Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009445 Camellia sinensis var. sinensis HOM05D004000 ORTHO05D004629 2.7e-55 218.4 109 100.0
CSS0031634 Camellia sinensis var. sinensis HOM05D004000 ORTHO05D004629 4.2e-40 167.9 110 80.0
Duzib268G1547 Durio zibethinus HOM05D004000 ORTHO05D004629 1.2e-18 96.7 64 71.9
Thecc.07G186500 Theobroma cacao HOM05D004000 ORTHO05D004629 1.2e-18 96.7 64 71.9
Hund20115 Selenicereus undatus HOM05D004000 ORTHO05D004629 4.5e-18 94.7 46 91.3
Dinv42470 Davidia involucrata HOM05D004000 ORTHO05D004629 5.9e-18 94.4 64 68.8
Sc10g0007870 Simmondsia chinensis HOM05D004000 ORTHO05D004629 5.9e-18 94.4 64 68.8
CSS0006140 Camellia sinensis var. sinensis HOM05D004000 ORTHO05D004629 7.8e-18 94.0 64 68.8
Dinv19580 Davidia involucrata HOM05D004000 ORTHO05D004629 7.8e-18 94.0 64 68.8
Ciclev10005712m.g Citrus clementina HOM05D004000 ORTHO05D004629 1.0e-17 93.6 64 71.9
Duzib187G0240 Durio zibethinus HOM05D004000 ORTHO05D004629 1.7e-17 92.8 64 70.3
Lj2A12G40 Lonicera japonica HOM05D004000 ORTHO05D004629 1.7e-17 92.8 69 68.1
QL04p092275 Quercus lobata HOM05D004000 ORTHO05D004629 2.9e-17 92.0 55 72.7
MD05G1234900 Malus domestica HOM05D004000 ORTHO05D004629 3.8e-17 91.7 60 68.3
ClCG09G022790 Citrullus lanatus HOM05D004000 ORTHO05D004629 5.0e-17 91.3 55 72.7
Eucgr.F01477 Eucalyptus grandis HOM05D004000 ORTHO05D004629 6.6e-17 90.9 64 65.6
Nn8g41219 Nelumbo nucifera HOM05D004000 ORTHO05D004629 6.6e-17 90.9 64 65.6
Actinidia37130 Actinidia chinensis HOM05D004000 ORTHO05D004629 8.6e-17 90.5 53 77.4
Rhsim06G0243100 Rhododendron simsii HOM05D004000 ORTHO05D004629 8.6e-17 90.5 64 68.8
VMungo1080G1629 Vigna mungo HOM05D004000 ORTHO05D004629 8.6e-17 90.5 64 65.6
MELO3C012597.2 Cucumis melo HOM05D004000 ORTHO05D004629 1.1e-16 90.1 64 65.6
CsaV3_7G022990 Cucumis sativus L. HOM05D004000 ORTHO05D004629 1.1e-16 90.1 64 65.6
TAR627G0782 Trochodendron aralioides HOM05D004000 ORTHO05D004629 1.1e-16 90.1 55 70.9
Glyma.08G164900 Glycine max HOM05D004000 ORTHO05D004629 1.5e-16 89.7 64 64.1
Nn2g15475 Nelumbo nucifera HOM05D004000 ORTHO05D004629 1.5e-16 89.7 64 64.1
Phvul.005G049350 Phaseolus vulgaris HOM05D004000 ORTHO05D004629 1.5e-16 89.7 64 64.1
HanXRQChr04g0125331 Helianthus annuus HOM05D004000 ORTHO05D004629 1.9e-16 89.4 70 57.1
Rhsim04G0003200 Rhododendron simsii HOM05D004000 ORTHO05D004629 1.9e-16 89.4 60 68.3
Actinidia24665 Actinidia chinensis HOM05D004000 ORTHO05D004629 2.5e-16 89.0 64 64.1
TAR629G3216 Trochodendron aralioides HOM05D004000 ORTHO05D004629 2.5e-16 89.0 64 64.1
Glyma.15G262200 Glycine max HOM05D004000 ORTHO05D004629 3.3e-16 88.6 64 62.5
Nitab4.5_0000029g0230 Nicotiana tabacum HOM05D004000 ORTHO05D004629 3.3e-16 88.6 55 72.7
Potri.008G083800 Populus trichocarpa HOM05D004000 ORTHO05D004629 3.3e-16 88.6 64 64.1
