Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009543 Camellia sinensis var. sinensis HOM05D007446 ORTHO05D009376 4.4e-40 167.5 87 100.0
vmacro22147 Vaccinium macrocarpon HOM05D007446 ORTHO05D009376 7.3e-35 150.2 87 89.7
Hma1.2p1_0869F.1_g230750 Hydrangea macrophylla HOM05D007446 ORTHO05D009376 1.2e-34 149.4 84 91.7
Rhsim10G0209600 Rhododendron simsii HOM05D007446 ORTHO05D009376 2.1e-34 148.7 88 88.6
CiPaw.08G130000 Carya illinoinensis HOM05D007446 ORTHO05D009376 3.6e-34 147.9 88 89.8
GSVIVG01018747001 Vitis vinifera HOM05D007446 ORTHO05D009376 8.0e-34 146.7 85 89.4
Actinidia17426 Actinidia chinensis HOM05D007446 ORTHO05D009376 1.8e-33 145.6 88 88.6
Potri.005G111900 Populus trichocarpa HOM05D007446 ORTHO05D009376 1.8e-33 145.6 88 89.8
TWI09G0145 Tripterygium wilfordii HOM05D007446 ORTHO05D009376 1.8e-33 145.6 88 87.5
ClCG01G020420 Citrullus lanatus HOM05D007446 ORTHO05D009376 2.3e-33 145.2 88 86.4
Manes.02G106000 Manihot esculenta HOM05D007446 ORTHO05D009376 4.0e-33 144.4 88 87.5
Sabra05G0091700 Salix brachista HOM05D007446 ORTHO05D009376 5.2e-33 144.1 88 88.6
TWI73G1016 Tripterygium wilfordii HOM05D007446 ORTHO05D009376 8.9e-33 143.3 88 85.2
EL10Ac6g15495 Beta vulgaris HOM05D007446 ORTHO05D009376 1.2e-32 142.9 88 85.2
Lj4g0002006 Lotus japonicus HOM05D007446 ORTHO05D009376 1.2e-32 142.9 88 84.1
Atru.chr3.842 Acer truncatum HOM05D007446 ORTHO05D009376 1.5e-32 142.5 88 85.2
Cc07_g11000 Coffea canephora HOM05D007446 ORTHO05D009376 1.5e-32 142.5 88 81.8
Prupe.7G170900 Prunus persica HOM05D007446 ORTHO05D009376 1.5e-32 142.5 85 85.9
Lalb_Chr05g0229761 Lupinus albus HOM05D007446 ORTHO05D009376 2.0e-32 142.1 88 86.4
MD02G1128000 Malus domestica HOM05D007446 ORTHO05D009376 7.5e-32 140.2 85 83.5
AUR62003348 Chenopodium quinoa HOM05D007446 ORTHO05D009376 2.9e-31 138.3 88 84.1
FvH4_1g11510 Fragaria vesca HOM05D007446 ORTHO05D009376 3.7e-31 137.9 85 84.7
RcHm_v2.0_Chr2g0099131 Rosa chinensis HOM05D007446 ORTHO05D009376 3.7e-31 137.9 85 84.7
Cpa.g.sc6.279 Carica papaya HOM05D007446 ORTHO05D009376 6.4e-31 137.1 87 82.8
Dinv40111 Davidia involucrata HOM05D007446 ORTHO05D009376 6.4e-31 137.1 80 90.0
Hund14058 Selenicereus undatus HOM05D007446 ORTHO05D009376 6.4e-31 137.1 88 78.4
AUR62029488 Chenopodium quinoa HOM05D007446 ORTHO05D009376 8.3e-31 136.7 88 83.0
AUR62043833 Chenopodium quinoa HOM05D007446 ORTHO05D009376 8.3e-31 136.7 88 83.0
Thecc.01G015400 Theobroma cacao HOM05D007446 ORTHO05D009376 8.3e-31 136.7 87 82.8
Duzib264G0432 Durio zibethinus HOM05D007446 ORTHO05D009376 1.4e-30 136.0 80 90.0
QL06p051006 Quercus lobata HOM05D007446 ORTHO05D009376 1.9e-30 135.6 81 87.7
HanXRQChr09g0256761 Helianthus annuus HOM05D007446 ORTHO05D009376 4.1e-30 134.4 88 77.3
CAN.G1817.7 Capsicum annuum HOM05D007446 ORTHO05D009376 5.4e-30 134.0 87 79.3
Eucgr.J02461 Eucalyptus grandis HOM05D007446 ORTHO05D009376 5.4e-30 134.0 88 81.8
arahy.Tifrunner.gnm1.ann1.786IJB Arachis hypogaea HOM05D007446 ORTHO05D009376 7.0e-30 133.7 84 83.3
arahy.Tifrunner.gnm1.ann1.RW313X Arachis hypogaea HOM05D007446 ORTHO05D009376 7.0e-30 133.7 84 83.3
