Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009549 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 4.9e-109 397.9 212 100.0
CSS0044421 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 2.1e-107 392.5 212 92.5
CSS0002095 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 1.1e-103 380.2 212 92.5
CSS0039995 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 9.2e-100 367.1 212 86.8
CSS0003854 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 2.8e-96 355.5 212 90.1
CSS0038157 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 4.6e-59 231.9 214 58.4
Hma1.2p1_0047F.1_g027910 Hydrangea macrophylla HOM05D003474 ORTHO05D003971 1.3e-58 230.3 214 57.0
Dinv13182 Davidia involucrata HOM05D003474 ORTHO05D003971 5.3e-55 218.4 178 62.9
Potri.007G092300 Populus trichocarpa HOM05D003474 ORTHO05D003971 5.3e-55 218.4 207 52.2
Lj4P889T19 Lonicera japonica HOM05D003474 ORTHO05D003971 4.5e-54 215.3 215 52.1
QL06p049618 Quercus lobata HOM05D003474 ORTHO05D003971 5.0e-53 211.8 214 53.7
Sabra07G0075900 Salix brachista HOM05D003474 ORTHO05D003971 1.1e-52 210.7 207 51.7
Sabra07G0076000 Salix brachista HOM05D003474 ORTHO05D003971 1.1e-52 210.7 207 51.7
Sabra07G0076200 Salix brachista HOM05D003474 ORTHO05D003971 1.4e-52 210.3 207 51.7
Sabra07G0076300 Salix brachista HOM05D003474 ORTHO05D003971 1.4e-52 210.3 207 51.7
Sabra07G0076100 Salix brachista HOM05D003474 ORTHO05D003971 3.2e-52 209.1 207 51.2
QL06p049633 Quercus lobata HOM05D003474 ORTHO05D003971 7.2e-52 208.0 215 53.0
Oeu002403.1 Olea europaea HOM05D003474 ORTHO05D003971 1.6e-51 206.8 212 50.9
Potri.005G076100 Populus trichocarpa HOM05D003474 ORTHO05D003971 1.6e-51 206.8 201 53.2
Cfa002670 Carpinus fangiana HOM05D003474 ORTHO05D003971 2.1e-51 206.5 217 53.9
Oeu056606.1 Olea europaea HOM05D003474 ORTHO05D003971 2.7e-51 206.1 212 53.8
Thecc.01G102400 Theobroma cacao HOM05D003474 ORTHO05D003971 1.0e-50 204.1 216 52.8
Nn5g30135 Nelumbo nucifera HOM05D003474 ORTHO05D003971 2.3e-50 203.0 215 50.7
Cc07_g15300 Coffea canephora HOM05D003474 ORTHO05D003971 5.1e-50 201.8 209 52.2
Ciclev10027277m.g Citrus clementina HOM05D003474 ORTHO05D003971 2.0e-49 199.9 217 53.5
RcHm_v2.0_Chr2g0114461 Rosa chinensis HOM05D003474 ORTHO05D003971 7.4e-49 198.0 218 49.1
Duzib187G1721 Durio zibethinus HOM05D003474 ORTHO05D003971 9.7e-49 197.6 220 49.5
QL06p049587 Quercus lobata HOM05D003474 ORTHO05D003971 9.7e-49 197.6 214 50.0
Nn1g05334 Nelumbo nucifera HOM05D003474 ORTHO05D003971 2.2e-48 196.4 215 50.2
TAR381G0511 Trochodendron aralioides HOM05D003474 ORTHO05D003971 2.8e-48 196.1 212 50.0
Rhsim08G0010000 Rhododendron simsii HOM05D003474 ORTHO05D003971 3.7e-48 195.7 208 52.9
