Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009484 Camellia sinensis var. sinensis HOM05D004005 ORTHO05D004876 3.3e-59 231.5 117 100.0
CSS0023830 Camellia sinensis var. sinensis HOM05D004005 ORTHO05D004876 1.1e-57 226.5 117 98.3
CSS0024178 Camellia sinensis var. sinensis HOM05D004005 ORTHO05D004876 3.1e-41 171.8 94 90.4
CSS0035914 Camellia sinensis var. sinensis HOM05D004005 ORTHO05D004876 3.1e-41 171.8 94 90.4
Solyc07g006160.3 Solanum lycopersicum HOM05D004005 ORTHO05D004876 1.7e-39 166.0 94 85.1
Sopen07g002270 Solanum pennellii HOM05D004005 ORTHO05D004876 1.7e-39 166.0 94 85.1
PGSC0003DMG400011163 Solanum tuberosum HOM05D004005 ORTHO05D004876 1.7e-39 166.0 94 85.1
ECA234G2728 Erigeron canadensis HOM05D004005 ORTHO05D004876 3.8e-39 164.9 96 84.4
Dinv41324 Davidia involucrata HOM05D004005 ORTHO05D004876 5.0e-39 164.5 94 84.0
Lj9A725G34 Lonicera japonica HOM05D004005 ORTHO05D004876 5.0e-39 164.5 92 88.0
Cpa.g.sc199.4 Carica papaya HOM05D004005 ORTHO05D004876 6.6e-39 164.1 106 75.5
Cc09_g08370 Coffea canephora HOM05D004005 ORTHO05D004876 6.6e-39 164.1 94 84.0
Dinv42799 Davidia involucrata HOM05D004005 ORTHO05D004876 1.1e-38 163.3 94 83.0
Dinv43302 Davidia involucrata HOM05D004005 ORTHO05D004876 1.1e-38 163.3 94 83.0
Peaxi162Scf00038g00320 Petunia axillaris HOM05D004005 ORTHO05D004876 1.1e-38 163.3 94 83.0
PGR102G1327 Punica granatum HOM05D004005 ORTHO05D004876 1.1e-38 163.3 96 82.3
CAN.G1190.5 Capsicum annuum HOM05D004005 ORTHO05D004876 1.9e-38 162.5 94 81.9
Prupe.1G100000 Prunus persica HOM05D004005 ORTHO05D004876 1.9e-38 162.5 96 83.3
GSVIVG01023713001 Vitis vinifera HOM05D004005 ORTHO05D004876 1.9e-38 162.5 94 81.9
HanXRQChr03g0065981 Helianthus annuus HOM05D004005 ORTHO05D004876 3.3e-38 161.8 96 82.3
HanXRQChr10g0307841 Helianthus annuus HOM05D004005 ORTHO05D004876 3.3e-38 161.8 96 82.3
Oeu045108.2 Olea europaea HOM05D004005 ORTHO05D004876 3.3e-38 161.8 94 81.9
Lsat_1_v5_gn_7_51181 Lactuca sativa HOM05D004005 ORTHO05D004876 4.2e-38 161.4 96 81.2
Nitab4.5_0003269g0020 Nicotiana tabacum HOM05D004005 ORTHO05D004876 4.2e-38 161.4 96 81.2
TAR383G0006 Trochodendron aralioides HOM05D004005 ORTHO05D004876 4.2e-38 161.4 94 80.9
Hma1.2p1_0028F.1_g017890 Hydrangea macrophylla HOM05D004005 ORTHO05D004876 5.5e-38 161.0 94 80.9
ClCG06G012740 Citrullus lanatus HOM05D004005 ORTHO05D004876 7.2e-38 160.6 94 83.0
CsaV3_1G029280 Cucumis sativus L. HOM05D004005 ORTHO05D004876 7.2e-38 160.6 94 84.0
DCAR_017932 Daucus carota HOM05D004005 ORTHO05D004876 7.2e-38 160.6 92 83.7
Lsat_1_v5_gn_5_88220 Lactuca sativa HOM05D004005 ORTHO05D004876 7.2e-38 160.6 96 82.3
RcHm_v2.0_Chr4g0405201 Rosa chinensis HOM05D004005 ORTHO05D004876 7.2e-38 160.6 96 81.2
Actinidia38657 Actinidia chinensis HOM05D004005 ORTHO05D004876 9.5e-38 160.2 96 81.2
Hma1.2p1_0325F.1_g126020 Hydrangea macrophylla HOM05D004005 ORTHO05D004876 9.5e-38 160.2 94 80.9
Nitab4.5_0002545g0030 Nicotiana tabacum HOM05D004005 ORTHO05D004876 9.5e-38 160.2 96 81.2