CAN.G1274.24 Capsicum annuum HOM05D007446 ORTHO05D009376 7.0e-30 133.7 85 82.4
CsaV3_6G047300 Cucumis sativus L. HOM05D007446 ORTHO05D009376 7.0e-30 133.7 83 84.3
ECA232G4023 Erigeron canadensis HOM05D007446 ORTHO05D009376 7.0e-30 133.7 88 78.4
Cfa006995 Carpinus fangiana HOM05D007446 ORTHO05D009376 9.2e-30 133.3 83 84.3
Ciclev10026855m.g Citrus clementina HOM05D007446 ORTHO05D009376 9.2e-30 133.3 88 77.3
FAN23G0535 Fragaria x ananassa HOM05D000971 ORTHO05D000901 1.2e-29 132.9 84 82.1
PGR119G1403 Punica granatum HOM05D007446 ORTHO05D009376 1.2e-29 132.9 88 80.7
Ah.03g149050 Amaranthus hybridus HOM05D007446 ORTHO05D009376 1.6e-29 132.5 88 80.7
Haze_03737 Corylus avellana HOM05D007446 ORTHO05D009376 1.6e-29 132.5 83 83.1
Gohir.D11G181100 Gossypium hirsutum HOM05D007446 ORTHO05D009376 2.7e-29 131.7 80 86.2
Gorai.007G193000 Gossypium raimondii HOM05D007446 ORTHO05D009376 2.7e-29 131.7 80 86.2
SalBow3G1068 Salvia bowleyana HOM05D007446 ORTHO05D009376 2.7e-29 131.7 86 79.1
Solyc02g083650.3 Solanum lycopersicum HOM05D007446 ORTHO05D009376 3.5e-29 131.3 85 82.4
Sopen02g028430 Solanum pennellii HOM05D007446 ORTHO05D009376 3.5e-29 131.3 85 82.4
CANSAT25G1207 Cannabis sativa HOM05D007446 ORTHO05D009376 4.6e-29 131.0 91 80.2
PGSC0003DMG400003579 Solanum tuberosum HOM05D007446 ORTHO05D009376 4.6e-29 131.0 85 82.4
Carub.0007s0425 Capsella rubella HOM05D007446 ORTHO05D009376 6.0e-29 130.6 89 79.8
Aa31LG6G12930 Aethionema arabicum HOM05D007446 ORTHO05D009376 7.8e-29 130.2 89 78.7
A01p02730 Brassica napus HOM05D007446 ORTHO05D009376 2.3e-28 128.6 89 77.5
BolC1t00289H Brassica oleracea HOM05D007446 ORTHO05D009376 2.3e-28 128.6 89 77.5
AL7G15070 Arabidopsis lyrata HOM05D007446 ORTHO05D009376 3.0e-28 128.3 89 78.7
BcaNung00774 Brassica carinata HOM05D007446 ORTHO05D009376 3.0e-28 128.3 89 77.5
BraA01t00259Z Brassica rapa HOM05D007446 ORTHO05D009376 3.9e-28 127.9 89 77.5
FAN26G2670 Fragaria x ananassa HOM05D007446 ORTHO05D009376 3.9e-28 127.9 80 83.8
Peaxi162Scf00328g00716 Petunia axillaris HOM05D007446 ORTHO05D009376 5.1e-28 127.5 85 80.0
C01p03030 Brassica napus HOM05D007446 ORTHO05D009376 6.6e-28 127.1 89 76.4
Sp7g33750 Schrenkiella parvula HOM05D007446 ORTHO05D009376 6.6e-28 127.1 89 76.4
Thhalv10026680m.g Eutrema salsugineum HOM05D007446 ORTHO05D009376 1.9e-27 125.6 89 76.4
FAN19G2392 Fragaria x ananassa HOM05D000971 ORTHO05D000901 1.9e-27 125.6 73 86.3
FAN28G0109 Fragaria x ananassa HOM05D000971 ORTHO05D000901 1.9e-27 125.6 76 81.6
THA.LOC104804270 Tarenaya hassleriana HOM05D007446 ORTHO05D009376 1.9e-27 125.6 89 76.4
AT4G35980 Arabidopsis thaliana HOM05D007446 ORTHO05D009376 5.6e-27 124.0 88 73.9
Migut.H02175 Erythranthe guttata HOM05D007446 ORTHO05D009376 3.6e-26 121.3 86 77.9
Lsat_1_v5_gn_4_145721 Lactuca sativa HOM05D007446 ORTHO05D009376 1.4e-25 119.4 86 74.4
TPR.G19502 Trifolium pratense HOM05D007446 ORTHO05D009376 1.4e-25 119.4 89 74.2
Phvul.003G264800 Phaseolus vulgaris HOM05D007446 ORTHO05D009376 1.8e-25 119.0 87 72.4
Sc07g0001100 Simmondsia chinensis HOM05D007446 ORTHO05D009376 4.0e-25 117.9 72 79.2