Duzib147G1557 Durio zibethinus HOM05D003474 ORTHO05D003971 6.9e-47 191.4 210 51.9
FAN28G0803 Fragaria x ananassa HOM05D003474 ORTHO05D003971 9.1e-47 191.0 218 50.0
FvH4_1g20980 Fragaria vesca HOM05D003474 ORTHO05D003971 1.5e-46 190.3 218 48.6
Peaxi162Scf00611g00012 Petunia axillaris HOM05D003474 ORTHO05D003971 1.5e-46 190.3 221 48.0
FAN23G2065 Fragaria x ananassa HOM05D003474 ORTHO05D003971 3.4e-46 189.1 218 50.0
Gohir.A11G201900 Gossypium hirsutum HOM05D003474 ORTHO05D003971 3.4e-46 189.1 218 50.5
FAN26G3130 Fragaria x ananassa HOM05D003474 ORTHO05D003971 4.5e-46 188.7 218 50.5
CAN.G441.1 Capsicum annuum HOM05D003474 ORTHO05D003971 7.7e-46 188.0 216 49.1
COL.COLO4_09957 Corchorus olitorius HOM05D003474 ORTHO05D003971 1.3e-45 187.2 219 47.5
TWI74G0170 Tripterygium wilfordii HOM05D003474 ORTHO05D003971 1.3e-45 187.2 221 50.2
QL06p049593 Quercus lobata HOM05D003474 ORTHO05D003971 2.2e-45 186.4 214 48.6
CiPaw.03G141500 Carya illinoinensis HOM05D003474 ORTHO05D003971 2.9e-45 186.0 219 48.9
FAN19G2364 Fragaria x ananassa HOM05D003474 ORTHO05D003971 3.8e-45 185.7 218 48.2
Manes.12G135500 Manihot esculenta HOM05D003474 ORTHO05D003971 3.8e-45 185.7 213 46.5
CiPaw.04G099000 Carya illinoinensis HOM05D003474 ORTHO05D003971 8.5e-45 184.5 216 48.1
Prupe.6G186100 Prunus persica HOM05D003474 ORTHO05D003971 8.5e-45 184.5 208 47.1
Gohir.D11G221900 Gossypium hirsutum HOM05D003474 ORTHO05D003971 1.1e-44 184.1 210 48.1
Gorai.007G239100 Gossypium raimondii HOM05D003474 ORTHO05D003971 1.1e-44 184.1 210 49.5
RcHm_v2.0_Chr2g0114471 Rosa chinensis HOM05D003474 ORTHO05D003971 7.2e-44 181.4 222 45.9
TAR625G0209 Trochodendron aralioides HOM05D003474 ORTHO05D003971 3.6e-43 179.1 213 46.0
TAR625G1533 Trochodendron aralioides HOM05D003474 ORTHO05D003971 4.7e-43 178.7 212 47.2
Aqoxy6G00810 Aquilegia oxysepala HOM05D003474 ORTHO05D003971 3.0e-42 176.0 208 47.6
AUR62003788 Chenopodium quinoa HOM05D003474 ORTHO05D003971 2.6e-41 172.9 219 45.2
Cfa002671 Carpinus fangiana HOM05D003474 ORTHO05D003971 4.4e-41 172.2 215 48.4
SalBow5G3228 Salvia bowleyana HOM05D003474 ORTHO05D003971 2.2e-40 169.9 203 45.8
PGSC0003DMG400001891 Solanum tuberosum HOM05D003474 ORTHO05D003971 2.8e-40 169.5 216 45.8
AUR62002014 Chenopodium quinoa HOM05D003474 ORTHO05D003971 8.2e-40 167.9 219 43.8
Eucgr.I00429 Eucalyptus grandis HOM05D003474 ORTHO05D003971 1.4e-39 167.2 221 46.6
Eucgr.I00430 Eucalyptus grandis HOM05D003474 ORTHO05D003971 1.4e-39 167.2 221 46.6
SalBow5G0419 Salvia bowleyana HOM05D003474 ORTHO05D003971 1.8e-39 166.8 203 45.8
SalBow5G4466 Salvia bowleyana HOM05D003474 ORTHO05D003971 1.8e-39 166.8 203 45.8
