Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009438 Camellia sinensis var. sinensis HOM05D001312 ORTHO05D008018 1.9e-256 888.6 445 100.0
CSS0027895 Camellia sinensis var. sinensis HOM05D001312 ORTHO05D008018 1.1e-254 882.9 445 99.6
vmacro07336 Vaccinium macrocarpon HOM05D001312 ORTHO05D008018 4.2e-219 764.6 444 84.9
Actinidia39872 Actinidia chinensis HOM05D001312 ORTHO05D008018 2.9e-212 741.9 442 84.2
Rhsim03G0083100 Rhododendron simsii HOM05D001312 ORTHO05D008018 7.6e-205 717.2 418 85.4
TAR633G1314 Trochodendron aralioides HOM05D001312 ORTHO05D001832 7.2e-195 684.1 441 76.0
Thecc.05G079000 Theobroma cacao HOM05D001312 ORTHO05D008018 2.2e-188 662.5 441 73.0
Potri.016G095900 Populus trichocarpa HOM05D001312 ORTHO05D008018 2.7e-186 655.6 443 72.7
PGSC0003DMG400028176 Solanum tuberosum HOM05D001312 ORTHO05D008018 4.7e-186 654.8 442 72.4
Lj3A1005G38 Lonicera japonica HOM05D001312 ORTHO05D008018 8.8e-185 650.6 488 67.6
COL.COLO4_22294 Corchorus olitorius HOM05D001312 ORTHO05D008018 9.7e-184 647.1 443 72.5
Nitab4.5_0004490g0050 Nicotiana tabacum HOM05D001312 ORTHO05D008018 1.4e-182 643.3 471 67.5
Gorai.009G409200 Gossypium raimondii HOM05D001312 ORTHO05D008018 7.0e-182 641.0 435 71.5
TWI53G1380 Tripterygium wilfordii HOM05D001312 ORTHO05D008018 1.2e-181 640.2 438 70.8
RcHm_v2.0_Chr3g0471781 Rosa chinensis HOM05D001312 ORTHO05D008018 1.5e-181 639.8 442 70.6
Gohir.D04G105500 Gossypium hirsutum HOM05D001312 ORTHO05D008018 2.6e-181 639.0 435 71.5
Migut.J00495 Erythranthe guttata HOM05D001312 ORTHO05D008018 1.0e-180 637.1 439 70.6
MSTRG.5801 Avicennia marina HOM05D001312 ORTHO05D008018 5.0e-180 634.8 439 69.2
Cc06_g05050 Coffea canephora HOM05D001312 ORTHO05D008018 8.5e-180 634.0 441 69.8
CiPaw.10G004200 Carya illinoinensis HOM05D001312 ORTHO05D008018 1.1e-179 633.6 438 70.5
FvH4_6g17520 Fragaria vesca HOM05D001312 ORTHO05D008018 5.5e-179 631.3 442 70.1
MD14G1093900 Malus domestica HOM05D001312 ORTHO05D008018 1.6e-178 629.8 443 69.1
CANSAT80G2114 Cannabis sativa HOM05D001312 ORTHO05D008018 8.8e-177 624.0 443 70.2
FAN05G3053 Fragaria x ananassa HOM05D001312 ORTHO05D008018 4.4e-176 621.7 451 68.1
FAN05G0775 Fragaria x ananassa HOM05D001312 ORTHO05D008018 1.3e-175 620.2 451 67.8
Aqoxy1G00967 Aquilegia oxysepala HOM05D001312 ORTHO05D008018 3.7e-175 618.6 442 69.5
Solyc10g083710.2 Solanum lycopersicum HOM05D001312 ORTHO05D008018 1.8e-174 616.3 442 69.0
arahy.Tifrunner.gnm1.ann1.42C0B0 Arachis hypogaea HOM05D001312 ORTHO05D008018 5.3e-174 614.8 441 67.3
arahy.Tifrunner.gnm1.ann1.C1UQYX Arachis hypogaea HOM05D001312 ORTHO05D008018 5.3e-174 614.8 441 67.3
Cpa.g.sc5.99 Carica papaya HOM05D001312 ORTHO05D008018 5.3e-174 614.8 435 69.7
