Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009505 Camellia sinensis var. sinensis HOM05D006099 ORTHO05D007317 4.0e-159 564.7 278 100.0
Actinidia03572 Actinidia chinensis HOM05D006099 ORTHO05D007317 1.1e-121 440.3 280 80.7
CSS0007227 Camellia sinensis var. sinensis HOM05D006099 ORTHO05D007317 5.2e-119 431.4 218 96.3
Dinv37480 Davidia involucrata HOM05D006099 ORTHO05D007317 3.5e-115 418.7 276 75.0
Rhsim07G0173500 Rhododendron simsii HOM05D006099 ORTHO05D007317 7.3e-113 411.0 298 72.1
Lj7A751T33 Lonicera japonica HOM05D006099 ORTHO05D007317 6.0e-107 391.3 276 71.7
GSVIVG01035588001 Vitis vinifera HOM05D006099 ORTHO05D007317 7.8e-107 391.0 274 72.3
Nn4g25135 Nelumbo nucifera HOM05D006099 ORTHO05D007317 9.9e-102 374.0 264 70.1
CANSAT25G1623 Cannabis sativa HOM05D006099 ORTHO05D007317 1.7e-101 373.2 273 68.1
Cfa013234 Carpinus fangiana HOM05D006099 ORTHO05D007317 2.2e-101 372.9 267 70.0
Solyc12g096280.2 Solanum lycopersicum HOM05D006099 ORTHO05D007317 1.4e-100 370.2 272 67.6
CAN.G947.18 Capsicum annuum HOM05D006099 ORTHO05D007317 5.4e-100 368.2 272 66.2
Sopen12g032140 Solanum pennellii HOM05D006099 ORTHO05D007317 3.5e-99 365.5 254 70.1
Hma1.2p1_1615F.1_g293710 Hydrangea macrophylla HOM05D006099 ORTHO05D007317 5.1e-98 361.7 235 77.4
arahy.Tifrunner.gnm1.ann1.AEW87R Arachis hypogaea HOM05D006099 ORTHO05D007317 6.6e-98 361.3 270 67.0
FvH4_2g30570 Fragaria vesca HOM05D006099 ORTHO05D007317 1.5e-97 360.1 266 69.2
Ciclev10009104m.g Citrus clementina HOM05D006099 ORTHO05D007317 2.5e-97 359.4 251 70.5
Nitab4.5_0001159g0110 Nicotiana tabacum HOM05D006099 ORTHO05D007317 3.3e-97 359.0 296 62.5
CiPaw.07G216100 Carya illinoinensis HOM05D006099 ORTHO05D007317 5.6e-97 358.2 243 72.4
Medtr1g010130 Medicago truncatula HOM05D006099 ORTHO05D007317 9.6e-97 357.5 266 65.8
Lj5g0025000 Lotus japonicus HOM05D006099 ORTHO05D007317 4.8e-96 355.1 264 66.7
MD08G1132300 Malus domestica HOM05D006099 ORTHO05D007317 6.2e-96 354.8 251 70.1
ECA240G1547 Erigeron canadensis HOM05D006099 ORTHO05D007317 4.0e-95 352.1 248 68.5
Lalb_Chr24g0402361 Lupinus albus HOM05D006099 ORTHO05D007317 9.0e-95 350.9 261 65.9
Cc00_g12770 Coffea canephora HOM05D006099 ORTHO05D007317 1.2e-94 350.5 275 64.0
Phvul.001G057000 Phaseolus vulgaris HOM05D006099 ORTHO05D007317 7.6e-94 347.8 272 64.3
Potri.018G001000 Populus trichocarpa HOM05D006099 ORTHO05D007317 2.2e-93 346.3 271 65.7
BraA08t33839Z Brassica rapa HOM05D006099 ORTHO05D007317 4.9e-93 345.1 269 63.9
Ca_27927_v3 Cicer arietinum L. HOM05D006099 ORTHO05D007317 6.4e-93 344.7 271 62.7
Manes.15G141200 Manihot esculenta HOM05D006099 ORTHO05D007317 6.4e-93 344.7 249 65.9
AL7G20920 Arabidopsis lyrata HOM05D006099 ORTHO05D007317 1.1e-92 344.0 265 62.6
arahy.Tifrunner.gnm1.ann1.ZJIP4K Arachis hypogaea HOM05D006099 ORTHO05D007317 3.2e-92 342.4 259 66.4
