 6.3e-86 321.2 231 76.6
Lsat_1_v5_gn_5_149460 Lactuca sativa HOM05D004149 ORTHO05D005028 6.3e-86 321.2 231 68.0
Sopen09g001490 Solanum pennellii HOM05D004149 ORTHO05D005028 1.4e-85 320.1 230 73.9
Cc06_g01230 Coffea canephora HOM05D004149 ORTHO05D005028 9.1e-85 317.4 232 71.6
Nn2g10866 Nelumbo nucifera HOM05D004149 ORTHO05D005028 5.9e-84 314.7 228 69.3
TAR633G0450 Trochodendron aralioides HOM05D004149 ORTHO05D005028 5.9e-84 314.7 230 75.7
CAN.G740.4 Capsicum annuum HOM05D004149 ORTHO05D005028 1.3e-83 313.5 231 69.7
Sed0021100 Sechium edule HOM05D004149 ORTHO05D005028 2.5e-82 309.3 223 67.3
SGA_v2.0_scaffold75G25021 Striga asiatica HOM05D004149 ORTHO05D005028 5.5e-82 308.1 236 71.2
Duzib168G0285 Durio zibethinus HOM05D004149 ORTHO05D005028 7.2e-82 307.8 231 72.3
Phvul.010G076100 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 9.5e-82 307.4 221 68.8
HanXRQChr13g0406611 Helianthus annuus HOM05D004149 ORTHO05D005028 2.1e-81 306.2 225 72.0
Migut.J00152 Erythranthe guttata HOM05D004149 ORTHO05D005028 3.6e-81 305.4 225 72.0
ClCG10G022210 Citrullus lanatus HOM05D004149 ORTHO05D005028 1.0e-80 303.9 241 63.1
CsaV3_3G033680 Cucumis sativus L. HOM05D004149 ORTHO05D005028 1.0e-80 303.9 230 64.3
MELO3C009158.2 Cucumis melo HOM05D004149 ORTHO05D005028 1.4e-80 303.5 230 63.9
Eucgr.B02246 Eucalyptus grandis HOM05D004149 ORTHO05D005028 1.8e-80 303.1 230 70.0
Lj3A951T30 Lonicera japonica HOM05D004149 ORTHO05D005028 1.8e-80 303.1 262 61.8
unitig_578.g15899 Utricularia gibba HOM05D004149 ORTHO05D005028 1.8e-80 303.1 235 65.1
ECA248G2679 Erigeron canadensis HOM05D000014 ORTHO05D000093 3.0e-80 302.4 229 69.0
Glyma.03G056500 Glycine max HOM05D004149 ORTHO05D005028 5.2e-80 301.6 227 66.5
arahy.Tifrunner.gnm1.ann1.CPEN6V Arachis hypogaea HOM05D004149 ORTHO05D005028 6.8e-80 301.2 230 74.3
Aqoxy4G02534 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 1.2e-79 300.4 233 72.5
Lj3g0002740 Lotus japonicus HOM05D004149 ORTHO05D005028 1.2e-79 300.4 228 72.4
Thecc.09G299600 Theobroma cacao HOM05D004149 ORTHO05D005028 4.4e-79 298.5 230 70.4
CARHR272500 Cardamine hirsuta HOM05D004149 ORTHO05D005028 9.8e-79 297.4 221 64.7
Potri.016G117600 Populus trichocarpa HOM05D004149 ORTHO05D005028 9.8e-79 297.4 221 67.4
Prupe.6G279000 Prunus persica HOM05D004149 ORTHO05D005028 1.7e-78 296.6 235 61.7
arahy.Tifrunner.gnm1.ann1.JHY1NE Arachis hypogaea HOM05D004149 ORTHO05D005028 2.2e-78 296.2 225 73.8
Carub.0008s1926 Capsella rubella HOM05D004149 ORTHO05D005028 4.9e-78 295.0 222 63.5
QL01p038648 Quercus lobata HOM05D004149 ORTHO05D005028 6.3e-78 294.7 224 71.9
VMungo0331G2046 Vigna mungo HOM05D004149 ORTHO05D005028 6.3e-78 294.7 221 66.5
Sabra16G0113700 Salix brachista HOM05D004149 ORTHO05D005028 1.1e-77 293.9 222 66.2
AL8G34910 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 1.4e-77 293.5 222 68.9
BraA10t43671Z Brassica rapa HOM05D004149 ORTHO05D005028 1.4e-77 293.5 223 64.1
Psat2g057600 Pisum sativum HOM05D004149 ORTHO05D005028 1.4e-77 293.5 226 71.7
A10p15620 Brassica napus HOM05D004149 ORTHO05D005028 1.8e-77 293.1 223 63.7
Manes.01G160400 Manihot esculenta HOM05D004149 ORTHO05D005028 1.8e-77 293.1 227 74.0
Thhalv10010643m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 2.4e-77 292.7 223 66.8