MELO3C010189.2 Cucumis melo HOM05D004005 ORTHO05D004876 1.2e-37 159.8 94 83.0
Eucgr.C01238 Eucalyptus grandis HOM05D004005 ORTHO05D004876 1.2e-37 159.8 100 77.0
PSO782G3855 Papaver somniferum HOM05D004005 ORTHO05D004876 1.2e-37 159.8 96 80.2
THA.LOC104817817 Tarenaya hassleriana HOM05D004005 ORTHO05D004876 1.2e-37 159.8 92 83.7
TAR636G3166 Trochodendron aralioides HOM05D004005 ORTHO05D004876 1.2e-37 159.8 94 78.7
Migut.K00290 Erythranthe guttata HOM05D004005 ORTHO05D004876 2.1e-37 159.1 94 80.9
Sp7g26020 Schrenkiella parvula HOM05D004005 ORTHO05D004876 2.1e-37 159.1 94 80.9
MD16G1260700 Malus domestica HOM05D004005 ORTHO05D004876 2.8e-37 158.7 96 80.2
PSO063G3364 Papaver somniferum HOM05D004005 ORTHO05D004876 2.8e-37 158.7 96 79.2
CSS0032478 Camellia sinensis var. sinensis HOM05D004005 ORTHO05D004876 4.7e-37 157.9 92 83.7
CiPaw.08G000800 Carya illinoinensis HOM05D004005 ORTHO05D004876 4.7e-37 157.9 94 79.8
COL.COLO4_10070 Corchorus olitorius HOM05D004005 ORTHO05D004876 4.7e-37 157.9 94 79.8
Manes.14G150200 Manihot esculenta HOM05D004005 ORTHO05D004876 4.7e-37 157.9 94 77.7
Peaxi162Scf00038g00327 Petunia axillaris HOM05D004005 ORTHO05D004876 4.7e-37 157.9 94 78.7
Carub.0007s1271 Capsella rubella HOM05D004005 ORTHO05D004876 6.1e-37 157.5 94 80.9
Gorai.004G105600 Gossypium raimondii HOM05D004005 ORTHO05D004876 6.1e-37 157.5 94 80.9
Rhsim03G0261200 Rhododendron simsii HOM05D004005 ORTHO05D004876 6.1e-37 157.5 92 82.6
AL7G24540 Arabidopsis lyrata HOM05D004005 ORTHO05D004876 8.0e-37 157.1 94 80.9
MD00G1158000 Malus domestica HOM05D004005 ORTHO05D004876 8.0e-37 157.1 94 80.9
ATR0580G234 Amborella trichopoda HOM05D004005 ORTHO05D004876 1.0e-36 156.8 94 78.7
Thecc.09G157600 Theobroma cacao HOM05D004005 ORTHO05D004876 1.0e-36 156.8 96 79.2
A01p19450 Brassica napus HOM05D004005 ORTHO05D004876 1.4e-36 156.4 94 78.7
C01p24500 Brassica napus HOM05D004005 ORTHO05D004876 1.4e-36 156.4 94 78.7
BolC1t02399H Brassica oleracea HOM05D004005 ORTHO05D004876 1.4e-36 156.4 94 78.7
BraA01t01885Z Brassica rapa HOM05D004005 ORTHO05D004876 1.4e-36 156.4 94 78.7
Duzib150G0934 Durio zibethinus HOM05D004005 ORTHO05D004876 1.4e-36 156.4 94 78.7
Ciclev10008098m.g Citrus clementina HOM05D004005 ORTHO05D004876 1.8e-36 156.0 92 81.5
Sabra18G0086900 Salix brachista HOM05D004005 ORTHO05D004876 1.8e-36 156.0 96 77.1
MD13G1275200 Malus domestica HOM05D004005 ORTHO05D004876 2.3e-36 155.6 96 79.2
Sed0005377 Sechium edule HOM05D004005 ORTHO05D004876 2.3e-36 155.6 94 79.8
TWI34G0830 Tripterygium wilfordii HOM05D004005 ORTHO05D004876 2.3e-36 155.6 94 78.7
MSTRG.26250 Avicennia marina HOM05D004005 ORTHO05D004876 3.0e-36 155.2 94 80.9
Duzib168G0635 Durio zibethinus HOM05D004005 ORTHO05D004876 3.0e-36 155.2 94 78.7
Duzib187G0310 Durio zibethinus HOM05D004005 ORTHO05D004876 3.0e-36 155.2 95 77.9
Potri.018G100900 Populus trichocarpa HOM05D004005 ORTHO05D004876 3.0e-36 155.2 92 80.4