Sed0016843 Sechium edule HOM05D003474 ORTHO05D003971 2.4e-39 166.4 210 46.2
Aqoxy6G00809 Aquilegia oxysepala HOM05D003474 ORTHO05D003971 7.0e-39 164.9 203 45.3
PGSC0003DMG400021798 Solanum tuberosum HOM05D003474 ORTHO05D003971 1.6e-38 163.7 213 45.5
EL10Ac6g15097 Beta vulgaris HOM05D003474 ORTHO05D003971 3.5e-38 162.5 212 42.9
Nitab4.5_0000104g0120 Nicotiana tabacum HOM05D003474 ORTHO05D003971 5.9e-38 161.8 156 57.7
MBI02_g08731_MAGBIO Magnolia biondii HOM05D003474 ORTHO05D003971 7.7e-38 161.4 204 43.6
Nitab4.5_0016805g0010 Nicotiana tabacum HOM05D003474 ORTHO05D003971 7.7e-38 161.4 157 56.7
ClCG01G018800 Citrullus lanatus HOM05D003474 ORTHO05D003971 1.7e-37 160.2 215 44.2
Nitab4.5_0000104g0070 Nicotiana tabacum HOM05D003474 ORTHO05D003971 1.7e-37 160.2 161 55.9
Atru.chr4.72 Acer truncatum HOM05D003474 ORTHO05D003971 2.2e-37 159.8 247 43.7
Atru.chr4.73 Acer truncatum HOM05D003474 ORTHO05D003971 2.2e-37 159.8 247 43.7
Lsat_1_v5_gn_5_43140 Lactuca sativa HOM05D003474 ORTHO05D003971 2.2e-37 159.8 210 41.4
Lsat_1_v5_gn_5_43240 Lactuca sativa HOM05D003474 ORTHO05D003971 2.2e-37 159.8 210 41.4
Cpa.g.sc213.15 Carica papaya HOM05D003474 ORTHO05D003971 8.5e-37 157.9 203 43.8
DCAR_003502 Daucus carota HOM05D003474 ORTHO05D003971 3.2e-36 156.0 209 41.6
Sopen03g021520 Solanum pennellii HOM05D003474 ORTHO05D003971 5.5e-36 155.2 213 44.1
Lsat_1_v5_gn_5_43320 Lactuca sativa HOM05D003474 ORTHO05D003971 7.2e-36 154.8 210 41.0
Atru.chr4.70 Acer truncatum HOM05D003474 ORTHO05D003971 9.4e-36 154.5 244 45.1
Lsat_1_v5_gn_5_43280 Lactuca sativa HOM05D003474 ORTHO05D003971 1.6e-35 153.7 210 40.0
Solyc03g078620.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 2.1e-35 153.3 217 44.2
Ah.02g122460 Amaranthus hybridus HOM05D003474 ORTHO05D003971 2.7e-35 152.9 221 43.0
SalBow3G2422 Salvia bowleyana HOM05D003474 ORTHO05D003971 3.6e-35 152.5 210 43.8
Actinidia28867 Actinidia chinensis HOM05D003474 ORTHO05D003971 4.7e-35 152.1 185 49.7
Haze_24940 Corylus avellana HOM05D003474 ORTHO05D003971 4.7e-35 152.1 175 50.3
Lsat_1_v5_gn_5_43380 Lactuca sativa HOM05D003474 ORTHO05D003971 4.7e-35 152.1 210 41.4
ECA246G4897 Erigeron canadensis HOM05D003474 ORTHO05D003971 3.0e-34 149.4 215 37.7
PSO781G0304 Papaver somniferum HOM05D003474 ORTHO05D003971 1.1e-33 147.5 211 40.3
DCAR_003501 Daucus carota HOM05D003474 ORTHO05D003971 2.0e-33 146.7 148 47.3
CsaV3_6G045460 Cucumis sativus L. HOM05D003474 ORTHO05D003971 1.3e-32 144.1 214 42.5
CANSAT01G1468 Cannabis sativa HOM05D003474 ORTHO05D003971 4.8e-32 142.1 226 41.6
Sabra07G0076400 Salix brachista HOM05D003474 ORTHO05D003971 4.8e-32 142.1 199 40.7
QL06p049605 Quercus lobata HOM05D003474 ORTHO05D003971 6.3e-32 141.7 111 65.8