FAN14G3191 Fragaria x ananassa HOM05D001312 ORTHO05D008018 5.3e-174 614.8 468 66.0
Phvul.007G224100 Phaseolus vulgaris HOM05D001312 ORTHO05D008018 7.0e-174 614.4 436 69.0
TPR.G5684 Trifolium pratense HOM05D001312 ORTHO05D008018 7.0e-174 614.4 436 67.7
Dinv35859 Davidia involucrata HOM05D001312 ORTHO05D008018 2.0e-173 612.8 362 82.6
Lsat_1_v5_gn_1_50640 Lactuca sativa HOM05D001312 ORTHO05D008018 4.5e-173 611.7 434 68.0
QL07p040881 Quercus lobata HOM05D001312 ORTHO05D008018 5.9e-173 611.3 509 62.1
GSVIVG01033751001 Vitis vinifera HOM05D001312 ORTHO05D008018 1.0e-172 610.5 382 77.7
Lj5g0006635 Lotus japonicus HOM05D001312 ORTHO05D008018 2.9e-172 609.0 438 68.0
ECA248G1880 Erigeron canadensis HOM05D001312 ORTHO05D008018 1.1e-171 607.1 436 67.0
SalBow3G2703 Salvia bowleyana HOM05D001312 ORTHO05D008018 3.2e-171 605.5 466 65.2
VMungo0720G0477 Vigna mungo HOM05D001312 ORTHO05D008018 3.2e-171 605.5 434 68.4
Glyma.10G065300 Glycine max HOM05D001312 ORTHO05D008018 5.5e-171 604.7 434 68.2
Medtr1g061560 Medicago truncatula HOM05D001312 ORTHO05D008018 2.1e-170 602.8 434 67.3
BcaC06g32083 Brassica carinata HOM05D001312 ORTHO05D008018 1.8e-169 599.7 436 66.7
FAN09G2766 Fragaria x ananassa HOM05D001312 ORTHO05D008018 8.8e-169 597.4 468 64.3
Sabra16G0101200 Salix brachista HOM05D001312 ORTHO05D008018 3.3e-168 595.5 550 57.5
CsaV3_6G040350 Cucumis sativus L. HOM05D001312 ORTHO05D008018 4.4e-168 595.1 443 65.9
AT5G03770 Arabidopsis thaliana HOM05D001312 ORTHO05D008018 1.7e-167 593.2 434 67.1
Thhalv10013569m.g Eutrema salsugineum HOM05D001312 ORTHO05D008018 1.7e-167 593.2 436 66.5
Eucgr.A01566 Eucalyptus grandis HOM05D001312 ORTHO05D008018 2.2e-167 592.8 435 66.4
Sed0012062 Sechium edule HOM05D001312 ORTHO05D008018 2.8e-167 592.4 443 66.4
Sp6g38960 Schrenkiella parvula HOM05D001312 ORTHO05D008018 8.3e-167 590.9 437 65.7
FAN02G1263 Fragaria x ananassa HOM05D001312 ORTHO05D008018 1.1e-166 590.5 442 67.0
ClCG04G009690 Citrullus lanatus HOM05D001312 ORTHO05D008018 3.1e-166 589.0 440 66.6
A10p32330 Brassica napus HOM05D001312 ORTHO05D008018 7.0e-166 587.8 437 66.1
BraA10t45274Z Brassica rapa HOM05D001312 ORTHO05D008018 7.0e-166 587.8 437 66.1
Oeu039841.2 Olea europaea HOM05D001312 ORTHO05D008018 3.5e-165 585.5 568 55.3
C09p73160 Brassica napus HOM05D001312 ORTHO05D008018 5.9e-165 584.7 437 66.1
Carub.0006s0268 Capsella rubella HOM05D001312 ORTHO05D008018 7.7e-165 584.3 439 65.6
PSO063G2793 Papaver somniferum HOM05D001312 ORTHO05D008018 2.9e-164 582.4 468 60.5
BolC9t60051H Brassica oleracea HOM05D001312 ORTHO05D008018 1.1e-163 580.5 437 65.9
HanXRQChr01g0028401 Helianthus annuus HOM05D001312 ORTHO05D008018 1.1e-163 580.5 433 65.4
AL6G13310 Arabidopsis lyrata HOM05D001312 ORTHO05D008018 4.2e-163 578.6 456 63.6