Sp6g20340 Schrenkiella parvula HOM05D004149 ORTHO05D005028 3.1e-77 292.4 222 63.1
TPR.G34577 Trifolium pratense HOM05D004149 ORTHO05D005028 3.1e-77 292.4 227 72.2
Medtr5g071240 Medicago truncatula HOM05D004149 ORTHO05D005028 4.1e-77 292.0 227 71.8
COL.COLO4_19178 Corchorus olitorius HOM05D004149 ORTHO05D005028 5.4e-77 291.6 220 71.4
AT5G58640 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 7.0e-77 291.2 223 69.5
Gohir.A09G089600 Gossypium hirsutum HOM05D004149 ORTHO05D005028 9.2e-77 290.8 220 70.5
Lalb_Chr10g0103381 Lupinus albus HOM05D004149 ORTHO05D005028 1.2e-76 290.4 224 75.0
C03p14190 Brassica napus HOM05D004149 ORTHO05D005028 1.6e-76 290.0 223 65.9
BolC3t13864H Brassica oleracea HOM05D004149 ORTHO05D005028 1.6e-76 290.0 223 63.2
Ca_20283_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 1.6e-76 290.0 225 71.6
Ciclev10029239m.g Citrus clementina HOM05D004149 ORTHO05D005028 2.0e-76 289.7 230 70.9
Sc22g0002520 Simmondsia chinensis HOM05D004149 ORTHO05D005028 2.0e-76 289.7 231 68.0
C09p50720 Brassica napus HOM05D004149 ORTHO05D005028 2.7e-76 289.3 222 63.5
BcaB01g04503 Brassica carinata HOM05D004149 ORTHO05D005028 3.5e-76 288.9 221 64.3
Haze_24342 Corylus avellana HOM05D004149 ORTHO05D005028 4.5e-76 288.5 230 69.6
Gohir.D09G089700 Gossypium hirsutum HOM05D004149 ORTHO05D005028 4.5e-76 288.5 220 70.9
Gorai.006G105900 Gossypium raimondii HOM05D004149 ORTHO05D005028 4.5e-76 288.5 229 69.4
MD03G1067200 Malus domestica HOM05D004149 ORTHO05D005028 4.5e-76 288.5 233 68.2
PGR102G2658 Punica granatum HOM05D004149 ORTHO05D005028 5.9e-76 288.1 230 69.6
Lalb_Chr04g0252201 Lupinus albus HOM05D004149 ORTHO05D005028 1.0e-75 287.3 235 68.9
Lalb_Chr07g0193651 Lupinus albus HOM05D004149 ORTHO05D005028 1.3e-75 287.0 230 61.7
PSO339G1238 Papaver somniferum HOM05D004149 ORTHO05D005028 1.3e-75 287.0 230 63.5
LjContig00155g0022980 Lotus japonicus HOM05D004149 ORTHO05D005028 1.7e-75 286.6 225 70.7
PSO384G4313 Papaver somniferum HOM05D004149 ORTHO05D005028 1.7e-75 286.6 230 63.5
A03p12090 Brassica napus HOM05D004149 ORTHO05D005028 5.0e-75 285.0 221 65.6
BraA03t10521Z Brassica rapa HOM05D004149 ORTHO05D005028 5.0e-75 285.0 221 65.6
Thhalv10014590m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 1.1e-74 283.9 222 61.7
BolC9t57922H Brassica oleracea HOM05D004149 ORTHO05D005028 2.5e-74 282.7 228 61.8
arahy.Tifrunner.gnm1.ann1.AG3942 Arachis hypogaea HOM05D004149 ORTHO05D005028 5.6e-74 281.6 222 70.7
Potri.009G047000 Populus trichocarpa HOM05D004149 ORTHO05D005028 5.6e-74 281.6 223 71.3
MD11G1071900 Malus domestica HOM05D004149 ORTHO05D005028 7.3e-74 281.2 235 68.5
arahy.Tifrunner.gnm1.ann1.43A4DE Arachis hypogaea HOM05D004149 ORTHO05D005028 1.2e-73 280.4 225 68.9
Cpa.g.sc112.1 Carica papaya HOM05D004149 ORTHO05D005028 6.1e-73 278.1 176 76.1
Aa31LG4G16110 Aethionema arabicum HOM05D004149 ORTHO05D005028 8.0e-73 277.7 250 57.2
EL10Ac5g12549 Beta vulgaris HOM05D004149 ORTHO05D005028 8.0e-73 277.7 230 64.8
Ah.12g058720 Amaranthus hybridus HOM05D004149 ORTHO05D005028 1.4e-72 276.9 231 66.7
ATR0681G135 Amborella trichopoda HOM05D004149 ORTHO05D005028 1.4e-72 276.9 231 65.8
FAN16G0525 Fragaria x ananassa HOM05D004149 ORTHO05D005028 6.8e-72 274.6 230 64.8