QL04p091152 Quercus lobata HOM05D004000 ORTHO05D004629 3.3e-16 88.6 60 65.0
THA.LOC104816986 Tarenaya hassleriana HOM05D004000 ORTHO05D004629 3.3e-16 88.6 60 66.7
vmacro09768 Vaccinium macrocarpon HOM05D004000 ORTHO05D004629 3.3e-16 88.6 52 76.9
GSVIVG01036747001 Vitis vinifera HOM05D004000 ORTHO05D004629 3.3e-16 88.6 64 64.1
ATR0605G293 Amborella trichopoda HOM05D004000 ORTHO05D004629 4.3e-16 88.2 85 51.8
Lalb_Chr20g0108471 Lupinus albus HOM05D004000 ORTHO05D004629 4.3e-16 88.2 64 60.9
THA.LOC104810272 Tarenaya hassleriana HOM05D004000 ORTHO05D004629 4.3e-16 88.2 60 65.0
Lj3g0014191 Lotus japonicus HOM05D004000 ORTHO05D004629 5.6e-16 87.8 64 62.5
Medtr2g064415 Medicago truncatula HOM05D004000 ORTHO05D004629 5.6e-16 87.8 56 66.1
Duzib213G0764 Durio zibethinus HOM05D004000 ORTHO05D004629 7.3e-16 87.4 56 73.2
Nn7g36133 Nelumbo nucifera HOM05D004000 ORTHO05D004629 7.3e-16 87.4 59 69.5
Actinidia25397 Actinidia chinensis HOM05D004000 ORTHO05D004629 9.5e-16 87.0 64 64.1
Ca_03197_v3 Cicer arietinum L. HOM05D004000 ORTHO05D004629 9.5e-16 87.0 56 66.1
Oeu034053.1 Olea europaea HOM05D004000 ORTHO05D004629 9.5e-16 87.0 53 69.8
PGR004G2637 Punica granatum HOM05D004000 ORTHO05D004629 9.5e-16 87.0 53 75.5
TPR.G27463 Trifolium pratense HOM05D004000 ORTHO05D004629 1.2e-15 86.7 64 60.9
TAR627G0690 Trochodendron aralioides HOM05D004000 ORTHO05D004629 1.2e-15 86.7 64 62.5
vmacro11690 Vaccinium macrocarpon HOM05D004000 ORTHO05D004629 1.2e-15 86.7 57 73.7
MSTRG.14568 Avicennia marina HOM05D004000 ORTHO05D004629 1.6e-15 86.3 64 64.1
CDE05G1666 Ceratophyllum demersum HOM05D004000 ORTHO05D004629 1.6e-15 86.3 64 62.5
Peaxi162Scf00452g00229 Petunia axillaris HOM05D004000 ORTHO05D004629 1.6e-15 86.3 55 70.9
Psat0s1441g0160 Pisum sativum HOM05D004000 ORTHO05D004629 1.6e-15 86.3 64 60.9
Prupe.4G131300 Prunus persica HOM05D004000 ORTHO05D004629 1.6e-15 86.3 53 69.8
Zm00001eb194650 Zea mays HOM05D004000 ORTHO05D004629 1.6e-15 86.3 53 77.4
arahy.Tifrunner.gnm1.ann1.U2QCB7 Arachis hypogaea HOM05D004000 ORTHO05D004629 2.1e-15 85.9 65 64.6
arahy.Tifrunner.gnm1.ann1.UQZ7YG Arachis hypogaea HOM05D004000 ORTHO05D004629 2.1e-15 85.9 65 64.6
Cc05_g16490 Coffea canephora HOM05D004000 ORTHO05D004629 2.8e-15 85.5 64 64.1
Nitab4.5_0006109g0060 Nicotiana tabacum HOM05D004000 ORTHO05D004629 2.8e-15 85.5 64 64.1
unitig_61.g26121 Utricularia gibba HOM05D004000 ORTHO05D004629 2.8e-15 85.5 64 60.9
RcHm_v2.0_Chr5g0024051 Rosa chinensis HOM05D004000 ORTHO05D004629 3.6e-15 85.1 61 60.7
Aa31LG10G40 Aethionema arabicum HOM05D004000 ORTHO05D004629 6.1e-15 84.3 55 67.3
CANSAT56G1070 Cannabis sativa HOM05D004000 ORTHO05D004629 6.1e-15 84.3 64 60.9
CDE05G0982 Ceratophyllum demersum HOM05D004000 ORTHO05D004629 6.1e-15 84.3 64 60.9
ECA236G3922 Erigeron canadensis HOM05D004000 ORTHO05D004629 6.1e-15 84.3 71 56.3