AT4G31150 Arabidopsis thaliana HOM05D006099 ORTHO05D007317 4.2e-92 342.0 265 62.3
PGSC0003DMG400029284 Solanum tuberosum HOM05D006099 ORTHO05D007317 4.2e-92 342.0 243 69.1
VMungo0647G0711 Vigna mungo HOM05D006099 ORTHO05D007317 1.6e-91 340.1 275 62.9
Gohir.A05G066400 Gossypium hirsutum HOM05D006099 ORTHO05D007317 2.7e-91 339.3 263 64.6
Gohir.D05G068900 Gossypium hirsutum HOM05D006099 ORTHO05D007317 2.7e-91 339.3 264 64.4
Gorai.009G069800 Gossypium raimondii HOM05D006099 ORTHO05D007317 2.7e-91 339.3 264 64.4
Thhalv10025966m.g Eutrema salsugineum HOM05D006099 ORTHO05D007317 3.5e-91 339.0 269 62.8
Lsat_1_v5_gn_3_111601 Lactuca sativa HOM05D006099 ORTHO05D007317 6.0e-91 338.2 265 63.4
Sed0006978 Sechium edule HOM05D006099 ORTHO05D007317 7.9e-91 337.8 267 67.0
HanXRQChr13g0419861 Helianthus annuus HOM05D006099 ORTHO05D007317 2.3e-90 336.3 263 63.9
Sp7g29030 Schrenkiella parvula HOM05D006099 ORTHO05D007317 2.3e-90 336.3 269 62.1
PGR142G3206 Punica granatum HOM05D006099 ORTHO05D007317 5.1e-90 335.1 259 64.5
Carub.0007s0938 Capsella rubella HOM05D006099 ORTHO05D007317 6.7e-90 334.7 268 61.9
QL12p030693 Quercus lobata HOM05D006099 ORTHO05D007317 1.1e-89 334.0 276 64.1
CsaV3_2G031500 Cucumis sativus L. HOM05D006099 ORTHO05D007317 1.9e-89 333.2 267 66.3
A08p18780 Brassica napus HOM05D006099 ORTHO05D007317 5.6e-89 331.6 293 58.7
C03p88160 Brassica napus HOM05D006099 ORTHO05D007317 7.4e-89 331.3 259 62.2
BolC3t21124H Brassica oleracea HOM05D006099 ORTHO05D007317 9.6e-89 330.9 274 60.2
Manes.15G141100 Manihot esculenta HOM05D006099 ORTHO05D007317 1.3e-88 330.5 254 65.4
ATR0626G128 Amborella trichopoda HOM05D006099 ORTHO05D007317 1.6e-88 330.1 251 61.8
Glyma.14G131200 Glycine max HOM05D006099 ORTHO05D007317 1.6e-88 330.1 235 69.4
Thecc.09G001300 Theobroma cacao HOM05D006099 ORTHO05D007317 2.1e-88 329.7 244 66.4
THA.LOC104803891 Tarenaya hassleriana HOM05D006099 ORTHO05D007317 2.8e-88 329.3 250 63.2
FAN15G2948 Fragaria x ananassa HOM05D006099 ORTHO05D007317 4.8e-88 328.6 278 63.3
PSO170G3285 Papaver somniferum HOM05D006099 ORTHO05D007317 6.2e-88 328.2 260 61.2
Duzib168G0660 Durio zibethinus HOM05D006099 ORTHO05D007317 1.1e-87 327.4 285 59.3
FAN27G0146 Fragaria x ananassa HOM05D006099 ORTHO05D007317 1.4e-87 327.0 278 62.9
ClCG08G012820 Citrullus lanatus HOM05D006099 ORTHO05D007317 5.3e-87 325.1 276 64.9
Aa31LG2G19160 Aethionema arabicum HOM05D006099 ORTHO05D007317 9.0e-87 324.3 268 61.2
Sc23g0004430 Simmondsia chinensis HOM05D006099 ORTHO05D007317 9.0e-87 324.3 270 61.1
QL12p030880 Quercus lobata HOM05D006099 ORTHO05D007317 1.2e-86 323.9 301 58.8
AUR62020668 Chenopodium quinoa HOM05D006099 ORTHO05D007317 1.3e-85 320.5 264 61.4
Atru.chr7.2710 Acer truncatum HOM05D006099 ORTHO05D007317 2.2e-85 319.7 254 63.0
Oeu035175.2 Olea europaea HOM05D006099 ORTHO05D007317 2.2e-85 319.7 230 68.3