FAN25G1984 Fragaria x ananassa HOM05D004149 ORTHO05D005028 8.9e-72 274.2 230 64.3
RcHm_v2.0_Chr5g0070001 Rosa chinensis HOM05D004149 ORTHO05D005028 2.0e-71 273.1 233 65.7
Glyma.14G194500 Glycine max HOM05D004149 ORTHO05D005028 3.4e-71 272.3 239 67.4
AT3G47300 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 4.4e-71 271.9 211 64.5
FvH4_3g38810 Fragaria vesca HOM05D004149 ORTHO05D005028 4.4e-71 271.9 230 63.9
TWI31G0142 Tripterygium wilfordii HOM05D004149 ORTHO05D005028 4.4e-71 271.9 231 69.3
AL5G26480 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 5.8e-71 271.6 211 71.1
RcHm_v2.0_Chr3g0462841 Rosa chinensis HOM05D004149 ORTHO05D005028 7.5e-71 271.2 225 65.3
Psat7g245760 Pisum sativum HOM05D004149 ORTHO05D005028 9.8e-71 270.8 225 69.8
MD12G1168700 Malus domestica HOM05D004149 ORTHO05D005028 1.7e-70 270.0 234 55.1
Manes.09G107600 Manihot esculenta HOM05D004149 ORTHO05D005028 1.7e-70 270.0 206 67.5
Medtr4g015610 Medicago truncatula HOM05D004149 ORTHO05D005028 4.9e-70 268.5 226 70.4
Prupe.6G055700 Prunus persica HOM05D004149 ORTHO05D005028 6.4e-70 268.1 223 67.7
Potri.001G253000 Populus trichocarpa HOM05D004149 ORTHO05D005028 8.3e-70 267.7 230 67.4
Glyma.02G227600 Glycine max HOM05D004149 ORTHO05D005028 1.1e-69 267.3 241 65.6
VMungo0647G1724 Vigna mungo HOM05D004149 ORTHO05D005028 3.2e-69 265.8 241 65.1
Hund14286 Selenicereus undatus HOM05D004149 ORTHO05D005028 7.0e-69 264.6 226 65.0
Dinv14507 Davidia involucrata HOM05D011585 ORTHO05D005028 1.2e-68 263.8 142 87.3
Phvul.008G260400 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 1.6e-68 263.5 248 61.7
Sp5g14550 Schrenkiella parvula HOM05D004149 ORTHO05D005028 3.5e-68 262.3 221 64.3
CDE03G0191 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 6.0e-68 261.5 217 65.4
BcaC04g19825 Brassica carinata HOM05D004149 ORTHO05D005028 1.3e-67 260.4 175 69.7
FAN05G2859 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.3e-67 259.6 227 59.0
TPR.G13346 Trifolium pratense HOM05D004149 ORTHO05D005028 2.3e-67 259.6 221 65.6
FvH4_6g11300 Fragaria vesca HOM05D004149 ORTHO05D005028 3.0e-67 259.2 227 59.0
FAN14G0231 Fragaria x ananassa HOM05D004149 ORTHO05D005028 3.0e-67 259.2 227 59.0
FAN14G3883 Fragaria x ananassa HOM05D004149 ORTHO05D005028 3.0e-67 259.2 227 59.0
CDE04G2602 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 3.9e-67 258.8 217 59.0
Sabra09G0034400 Salix brachista HOM05D004149 ORTHO05D005028 1.9e-66 256.5 269 58.0
Lj2C73G10 Lonicera japonica HOM05D004149 ORTHO05D005028 2.5e-66 256.1 276 52.2
CANSAT54G2318 Cannabis sativa HOM05D004149 ORTHO05D005028 5.6e-66 255.0 264 56.1
Zm00001eb368380 Zea mays HOM05D004149 ORTHO05D005028 1.6e-65 253.4 223 56.1
Atru.chr3.4194 Acer truncatum HOM05D004149 ORTHO05D005028 2.8e-65 252.7 161 71.4
FAN09G2001 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.1e-64 250.8 227 57.7
Actinidia29092 Actinidia chinensis HOM05D004149 ORTHO05D005028 1.4e-64 250.4 184 70.1
Cfa011711 Carpinus fangiana HOM05D004149 ORTHO05D005028 1.8e-64 250.0 169 71.6
HPP92_017934 Vanilla planifolia HOM05D004149 ORTHO05D005028 8.9e-64 247.7 231 58.4
CiPaw.14G058300 Carya illinoinensis HOM05D004149 ORTHO05D005028 1.5e-63 246.9 197 71.6
Zm00001eb351750 Zea mays HOM05D004149 ORTHO05D005028 1.3e-62 243.8 239 53.1