THA.LOC104804926 Tarenaya hassleriana HOM05D003474 ORTHO05D003971 6.3e-32 141.7 208 38.5
Sabra05G0062700 Salix brachista HOM05D003474 ORTHO05D003971 8.2e-32 141.4 177 46.3
DCAR_003503 Daucus carota HOM05D003474 ORTHO05D003971 1.4e-31 140.6 186 41.9
CANSAT01G0924 Cannabis sativa HOM05D003474 ORTHO05D003971 2.4e-31 139.8 222 40.1
PSO781G0331 Papaver somniferum HOM05D003474 ORTHO05D003971 5.3e-31 138.7 218 37.2
SalBow5G5729 Salvia bowleyana HOM05D003474 ORTHO05D003971 7.0e-31 138.3 186 43.5
Migut.L00118 Erythranthe guttata HOM05D003474 ORTHO05D003971 9.1e-31 137.9 210 41.9
Lsat_1_v5_gn_5_43760 Lactuca sativa HOM05D003474 ORTHO05D003971 1.2e-30 137.5 224 41.1
PSO781G0183 Papaver somniferum HOM05D003474 ORTHO05D003971 2.0e-30 136.7 218 37.2
A10p27350 Brassica napus HOM05D003474 ORTHO05D003971 4.5e-30 135.6 218 40.8
Sp6g33190 Schrenkiella parvula HOM05D003474 ORTHO05D003971 1.0e-29 134.4 218 40.8
PSO781G0184 Papaver somniferum HOM05D003474 ORTHO05D003971 1.3e-29 134.0 215 36.3
Migut.H02362 Erythranthe guttata HOM05D003474 ORTHO05D003971 2.2e-29 133.3 225 38.2
AL8G42540 Arabidopsis lyrata HOM05D003474 ORTHO05D003971 3.8e-29 132.5 210 37.6
Thhalv10005637m.g Eutrema salsugineum HOM05D003474 ORTHO05D003971 3.8e-29 132.5 208 38.5
PSO541G6092 Papaver somniferum HOM05D003474 ORTHO05D003971 3.8e-29 132.5 218 35.8
Psat5g089920 Pisum sativum HOM05D003474 ORTHO05D003971 5.0e-29 132.1 212 37.3
Sp2g28110 Schrenkiella parvula HOM05D003474 ORTHO05D003971 6.5e-29 131.7 208 38.9
TPR.G17834 Trifolium pratense HOM05D003474 ORTHO05D003971 8.5e-29 131.3 212 38.2
AT5G10210 Arabidopsis thaliana HOM05D003474 ORTHO05D003971 1.1e-28 131.0 220 40.0
BcaB08g37131 Brassica carinata HOM05D003474 ORTHO05D003971 1.5e-28 130.6 217 39.2
TPR.G17845 Trifolium pratense HOM05D003474 ORTHO05D003971 4.2e-28 129.0 212 39.2
BcaC04g19322 Brassica carinata HOM05D003474 ORTHO05D003971 5.5e-28 128.6 218 39.4
C09p67210 Brassica napus HOM05D003474 ORTHO05D003971 5.5e-28 128.6 218 39.4
BraA10t44786Z Brassica rapa HOM05D003474 ORTHO05D003971 5.5e-28 128.6 218 39.0
Medtr3g087278 Medicago truncatula HOM05D003474 ORTHO05D003971 9.4e-28 127.9 211 39.8
CARHR293740 Cardamine hirsuta HOM05D003474 ORTHO05D003971 1.2e-27 127.5 207 36.7
Ca_16532_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 1.2e-27 127.5 211 37.9
Thhalv10014734m.g Eutrema salsugineum HOM05D003474 ORTHO05D003971 1.2e-27 127.5 218 39.4
Ca_16531_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 1.6e-27 127.1 211 37.4
TPR.G17847 Trifolium pratense HOM05D003474 ORTHO05D003971 1.6e-27 127.1 213 37.6
AT5G65030 Arabidopsis thaliana HOM05D003474 ORTHO05D003971 2.1e-27 126.7 210 36.7