Gohir.A08G092600 Gossypium hirsutum HOM05D004005 ORTHO05D004876 4.0e-36 154.8 94 79.8
BcaC09g50514 Brassica carinata HOM05D004005 ORTHO05D004876 6.8e-36 154.1 94 78.7
BcaNung01599 Brassica carinata HOM05D004005 ORTHO05D004876 6.8e-36 154.1 94 78.7
CARHR235770 Cardamine hirsuta HOM05D004005 ORTHO05D004876 6.8e-36 154.1 94 78.7
Cc06_g14320 Coffea canephora HOM05D004005 ORTHO05D004876 6.8e-36 154.1 94 76.6
Gohir.D08G098200 Gossypium hirsutum HOM05D004005 ORTHO05D004876 8.9e-36 153.7 94 78.7
QL02p094609 Quercus lobata HOM05D004005 ORTHO05D004876 8.9e-36 153.7 94 78.7
A03p59900 Brassica napus HOM05D004005 ORTHO05D004876 1.2e-35 153.3 94 78.7
C07p57960 Brassica napus HOM05D004005 ORTHO05D004876 1.2e-35 153.3 94 78.7
DCAR_020096 Daucus carota HOM05D004005 ORTHO05D004876 1.5e-35 152.9 96 77.1
FvH4_4g08720 Fragaria vesca HOM05D004005 ORTHO05D004876 1.5e-35 152.9 96 80.2
VMungo1215G0146 Vigna mungo HOM05D004005 ORTHO05D004876 1.5e-35 152.9 94 76.6
FAN17G1822 Fragaria x ananassa HOM05D004005 ORTHO05D004876 2.0e-35 152.5 96 80.2
FAN22G1768 Fragaria x ananassa HOM05D004005 ORTHO05D004876 2.0e-35 152.5 96 80.2
Glyma.02G207800 Glycine max HOM05D004005 ORTHO05D004876 2.0e-35 152.5 93 77.4
MBI14_g16417_MAGBIO Magnolia biondii HOM05D004005 ORTHO05D004876 2.6e-35 152.1 94 75.5
BolC7t46254H Brassica oleracea HOM05D004005 ORTHO05D004876 3.4e-35 151.8 94 77.7
BraA03t15047Z Brassica rapa HOM05D004005 ORTHO05D004876 3.4e-35 151.8 94 77.7
vmacro06047 Vaccinium macrocarpon HOM05D004005 ORTHO05D004876 3.4e-35 151.8 104 74.0
Aqoxy5G00992 Aquilegia oxysepala HOM05D004005 ORTHO05D004876 4.4e-35 151.4 94 74.5
Glyma.17G069900 Glycine max HOM05D004005 ORTHO05D004876 4.4e-35 151.4 94 74.5
Atru.chr7.422 Acer truncatum HOM05D004005 ORTHO05D004876 5.7e-35 151.0 94 76.6
FAN12G2564 Fragaria x ananassa HOM05D004005 ORTHO05D004876 7.5e-35 150.6 96 79.2
FAN12G2633 Fragaria x ananassa HOM05D004005 ORTHO05D004876 7.5e-35 150.6 96 79.2
TWI63G1233 Tripterygium wilfordii HOM05D004005 ORTHO05D004876 7.5e-35 150.6 94 76.6
AL7G21650 Arabidopsis lyrata HOM05D004005 ORTHO05D004876 9.8e-35 150.2 94 75.5
ECA240G0337 Erigeron canadensis HOM05D004005 ORTHO05D004876 9.8e-35 150.2 96 79.2
AUR62028391 Chenopodium quinoa HOM05D004005 ORTHO05D004876 1.3e-34 149.8 94 75.5
SEGI_21312 Sequoiadendron giganteum HOM05D004005 ORTHO05D004876 1.3e-34 149.8 94 73.4
Carub.0007s1010 Capsella rubella HOM05D004005 ORTHO05D004876 2.8e-34 148.7 94 75.5
Thhalv10025004m.g Eutrema salsugineum HOM05D004005 ORTHO05D004876 2.8e-34 148.7 94 75.5
Ca_21161_v3 Cicer arietinum L. HOM05D004005 ORTHO05D004876 3.7e-34 148.3 94 72.3
BcaNung00559 Brassica carinata HOM05D004005 ORTHO05D004876 4.9e-34 147.9 93 77.4
CARHR238380 Cardamine hirsuta HOM05D004005 ORTHO05D004876 4.9e-34 147.9 94 74.5
Sp7g28370 Schrenkiella parvula HOM05D004005 ORTHO05D004876 6.3e-34 147.5 94 74.5
Medtr4g129950 Medicago truncatula HOM05D004005 ORTHO05D004876 1.1e-33 146.7 94 72.3