SGA_v2.0_scaffold27G11694 Striga asiatica HOM05D006099 ORTHO05D007317 4.9e-85 318.5 267 62.9
Zm00001eb274410 Zea mays HOM05D006099 ORTHO05D007317 4.2e-84 315.5 249 61.8
DCAR_000694 Daucus carota HOM05D006099 ORTHO05D007317 2.1e-83 313.2 261 62.8
MELO3C011207.2 Cucumis melo HOM05D006099 ORTHO05D007317 6.0e-83 311.6 260 65.0
Haze_21663 Corylus avellana HOM05D006099 ORTHO05D007317 6.7e-82 308.1 247 64.0
BcaB03g12683 Brassica carinata HOM05D006099 ORTHO05D007317 1.9e-81 306.6 248 61.3
SalBow4G2099 Salvia bowleyana HOM05D006099 ORTHO05D007317 1.3e-80 303.9 254 62.2
RcHm_v2.0_Chr6g0312441 Rosa chinensis HOM05D006099 ORTHO05D007317 1.8e-79 300.1 248 61.7
Sabra18G0005300 Salix brachista HOM05D002037 ORTHO05D002762 5.3e-79 298.5 270 59.6
Eucgr.C02144 Eucalyptus grandis HOM05D006099 ORTHO05D007317 6.5e-77 291.6 248 59.3
Mapoly0013s0098 Marchantia polymorpha HOM05D006099 ORTHO05D007317 9.3e-76 287.7 250 58.0
Pp3c6_10670 Physcomitrium patens HOM05D006099 ORTHO05D007317 1.6e-75 287.0 254 55.5
Hund03250 Selenicereus undatus HOM05D006099 ORTHO05D007317 1.3e-74 283.9 249 61.0
Hma1.2p1_1615F.1_g293700 Hydrangea macrophylla HOM05D006099 ORTHO05D007317 8.7e-74 281.2 214 67.8
EL10Ac2g03669 Beta vulgaris HOM05D006099 ORTHO05D007317 1.5e-73 280.4 247 59.9
AagrBONN_evm.TU.Sc2ySwM_228.1579 Anthoceros agrestis HOM05D006099 ORTHO05D007317 8.2e-72 274.6 270 51.1
PSO063G7181 Papaver somniferum HOM05D006099 ORTHO05D007317 7.7e-70 268.1 207 62.8
Cpa.g.sc148.13 Carica papaya HOM05D006099 ORTHO05D007317 6.5e-69 265.0 200 62.5
AUR62028064 Chenopodium quinoa HOM05D006099 ORTHO05D007317 2.5e-68 263.1 389 41.6
FAN24G0140 Fragaria x ananassa HOM05D006099 ORTHO05D007317 1.2e-67 260.8 207 65.7
SMO351G0465 Selaginella moellendorffii HOM05D006099 ORTHO05D007317 1.2e-67 260.8 246 51.6
TWI32G0633 Tripterygium wilfordii HOM05D006099 ORTHO05D007317 1.4e-66 257.3 217 61.3
MBI16_g00820_MAGBIO Magnolia biondii HOM05D006099 ORTHO05D007317 5.7e-65 251.9 236 56.8
HanXRQChr13g0419831 Helianthus annuus HOM05D006099 ORTHO05D007317 1.3e-61 240.7 150 73.3
FAN20G1258 Fragaria x ananassa HOM05D006099 ORTHO05D007317 5.0e-61 238.8 277 50.9
FAN20G1767 Fragaria x ananassa HOM05D006099 ORTHO05D007317 5.0e-61 238.8 277 50.9
CBR_g34340 Chara braunii HOM05D006099 ORTHO05D007317 2.5e-60 236.5 213 52.6
Ah.11g044160 Amaranthus hybridus HOM05D006099 ORTHO05D007317 1.2e-59 234.2 251 49.4
Sc23g0004790 Simmondsia chinensis HOM05D006099 ORTHO05D007317 1.0e-58 231.1 272 49.6
vmacro05090 Vaccinium macrocarpon HOM05D006099 ORTHO05D007317 1.8e-58 230.3 160 74.4
Peaxi162Scf00876g00025 Petunia axillaris HOM05D006099 ORTHO05D007317 8.2e-56 221.5 262 48.1
RcHm_v2.0_Chr6g0312501 Rosa chinensis HOM05D006099 ORTHO05D007317 3.2e-52 209.5 190 58.9
Os06g0663600 Oryza sativa ssp. japonica HOM05D006099 ORTHO05D007317 5.5e-52 208.8 156 67.3