Atru.BG.216.p Acer truncatum HOM05D001312 ORTHO05D008018 1.2e-162 577.0 433 68.4
Nn6g35083 Nelumbo nucifera HOM05D001312 ORTHO05D008018 1.2e-162 577.0 440 66.8
PSO339G3022 Papaver somniferum HOM05D001312 ORTHO05D008018 8.0e-162 574.3 430 64.2
Sc02g0001220 Simmondsia chinensis HOM05D001312 ORTHO05D008018 1.0e-161 573.9 387 72.1
SGA_v2.0_scaffold40G15429 Striga asiatica HOM05D001312 ORTHO05D008018 5.2e-161 571.6 447 63.8
Nitab4.5_0000132g0320 Nicotiana tabacum HOM05D001312 ORTHO05D008018 3.4e-160 568.9 470 62.1
EL10Ac7g16768 Beta vulgaris HOM05D001312 ORTHO05D008018 4.4e-160 568.5 439 63.6
Haze_19515 Corylus avellana HOM05D001312 ORTHO05D008018 7.5e-160 567.8 438 65.3
Gohir.A04G066728 Gossypium hirsutum HOM05D001312 ORTHO05D008018 4.8e-159 565.1 382 72.8
Manes.08G018900 Manihot esculenta HOM05D001312 ORTHO05D008018 8.3e-159 564.3 380 73.4
THA.LOC104816378 Tarenaya hassleriana HOM05D001312 ORTHO05D008018 8.3e-159 564.3 439 63.3
MELO3C024510.2 Cucumis melo HOM05D001312 ORTHO05D008018 9.5e-155 550.8 389 68.9
Ca_11617_v3 Cicer arietinum L. HOM05D001312 ORTHO05D008018 3.5e-149 532.3 412 65.0
CiPaw.09G007400 Carya illinoinensis HOM05D001312 ORTHO05D008018 8.0e-146 521.2 370 70.8
ATR0820G168 Amborella trichopoda HOM05D001312 ORTHO05D008018 2.2e-143 513.1 441 58.3
Peaxi162Scf00110g01214 Petunia axillaris HOM05D001312 ORTHO05D008018 1.9e-142 510.0 458 59.4
SEGI_32755 Sequoiadendron giganteum HOM05D001312 ORTHO05D008018 7.8e-141 504.6 429 58.5
Hma1.2p1_0651F.1_g195720 Hydrangea macrophylla HOM05D001312 ORTHO05D008018 1.5e-136 490.3 324 76.2
Zm00001eb147410 Zea mays HOM05D001312 ORTHO05D008018 1.5e-136 490.3 429 56.2
Atru.chr8.1664 Acer truncatum HOM05D001312 ORTHO05D008018 7.0e-134 481.5 318 73.9
Aa31LG1G21490 Aethionema arabicum HOM05D001312 ORTHO05D008018 1.7e-132 476.9 408 60.8
unitig_744.g24689 Utricularia gibba HOM05D001312 ORTHO05D008018 3.6e-130 469.2 425 56.0
Prupe.7G120300 Prunus persica HOM05D001312 ORTHO05D008018 7.5e-128 461.5 322 70.8
Ah.15g091190 Amaranthus hybridus HOM05D001312 ORTHO05D008018 1.7e-127 460.3 384 61.5
SMO364G0357 Selaginella moellendorffii HOM05D001312 ORTHO05D008018 3.0e-116 422.9 427 50.6
AagrBONN_evm.TU.Sc2ySwM_344.3661 Anthoceros agrestis HOM05D001312 ORTHO05D008018 1.1e-115 421.0 430 50.2
MBI01_g23067_MAGBIO Magnolia biondii HOM05D001312 ORTHO05D008018 9.6e-115 417.9 293 69.3
Pp3c21_8090 Physcomitrium patens HOM05D001312 ORTHO05D008018 4.8e-114 415.6 430 48.1
CARHR209530 Cardamine hirsuta HOM05D001312 ORTHO05D008018 9.9e-112 407.9 287 68.6
DCAR_015029 Daucus carota HOM05D001312 ORTHO05D008018 1.4e-110 404.1 313 64.5
Psat6g076240 Pisum sativum HOM05D001312 ORTHO05D008018 1.6e-109 400.6 280 72.9