Os01g0832200 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 2.2e-62 243.0 223 54.3
Os05g0467300 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 7.0e-61 238.0 258 52.3
SEGI_37457 Sequoiadendron giganteum HOM05D004149 ORTHO05D005028 3.5e-60 235.7 216 58.8
Peaxi162Scf00170g00124 Petunia axillaris HOM05D004149 ORTHO05D005028 7.8e-60 234.6 137 81.0
SHI31752 Sapria himalayana HOM05D004149 ORTHO05D005028 5.1e-59 231.9 242 52.9
Dinv03100 Davidia involucrata HOM05D004149 ORTHO05D005028 1.4e-56 223.8 133 79.7
MBI15_g14842_MAGBIO Magnolia biondii HOM05D004149 ORTHO05D005028 1.5e-55 220.3 142 71.8
AUR62030801 Chenopodium quinoa HOM05D004149 ORTHO05D005028 3.7e-54 215.7 243 50.6
AUR62030494 Chenopodium quinoa HOM05D004149 ORTHO05D005028 1.4e-53 213.8 146 70.5
FAN11G2604 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.4e-53 213.8 279 47.7
Ca_05615_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 4.6e-52 208.8 133 75.2
FAN21G1905 Fragaria x ananassa HOM05D004149 ORTHO05D005028 5.2e-48 195.3 140 68.6
CSS0016200 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 8.9e-48 194.5 130 74.6
Ciclev10013383m.g Citrus clementina HOM05D004149 ORTHO05D005028 1.5e-47 193.7 150 62.0
SMO358G0328 Selaginella moellendorffii HOM05D004149 ORTHO05D005028 4.9e-46 188.7 147 58.5
Psat7g245800 Pisum sativum HOM05D004149 ORTHO05D005028 1.9e-45 186.8 127 71.7
Carub.0005s1339 Capsella rubella HOM05D004149 ORTHO05D005028 2.7e-44 183.0 130 66.9
Solyc09g005590.3 Solanum lycopersicum HOM05D004149 ORTHO05D005028 1.6e-36 157.1 97 72.2
vmacro20289 Vaccinium macrocarpon HOM05D004149 ORTHO05D005028 2.1e-36 156.8 131 63.4
FAN02G4186 Fragaria x ananassa HOM05D004149 ORTHO05D005028 5.6e-34 148.7 238 43.3
Atru.chr8.2258 Acer truncatum HOM05D004149 ORTHO05D005028 1.3e-33 147.5 98 68.4
MD03G1067500 Malus domestica HOM05D004149 ORTHO05D005028 9.6e-26 121.3 97 67.0
Aqoxy2G00865 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 1.2e-23 114.4 186 36.0
MD04G1155500 Malus domestica HOM05D004149 ORTHO05D005028 1.5e-23 114.0 115 51.3
Solyc09g005580.4 Solanum lycopersicum HOM05D004149 ORTHO05D005028 2.5e-21 106.7 99 69.7
Sed0020125 Sechium edule HOM05D004149 ORTHO05D005028 1.3e-19 100.9 225 32.4
Cre14.g616950 Chlamydomonas reinhardtii HOM05D004149 ORTHO05D005028 5.1e-19 99.0 123 39.8
C07p23840 Brassica napus HOM05D004149 ORTHO05D005028 4.3e-18 95.9 77 58.4
PRCOL_00001680 Prasinoderma coloniale HOM05D004149 ORTHO05D005028 5.3e-16 89.0 116 40.5
GSVIVG01000345001 Vitis vinifera HOM05D000200 ORTHO05D011629 9.0e-16 88.2 90 67.8
GSVIVG01030787001 Vitis vinifera HOM05D004149 ORTHO05D005028 4.5e-15 85.9 95 66.3
GSVIVG01032328001 Vitis vinifera HOM05D004149 ORTHO05D005028 5.8e-15 85.5 95 60.0
MCO12G475 Micromonas commoda HOM05D004149 ORTHO05D005028 2.9e-14 83.2 140 31.4
CBR_g34707 Chara braunii HOM05D004149 ORTHO05D005028 1.1e-13 81.3 117 35.9
BcaB01g01543 Brassica carinata HOM05D004149 ORTHO05D039425 5.5e-13 79.0 77 51.9
MSTRG.19005 Avicennia marina HOM05D004149 ORTHO05D005028 2.1e-12 77.0 88 60.2
BcaC02g09351 Brassica carinata HOM05D004149 ORTHO05D094654 1.3e-09 67.8 116 37.9
BcaB06g29604 Brassica carinata HOM05D004149 ORTHO05D039425 2.6e-07 60.1 56 50.0


User provided reference genes

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