Glyma.16G124800 Glycine max HOM05D007446 ORTHO05D009376 6.8e-25 117.1 89 73.0
SGA_v2.0_scaffold74G24537 Striga asiatica HOM05D007446 ORTHO05D009376 6.8e-25 117.1 82 75.6
Nn7g37082 Nelumbo nucifera HOM05D007446 ORTHO05D009376 1.5e-24 115.9 86 73.3
MELO3C007921.2 Cucumis melo HOM05D007446 ORTHO05D009376 2.0e-24 115.5 71 84.5
Sc07g0001150 Simmondsia chinensis HOM05D007446 ORTHO05D009376 4.4e-24 114.4 72 79.2
TAR636G2489 Trochodendron aralioides HOM05D007446 ORTHO05D009376 4.4e-24 114.4 84 73.8
Psat4g101880 Pisum sativum HOM05D007446 ORTHO05D009376 5.8e-24 114.0 88 68.2
Medtr8g075290 Medicago truncatula HOM05D007446 ORTHO05D009376 7.5e-24 113.6 89 69.7
Sed0007439 Sechium edule HOM05D007446 ORTHO05D009376 2.9e-23 111.7 71 83.1
Psat4g101720 Pisum sativum HOM05D007446 ORTHO05D009376 6.4e-23 110.5 88 67.0
TPR.G25793 Trifolium pratense HOM05D000002 ORTHO05D000001 2.4e-22 108.6 83 72.3
DCAR_023140 Daucus carota HOM05D000372 ORTHO05D004502 5.4e-22 107.5 81 70.4
Oeu007438.1 Olea europaea HOM05D007446 ORTHO05D009376 2.1e-21 105.5 63 90.5
Nitab4.5_0001658g0040 Nicotiana tabacum HOM05D007446 ORTHO05D009376 1.7e-20 102.4 68 79.4
DCAR_011601 Daucus carota HOM05D007446 ORTHO05D009376 2.3e-20 102.1 81 67.9
Nitab4.5_0001892g0060 Nicotiana tabacum HOM05D007446 ORTHO05D009376 2.3e-20 102.1 68 79.4
Os05g0352800 Oryza sativa ssp. japonica HOM05D007446 ORTHO05D009376 2.3e-20 102.1 73 68.5
THA.LOC109115992 Tarenaya hassleriana HOM05D007446 ORTHO05D009376 1.1e-19 99.8 83 67.5
unitig_899.g14718 Utricularia gibba HOM05D007446 ORTHO05D009376 1.1e-19 99.8 81 69.1
MD15G1243200 Malus domestica HOM05D007446 ORTHO05D009376 2.5e-19 98.6 60 83.3
Oeu054756.1 Olea europaea HOM05D007446 ORTHO05D009376 2.5e-19 98.6 61 85.2
Gorai.007G317400 Gossypium raimondii HOM05D007446 ORTHO05D009376 3.3e-19 98.2 74 75.7
ATR0681G038 Amborella trichopoda HOM05D007446 ORTHO05D009376 5.6e-19 97.4 79 62.0
Gohir.D11G294266 Gossypium hirsutum HOM05D007446 ORTHO05D009376 9.5e-19 96.7 76 72.4
Gohir.A11G174000 Gossypium hirsutum HOM05D007446 ORTHO05D009376 3.1e-17 91.7 55 87.3
HPP92_012021 Vanilla planifolia HOM05D007446 ORTHO05D009376 3.1e-17 91.7 72 62.5
Glyma.02G046300 Glycine max HOM05D007446 ORTHO05D009376 3.2e-14 81.6 52 75.0
PGSC0003DMG400022557 Solanum tuberosum HOM05D007446 ORTHO05D009376 4.2e-14 81.3 62 69.4
SalBow3G4512 Salvia bowleyana HOM05D007446 ORTHO05D009376 1.6e-13 79.3 54 68.5
Pp3c23_18910 Physcomitrium patens HOM05D007446 ORTHO05D009376 1.7e-12 75.9 77 54.5
Psat0s2733g0120 Pisum sativum HOM05D007446 ORTHO05D009376 1.7e-12 75.9 87 50.6
Actinidia22956 Actinidia chinensis HOM05D007446 ORTHO05D009376 3.0e-12 75.1 88 59.1
Mapoly0007s0006 Marchantia polymorpha HOM05D007446 ORTHO05D009376 7.3e-11 70.5 70 54.3
AagrBONN_evm.TU.Sc2ySwM_228.3577 Anthoceros agrestis HOM05D007446 ORTHO05D009376 2.6e-08 62.0 64 43.8
Zm00001eb428230 Zea mays HOM05D007446 ORTHO05D009376 4.4e-08 61.2 50 68.0
TAR369G0162 Trochodendron aralioides HOM05D002795 ORTHO05D000638 9.9e-08 60.1 38 76.3


User provided reference genes

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