Mapoly0002s0209 Marchantia polymorpha HOM05D001312 ORTHO05D008018 1.3e-106 391.0 431 47.1
Ciclev10032390m.g Citrus clementina HOM05D001312 ORTHO05D008018 2.9e-103 379.8 251 74.5
CBR_g874 Chara braunii HOM05D001312 ORTHO05D008018 7.9e-93 345.1 371 49.6
Hund20444 Selenicereus undatus HOM05D001312 ORTHO05D008018 5.0e-87 325.9 288 58.0
Sopen10g033180 Solanum pennellii HOM05D001312 ORTHO05D008018 2.6e-67 260.4 183 70.5
Os01g0857300 Oryza sativa ssp. japonica HOM05D001312 ORTHO05D008018 1.9e-62 244.2 190 63.7
AUR62037894 Chenopodium quinoa HOM05D001312 ORTHO05D008018 1.8e-60 237.7 286 47.6
Lalb_Chr21g0315421 Lupinus albus HOM05D001312 ORTHO05D008018 3.5e-56 223.4 155 71.6
AUR62033601 Chenopodium quinoa HOM05D001312 ORTHO05D008018 6.8e-52 209.1 307 41.0
Lalb_Chr21g0315431 Lupinus albus HOM05D001312 ORTHO05D008018 1.2e-51 208.4 154 68.2
HPP92_006796 Vanilla planifolia HOM05D001312 ORTHO05D008018 1.5e-51 208.0 332 38.6
Ciclev10013092m.g Citrus clementina HOM05D001312 ORTHO05D008018 5.4e-49 199.5 132 74.2
MBI01_g48091_MAGBIO Magnolia biondii HOM05D001312 ORTHO05D008018 8.5e-47 192.2 149 65.1
HPP92_006792 Vanilla planifolia HOM05D001312 ORTHO05D008018 4.0e-44 183.3 211 46.0
arahy.Tifrunner.gnm1.ann1.IWGZ26 Arachis hypogaea HOM05D001312 ORTHO05D008018 8.3e-42 175.6 155 60.6
Glyma.13G150200 Glycine max HOM05D001312 ORTHO05D008018 1.7e-39 167.9 143 61.5
CARHR208850 Cardamine hirsuta HOM05D001312 ORTHO05D008018 6.1e-37 159.5 122 63.9
DCAR_015030 Daucus carota HOM05D001312 ORTHO05D008018 7.5e-35 152.5 98 71.4
Lalb_Chr21g0315441 Lupinus albus HOM05D001312 ORTHO05D008018 4.9e-34 149.8 93 71.0
Zm00001eb059120 Zea mays HOM05D000212 ORTHO05D008018 3.9e-31 140.2 96 63.5
CARHR208860 Cardamine hirsuta HOM05D001312 ORTHO05D008018 2.8e-29 134.0 92 71.7
Cre13.g583100 Chlamydomonas reinhardtii HOM05D001312 ORTHO05D008018 1.2e-27 128.6 386 28.8
arahy.Tifrunner.gnm1.ann1.UHL2QJ Arachis hypogaea HOM05D000705 ORTHO05D008018 6.0e-16 89.7 154 34.4
Zm00001eb009840 Zea mays HOM05D001312 ORTHO05D008018 1.6e-13 81.6 63 57.1
VMungo0251G1834 Vigna mungo HOM05D001312 ORTHO05D008018 3.6e-13 80.5 50 68.0
Zm00001eb059130 Zea mays HOM05D000212 ORTHO05D002824 3.6e-13 80.5 55 65.5
A03p01370 Brassica napus HOM05D001312 ORTHO05D008018 9.9e-11 72.4 70 48.6
CARHR208870 Cardamine hirsuta HOM05D001312 ORTHO05D008018 9.9e-11 72.4 68 51.5
C03p01710 Brassica napus HOM05D001312 ORTHO05D008018 9.2e-09 65.9 69 46.4
BolC3t12726H Brassica oleracea HOM05D001312 ORTHO05D008018 9.2e-09 65.9 69 46.4
BraA03t09516Z Brassica rapa HOM05D001312 ORTHO05D008018 1.5e-06 58.5 58 48.3
Rhsim03G0100700 Rhododendron simsii HOM05D005422 ORTHO05D006578 5.6e-06 56.6 39 66.7


User provided reference genes

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