RcHm_v2.0_Chr3g0465841 Rosa chinensis HOM05D001399 ORTHO05D012334 6.1e-15 84.3 48 70.8
Sed0027383 Sechium edule HOM05D004000 ORTHO05D004629 6.1e-15 84.3 64 60.9
Sopen07g034800 Solanum pennellii HOM05D004000 ORTHO05D004629 6.1e-15 84.3 64 64.1
SGA_v2.0_scaffold49G18199 Striga asiatica HOM05D004000 ORTHO05D004629 6.1e-15 84.3 64 60.9
MSTRG.13084 Avicennia marina HOM05D004000 ORTHO05D004629 8.0e-15 84.0 53 69.8
CARHR087290 Cardamine hirsuta HOM05D004000 ORTHO05D004629 8.0e-15 84.0 64 64.1
TWI59G1464 Tripterygium wilfordii HOM05D004000 ORTHO05D004629 8.0e-15 84.0 64 60.9
EL10Ac2g03287 Beta vulgaris HOM05D004000 ORTHO05D004629 1.0e-14 83.6 54 66.7
CiPaw.11G059500 Carya illinoinensis HOM05D004000 ORTHO05D004629 1.0e-14 83.6 60 60.0
SalBow1G7638 Salvia bowleyana HOM05D004000 ORTHO05D004629 1.0e-14 83.6 64 62.5
SGA_v2.0_scaffold239G44016 Striga asiatica HOM05D004000 ORTHO05D004629 1.0e-14 83.6 64 60.9
FvH4_3g14590 Fragaria vesca HOM05D004000 ORTHO05D004629 1.4e-14 83.2 53 66.0
Lalb_Chr01g0015521 Lupinus albus HOM05D004000 ORTHO05D004629 1.4e-14 83.2 64 59.4
Oeu044963.4 Olea europaea HOM05D004000 ORTHO05D004629 1.4e-14 83.2 64 65.6
unitig_744.g24504 Utricularia gibba HOM05D004000 ORTHO05D004629 1.8e-14 82.8 64 60.9
Thhalv10021347m.g Eutrema salsugineum HOM05D004000 ORTHO05D004629 2.3e-14 82.4 64 64.1
Solyc07g066650.4 Solanum lycopersicum HOM05D004000 ORTHO05D004629 2.3e-14 82.4 64 62.5
TWI38G0870 Tripterygium wilfordii HOM05D004000 ORTHO05D004629 3.0e-14 82.0 64 56.2
A03p37780 Brassica napus HOM05D001323 ORTHO05D001223 5.2e-14 81.3 55 69.1
BraA03t12933Z Brassica rapa HOM05D001323 ORTHO05D001223 5.2e-14 81.3 55 69.1
Migut.H01660 Erythranthe guttata HOM05D004000 ORTHO05D004629 6.8e-14 80.9 64 59.4
PSO339G1394 Papaver somniferum HOM05D004000 ORTHO05D004629 6.8e-14 80.9 64 57.8
PSO384G1790 Papaver somniferum HOM05D004000 ORTHO05D004629 6.8e-14 80.9 64 57.8
Sp3g10920 Schrenkiella parvula HOM05D004000 ORTHO05D004629 8.9e-14 80.5 64 62.5
BcaC09g48261 Brassica carinata HOM05D004000 ORTHO05D004629 1.2e-13 80.1 60 65.0
A01p40750 Brassica napus HOM05D004000 ORTHO05D004629 1.2e-13 80.1 60 65.0
Os06g0233400 Oryza sativa ssp. japonica HOM05D004000 ORTHO05D004629 1.5e-13 79.7 53 69.8
HPP92_020395 Vanilla planifolia HOM05D004000 ORTHO05D004629 1.5e-13 79.7 64 56.2
C03p45850 Brassica napus HOM05D001323 ORTHO05D001223 2.0e-13 79.3 54 68.5
BolC3t16860H Brassica oleracea HOM05D001323 ORTHO05D001223 2.0e-13 79.3 54 68.5
BcaB04g18717 Brassica carinata HOM05D001323 ORTHO05D001223 2.6e-13 79.0 64 60.9
BcaC01g04031 Brassica carinata HOM05D001323 ORTHO05D001223 2.6e-13 79.0 64 60.9
Zm00001eb279840 Zea mays HOM05D004000 ORTHO05D004629 3.4e-13 78.6 53 66.0
HanXRQChr13g0408851 Helianthus annuus HOM05D004000 ORTHO05D004629 4.4e-13 78.2 65 58.5