Zm00001eb274500 Zea mays HOM05D006099 ORTHO05D007317 1.4e-50 204.1 163 62.0
HPP92_011639 Vanilla planifolia HOM05D006099 ORTHO05D007317 3.9e-50 202.6 157 62.4
Zm00001eb274550 Zea mays HOM05D006099 ORTHO05D007317 1.4e-47 194.1 156 62.2
CDE06G2693 Ceratophyllum demersum HOM05D006099 ORTHO05D007317 9.1e-47 191.4 207 49.3
unitig_32.g10951 Utricularia gibba HOM05D006099 ORTHO05D007317 2.5e-44 183.3 125 68.8
Zm00001eb442290 Zea mays HOM05D006099 ORTHO05D007317 6.8e-42 175.3 121 68.6
BolC6t36631H Brassica oleracea HOM05D006099 ORTHO05D007317 1.2e-41 174.5 152 57.9
Psat6g031520 Pisum sativum HOM05D006099 ORTHO05D007317 1.2e-41 174.5 133 65.4
CARHR239060 Cardamine hirsuta HOM05D006099 ORTHO05D007317 1.5e-41 174.1 117 69.2
BcaC08g44050 Brassica carinata HOM05D006099 ORTHO05D007317 2.0e-41 173.7 152 57.9
BcaC04g20481 Brassica carinata HOM05D006099 ORTHO05D007317 1.7e-40 170.6 152 57.2
C09p43040 Brassica napus HOM05D006099 ORTHO05D007317 1.7e-40 170.6 152 57.2
Prupe.1G463600 Prunus persica HOM05D006099 ORTHO05D007317 7.7e-38 161.8 139 61.9
C03p41630 Brassica napus HOM05D006099 ORTHO05D007317 8.5e-37 158.3 129 58.1
MCO10G112 Micromonas commoda HOM05D006099 ORTHO05D007317 6.1e-35 152.1 292 35.6
Nitab4.5_0001327g0030 Nicotiana tabacum HOM05D006099 ORTHO05D007317 6.1e-35 152.1 113 65.5
TPR.G30957 Trifolium pratense HOM05D006099 ORTHO05D007317 9.8e-33 144.8 96 70.8
Migut.A00464 Erythranthe guttata HOM05D006099 ORTHO05D007317 1.3e-32 144.4 142 52.8
Cre07.g346100 Chlamydomonas reinhardtii HOM05D006099 ORTHO05D007317 2.9e-29 133.3 295 31.9
Migut.A00463 Erythranthe guttata HOM05D006099 ORTHO05D007317 8.6e-29 131.7 120 55.8
TAR626G0599 Trochodendron aralioides HOM05D006099 ORTHO05D007317 5.5e-28 129.0 239 35.6
MSTRG.11825 Avicennia marina HOM05D006099 ORTHO05D007317 4.0e-26 122.9 107 57.9
HPP92_011638 Vanilla planifolia HOM05D006099 ORTHO05D007317 1.5e-25 120.9 71 73.2
SHI15001 Sapria himalayana HOM05D006099 ORTHO05D007317 4.9e-24 115.9 100 58.0
TPR.G26527 Trifolium pratense HOM05D006099 ORTHO05D007317 1.1e-23 114.8 123 50.4
Zm00001eb274520 Zea mays HOM05D006099 ORTHO05D007317 1.6e-22 110.9 99 55.6
SHI15000 Sapria himalayana HOM05D000105 ORTHO05D000023 1.7e-21 107.5 166 41.0
unitig_32.g10950 Utricularia gibba HOM05D006099 ORTHO05D007317 5.0e-21 105.9 95 58.9
TPR.G3995 Trifolium pratense HOM05D006099 ORTHO05D007317 9.5e-20 101.7 56 76.8
QL02p066379 Quercus lobata HOM05D006099 ORTHO05D007317 1.0e-18 98.2 61 75.4
HPP92_011640 Vanilla planifolia HOM05D006099 ORTHO05D007317 1.4e-18 97.8 85 48.2
CDE08G0278 Ceratophyllum demersum HOM05D006099 ORTHO05D007317 1.4e-10 71.2 64 54.7
SHI14999 Sapria himalayana HOM05D005377 ORTHO05D003034 6.4e-08 62.4 41 68.3
SalBow8G2774 Salvia bowleyana HOM05D002799 ORTHO05D007076 5.4e-07 59.3 33 78.8


User provided reference genes

Program Settings