Phvul.003G152600 Phaseolus vulgaris HOM05D004005 ORTHO05D004876 1.4e-33 146.4 94 71.3
Psat0s3878g0040 Pisum sativum HOM05D004005 ORTHO05D004876 1.4e-33 146.4 94 70.2
TPR.G24854 Trifolium pratense HOM05D004005 ORTHO05D004876 1.4e-33 146.4 94 71.3
AT4G30490 Arabidopsis thaliana HOM05D004005 ORTHO05D004876 1.8e-33 146.0 94 73.4
Thhalv10025101m.g Eutrema salsugineum HOM05D004005 ORTHO05D004876 1.8e-33 146.0 89 80.9
HPP92_000253 Vanilla planifolia HOM05D004005 ORTHO05D004876 1.8e-33 146.0 97 72.2
Aa31LG2G20040 Aethionema arabicum HOM05D004005 ORTHO05D004876 2.4e-33 145.6 94 74.5
MBI14_g43176_MAGBIO Magnolia biondii HOM05D004005 ORTHO05D004876 3.1e-33 145.2 87 77.0
THA.LOC104819957 Tarenaya hassleriana HOM05D004005 ORTHO05D004876 3.1e-33 145.2 96 71.9
AT4G28070 Arabidopsis thaliana HOM05D004005 ORTHO05D004876 9.2e-33 143.7 89 79.8
CDE02G0320 Ceratophyllum demersum HOM05D004005 ORTHO05D004876 9.2e-33 143.7 94 71.3
arahy.Tifrunner.gnm1.ann1.GLFY1J Arachis hypogaea HOM05D004005 ORTHO05D004876 1.2e-32 143.3 94 72.3
arahy.Tifrunner.gnm1.ann1.GWW68B Arachis hypogaea HOM05D004005 ORTHO05D004876 1.2e-32 143.3 94 72.3
Lalb_Chr12g0198871 Lupinus albus HOM05D004005 ORTHO05D004876 1.2e-32 143.3 94 71.3
CDE04G0214 Ceratophyllum demersum HOM05D004005 ORTHO05D004876 1.6e-32 142.9 94 69.1
unitig_0.g2693 Utricularia gibba HOM05D004005 ORTHO05D004876 5.9e-32 141.0 94 71.3
Zm00001eb426980 Zea mays HOM05D004005 ORTHO05D004876 1.0e-31 140.2 94 73.4
Lalb_Chr13g0300621 Lupinus albus HOM05D004005 ORTHO05D004876 6.6e-31 137.5 94 69.1
Actinidia33309 Actinidia chinensis HOM05D004005 ORTHO05D004876 1.1e-30 136.7 98 72.4
Zm00001eb076820 Zea mays HOM05D004005 ORTHO05D004876 2.5e-30 135.6 94 70.2
AUR62039768 Chenopodium quinoa HOM05D004005 ORTHO05D004876 3.3e-30 135.2 86 75.6
Migut.J01404 Erythranthe guttata HOM05D004005 ORTHO05D004876 2.8e-29 132.1 95 66.3
SalBow6G1392 Salvia bowleyana HOM05D004005 ORTHO05D004876 2.6e-27 125.6 94 66.0
Mapoly0020s0008 Marchantia polymorpha HOM05D004005 ORTHO05D004876 2.2e-26 122.5 94 62.8
SMO145G0222 Selaginella moellendorffii HOM05D004005 ORTHO05D004876 2.9e-26 122.1 95 64.2
EL10Ac8g18886 Beta vulgaris HOM05D004005 ORTHO05D004876 6.4e-26 120.9 73 78.1
Pp3c18_12420 Physcomitrium patens HOM05D004005 ORTHO05D004876 8.3e-26 120.6 94 63.8
Oeu024901.3 Olea europaea HOM05D004005 ORTHO05D004876 8.6e-23 110.5 66 78.8
Haze_21258 Corylus avellana HOM05D004005 ORTHO05D004876 7.3e-22 107.5 96 60.4
Hma1.2p1_0028F.1_g017910 Hydrangea macrophylla HOM05D004005 ORTHO05D004876 7.3e-22 107.5 68 76.5
FAN12G2076 Fragaria x ananassa HOM05D004005 ORTHO05D004876 1.3e-18 96.7 96 56.2
CBR_g49493 Chara braunii HOM05D004005 ORTHO05D004876 2.9e-18 95.5 97 52.6
Cre14.g619350 Chlamydomonas reinhardtii HOM05D004005 ORTHO05D004876 2.7e-16 89.0 97 51.5
PRCOL_00006651 Prasinoderma coloniale HOM05D004005 ORTHO05D004876 2.5e-14 82.4 96 46.9


User provided reference genes

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