AL3G24440 Arabidopsis lyrata HOM05D004000 ORTHO05D004629 5.8e-13 77.8 61 63.9
Carub.0003s1212 Capsella rubella HOM05D004000 ORTHO05D004629 5.8e-13 77.8 61 62.3
Ah.01g015680 Amaranthus hybridus HOM05D004000 ORTHO05D004629 7.5e-13 77.4 50 64.0
BcaB06g25514 Brassica carinata HOM05D004000 ORTHO05D004629 7.5e-13 77.4 60 61.7
AUR62040875 Chenopodium quinoa HOM05D004000 ORTHO05D004629 7.5e-13 77.4 67 53.7
Mapoly0065s0055 Marchantia polymorpha HOM05D004000 ORTHO05D004629 7.5e-13 77.4 77 51.9
Gohir.A08G231700 Gossypium hirsutum HOM05D004000 ORTHO05D004629 9.8e-13 77.0 65 60.0
Gorai.004G268800 Gossypium raimondii HOM05D004000 ORTHO05D004629 9.8e-13 77.0 65 60.0
Manes.17G000700 Manihot esculenta HOM05D004000 ORTHO05D004629 9.8e-13 77.0 52 59.6
AT3G12760 Arabidopsis thaliana HOM05D004000 ORTHO05D004629 1.7e-12 76.3 61 62.3
BcaC05g29239 Brassica carinata HOM05D004000 ORTHO05D004629 1.7e-12 76.3 60 60.0
Gohir.D08G252100 Gossypium hirsutum HOM05D004000 ORTHO05D004629 3.7e-12 75.1 65 58.5
Atru.chr1.77 Acer truncatum HOM05D004000 ORTHO05D004629 6.4e-12 74.3 64 54.7
AagrBONN_evm.TU.Sc2ySwM_117.2611 Anthoceros agrestis HOM05D004000 ORTHO05D004629 6.4e-12 74.3 70 54.3
Aa31LG8G60 Aethionema arabicum HOM05D004000 ORTHO05D004629 8.3e-12 73.9 62 59.7
BcaB04g21038 Brassica carinata HOM05D004000 ORTHO05D004629 8.3e-12 73.9 64 59.4
MD10G1211100 Malus domestica HOM05D004000 ORTHO05D004629 1.1e-11 73.6 68 52.9
HanXRQChr13g0410981 Helianthus annuus HOM05D004000 ORTHO05D004629 1.4e-11 73.2 75 46.7
Aqoxy2G00201 Aquilegia oxysepala HOM05D004000 ORTHO05D004629 3.2e-11 72.0 64 51.6
SMO364G0004 Selaginella moellendorffii HOM05D004000 ORTHO05D004629 1.6e-10 69.7 61 55.7
ECA240G0236 Erigeron canadensis HOM05D004000 ORTHO05D004629 1.0e-09 67.0 62 53.2
Pp3c10_17770 Physcomitrium patens HOM05D004000 ORTHO05D004629 1.7e-09 66.2 60 50.0
Pp3c12_24690 Physcomitrium patens HOM05D004000 ORTHO05D004629 1.7e-09 66.2 60 48.3
BraA01t04109Z Brassica rapa HOM05D004000 ORTHO05D004629 3.3e-08 62.0 38 78.9
BolC1t05181H Brassica oleracea HOM05D004000 ORTHO05D004629 5.6e-08 61.2 49 65.3
Peaxi162Scf00006g01617 Petunia axillaris HOM05D004000 ORTHO05D004629 1.4e-06 56.6 46 47.8
C01p52380 Brassica napus HOM05D004000 ORTHO05D004629 1.8e-06 56.2 30 86.7
A05p36700 Brassica napus HOM05D004000 ORTHO05D004629 4.0e-06 55.1 38 65.8
C05p55150 Brassica napus HOM05D004000 ORTHO05D004629 4.0e-06 55.1 38 65.8
BolC5t34183H Brassica oleracea HOM05D004000 ORTHO05D004629 4.0e-06 55.1 38 65.8
CAN.G321.32 Capsicum annuum HOM05D004000 ORTHO05D004629 5.2e-06 54.7 61 39.3
BraA05t22474Z Brassica rapa HOM05D004000 ORTHO05D004629 8.9e-06 53.9 38 63.2
PGSC0003DMG400009664 Solanum tuberosum HOM05D004000 ORTHO05D004629 8.9e-06 53.9 61 36.1


User provided reference genes

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