Glyma.18G017500 Glycine max HOM05D003474 ORTHO05D003971 2.1e-27 126.7 220 41.8
Ca_16533_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 2.7e-27 126.3 211 37.4
Medtr3g087280 Medicago truncatula HOM05D003474 ORTHO05D003971 2.7e-27 126.3 212 37.3
Sc16g0005640 Simmondsia chinensis HOM05D003474 ORTHO05D003971 2.7e-27 126.3 215 39.5
TPR.G17848 Trifolium pratense HOM05D003474 ORTHO05D003971 2.7e-27 126.3 212 37.7
Carub.0008s2587 Capsella rubella HOM05D003474 ORTHO05D003971 3.6e-27 125.9 207 37.2
Psat5g089800 Pisum sativum HOM05D003474 ORTHO05D003971 6.1e-27 125.2 210 41.0
VMungo1383G0909 Vigna mungo HOM05D003474 ORTHO05D003971 6.1e-27 125.2 217 38.7
Ca_16530_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 8.0e-27 124.8 211 37.4
PGR004G1795 Punica granatum HOM05D003474 ORTHO05D003971 8.0e-27 124.8 217 37.8
BolC9t59492H Brassica oleracea HOM05D003474 ORTHO05D003971 1.0e-26 124.4 218 38.5
AL6G20700 Arabidopsis lyrata HOM05D003474 ORTHO05D003971 1.8e-26 123.6 218 37.2
BcaC01g02734 Brassica carinata HOM05D003474 ORTHO05D003971 1.8e-26 123.6 207 33.3
C03p61160 Brassica napus HOM05D003474 ORTHO05D003971 1.8e-26 123.6 207 33.3
BolC3t18376H Brassica oleracea HOM05D003474 ORTHO05D003971 1.8e-26 123.6 207 33.3
Carub.0006s0867 Capsella rubella HOM05D003474 ORTHO05D003971 2.3e-26 123.2 217 37.3
Medtr3g087270 Medicago truncatula HOM05D003474 ORTHO05D003971 3.0e-26 122.9 211 38.9
BcaB02g09856 Brassica carinata HOM05D003474 ORTHO05D003971 5.2e-26 122.1 208 35.1
Psat5g089880 Pisum sativum HOM05D003474 ORTHO05D003971 5.2e-26 122.1 213 35.7
SalBow5G1505 Salvia bowleyana HOM05D003474 ORTHO05D003971 5.2e-26 122.1 106 55.7
Lj6g0012852 Lotus japonicus HOM05D003474 ORTHO05D003971 6.8e-26 121.7 216 36.1
Psat5g089720 Pisum sativum HOM05D003474 ORTHO05D003971 8.8e-26 121.3 213 34.3
Lj6g0019645 Lotus japonicus HOM05D003474 ORTHO05D003971 2.6e-25 119.8 214 36.0
Medtr3g087330 Medicago truncatula HOM05D003474 ORTHO05D003971 2.6e-25 119.8 211 40.8
Psat5g089840 Pisum sativum HOM05D003474 ORTHO05D003971 2.6e-25 119.8 213 36.2
CARHR203080 Cardamine hirsuta HOM05D003474 ORTHO05D003971 3.4e-25 119.4 214 36.0
BraA06t26118Z Brassica rapa HOM05D003474 ORTHO05D003971 4.4e-25 119.0 207 33.8
Lj6g0005521 Lotus japonicus HOM05D003474 ORTHO05D003971 4.4e-25 119.0 214 36.4
Medtr3g087275 Medicago truncatula HOM05D003474 ORTHO05D003971 4.4e-25 119.0 213 36.6
Medtr3g087325 Medicago truncatula HOM05D003474 ORTHO05D003971 5.7e-25 118.6 213 39.4
DCAR_003504 Daucus carota HOM05D003474 ORTHO05D003971 1.3e-24 117.5 178 38.8
Glyma.11G239900 Glycine max HOM05D003474 ORTHO05D003971 1.7e-24 117.1 221 40.7
ClCG01G018790 Citrullus lanatus HOM05D003474 ORTHO05D003971 4.8e-24 115.5 217 39.2
Lalb_Chr08g0231071 Lupinus albus HOM05D003474 ORTHO05D003971 4.1e-23 112.5 223 38.1
SalBow5G3492 Salvia bowleyana HOM05D003474 ORTHO05D003971 5.4e-23 112.1 152 43.4
Lalb_Chr23g0277351 Lupinus albus HOM05D003474 ORTHO05D003971 2.0e-22 110.2 223 36.8
TPR.G17829 Trifolium pratense HOM05D003474 ORTHO05D003971 2.7e-22 109.8 212 37.7
TPR.G17835 Trifolium pratense HOM05D003474 ORTHO05D003971 2.7e-22 109.8 211 38.9
Lalb_Chr08g0231081 Lupinus albus HOM05D003474 ORTHO05D003971 4.5e-22 109.0 215 36.3
PGSC0003DMG400001890 Solanum tuberosum HOM05D003474 ORTHO05D003971 5.9e-22 108.6 148 43.2
Nitab4.5_0006517g0020 Nicotiana tabacum HOM05D003474 ORTHO05D003971 1.0e-21 107.8 155 45.8
CANSAT73G0001 Cannabis sativa HOM05D003474 ORTHO05D003971 2.2e-21 106.7 221 33.9
A06p31850 Brassica napus HOM05D003474 ORTHO05D003971 2.9e-21 106.3 149 36.9
Solyc04g055140.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 8.5e-21 104.8 152 41.4
Aa31LG3G16930 Aethionema arabicum HOM05D003474 ORTHO05D003971 1.5e-20 104.0 214 36.0
Solyc04g055150.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 9.4e-20 101.3 152 41.4
Sopen04g025010 Solanum pennellii HOM05D003474 ORTHO05D003971 1.2e-19 100.9 145 40.7
Peaxi162Scf00212g00111 Petunia axillaris HOM05D003474 ORTHO05D003971 1.4e-18 97.4 80 61.2
Sopen04g025000 Solanum pennellii HOM05D003474 ORTHO05D003971 1.5e-17 94.0 148 40.5
Peaxi162Scf00212g00105 Petunia axillaris HOM05D003474 ORTHO05D003971 4.4e-17 92.4 144 42.4
Solyc04g055130.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 1.7e-16 90.5 142 38.7
TPR.G17838 Trifolium pratense HOM05D003474 ORTHO05D003971 1.7e-16 90.5 210 31.0
Phvul.001G251900 Phaseolus vulgaris HOM05D003474 ORTHO05D003971 8.3e-16 88.2 186 32.3
SEGI_20067 Sequoiadendron giganteum HOM05D003474 ORTHO05D003971 1.1e-15 87.8 132 39.4
Medtr3g087300 Medicago truncatula HOM05D003474 ORTHO05D003971 3.1e-15 86.3 207 30.0
PGSC0003DMG400001892 Solanum tuberosum HOM05D003474 ORTHO05D003971 4.1e-15 85.9 139 38.8
Zm00001eb109720 Zea mays HOM05D003474 ORTHO05D003971 4.5e-14 82.4 119 35.3
SEGI_16345 Sequoiadendron giganteum HOM05D000003 ORTHO05D000004 1.3e-13 80.9 206 31.1
BcaB08g37129 Brassica carinata HOM05D003474 ORTHO05D003971 8.6e-13 78.2 97 44.3
Nitab4.5_0000897g0040 Nicotiana tabacum HOM05D003474 ORTHO05D003971 7.3e-12 75.1 108 38.9
BcaC04g19323 Brassica carinata HOM05D003474 ORTHO05D003971 1.8e-10 70.5 88 43.2
MELO3C007759.2 Cucumis melo HOM05D003474 ORTHO05D003971 5.2e-10 68.9 149 36.2


User provided reference genes

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