Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009428 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 1.6e-216 755.7 378 100.0
CSS0019709 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 2.2e-189 665.6 340 97.9
CSS0049632 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 1.5e-185 652.9 340 95.9
CSS0006550 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 3.6e-179 631.7 342 94.2
CSS0029746 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 2.6e-169 599.0 340 90.6
Dinv42816 Davidia involucrata HOM05D006038 ORTHO05D007547 8.9e-162 573.9 342 82.2
Dinv43284 Davidia involucrata HOM05D006038 ORTHO05D007547 8.9e-162 573.9 342 82.2
CSS0047764 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 8.6e-157 557.4 340 85.0
CANSAT11G1787 Cannabis sativa HOM05D006038 ORTHO05D007547 2.8e-139 499.2 343 69.1
MD10G1281400 Malus domestica HOM05D006038 ORTHO05D007547 9.9e-137 490.7 336 74.4
TAR625G0922 Trochodendron aralioides HOM05D006038 ORTHO05D007547 1.3e-136 490.3 338 71.6
Rhsim03G0259500 Rhododendron simsii HOM05D006038 ORTHO05D007547 4.1e-135 485.3 346 70.2
GSVIVG01023690001 Vitis vinifera HOM05D006038 ORTHO05D007547 5.4e-135 485.0 345 71.3
QL02p094222 Quercus lobata HOM05D006038 ORTHO05D007547 4.6e-134 481.9 352 69.6
Prupe.1G102000 Prunus persica HOM05D006038 ORTHO05D007547 6.6e-133 478.0 343 70.3
Lalb_Chr13g0300671 Lupinus albus HOM05D006038 ORTHO05D007547 7.3e-132 474.6 335 70.4
Thecc.09G154200 Theobroma cacao HOM05D006038 ORTHO05D007547 7.3e-132 474.6 348 68.7
Nn8g40105 Nelumbo nucifera HOM05D006038 ORTHO05D007547 8.1e-131 471.1 330 70.0
Actinidia38659 Actinidia chinensis HOM05D006038 ORTHO05D007547 1.1e-130 470.7 348 68.4
Lj4g0023904 Lotus japonicus HOM05D006038 ORTHO05D007547 1.4e-130 470.3 344 69.2
Lsat_1_v5_gn_8_64821 Lactuca sativa HOM05D006038 ORTHO05D007547 6.9e-130 468.0 340 68.8
Cfa020781 Carpinus fangiana HOM05D006038 ORTHO05D007547 4.4e-129 465.3 347 69.5
CiPaw.15G164200 Carya illinoinensis HOM05D006038 ORTHO05D007547 1.3e-128 463.8 346 70.5
Ca_21155_v3 Cicer arietinum L. HOM05D006038 ORTHO05D007547 1.3e-128 463.8 342 69.3
Aqoxy7G02400 Aquilegia oxysepala HOM05D006038 ORTHO05D007547 6.4e-128 461.5 336 67.0
Psat4g010160 Pisum sativum HOM05D006038 ORTHO05D007547 2.4e-127 459.5 344 67.4
TWI63G0196 Tripterygium wilfordii HOM05D006038 ORTHO05D007547 3.2e-127 459.1 348 64.7
Glyma.02G206900 Glycine max HOM05D006038 ORTHO05D007547 4.2e-127 458.8 332 69.0
Sed0013580 Sechium edule HOM05D006038 ORTHO05D007547 1.2e-126 457.2 344 65.4
RcHm_v2.0_Chr4g0405491 Rosa chinensis HOM05D006038 ORTHO05D007547 2.7e-126 456.1 332 69.6
Glyma.17G071100 Glycine max HOM05D006038 ORTHO05D007547 6.0e-126 454.9 332 69.3
TPR.G22112 Trifolium pratense HOM05D006038 ORTHO05D007547 3.0e-125 452.6 344 66.3
Haze_19138 Corylus avellana HOM05D006038 ORTHO05D007547 5.1e-125 451.8 373 64.3
CsaV3_2G007740 Cucumis sativus L. HOM05D006038 ORTHO05D007547 2.5e-124 449.5 342 64.3
FAN17G0258 Fragaria x ananassa HOM05D006038 ORTHO05D007547 2.5e-124 449.5 332 67.8
PGR114G0005 Punica granatum HOM05D006038 ORTHO05D007547 3.3e-124 449.1 350 64.6
PGR142G2424 Punica granatum HOM05D006038 ORTHO05D007547 3.3e-124 449.1 350 64.6
MELO3C004111.2 Cucumis melo HOM05D006038 ORTHO05D007547 4.3e-124 448.7 342 64.3
DCAR_020091 Daucus carota HOM05D006038 ORTHO05D007547 9.6e-124 447.6 342 67.5
FAN22G1283 Fragaria x ananassa HOM05D006038 ORTHO05D007547 1.3e-123 447.2 332 67.2
PGSC0003DMG400011212 Solanum tuberosum HOM05D006038 ORTHO05D007547 1.3e-123 447.2 342 66.4
FvH4_4g09770 Fragaria vesca HOM05D006038 ORTHO05D007547 4.8e-123 445.3 332 67.5
Sopen07g002150 Solanum pennellii HOM05D006038 ORTHO05D007547 6.2e-123 444.9 342 66.4
Gohir.A05G007900 Gossypium hirsutum HOM05D006038 ORTHO05D007547 8.1e-123 444.5 348 65.2
VMungo1215G1375 Vigna mungo HOM05D006038 ORTHO05D007547 1.4e-122 443.7 333 67.6
Gohir.D05G008700 Gossypium hirsutum HOM05D006038 ORTHO05D007547 1.8e-122 443.4 348 65.2
Gorai.009G008900 Gossypium raimondii HOM05D006038 ORTHO05D007547 1.8e-122 443.4 348 65.2
PSO170G4900 Papaver somniferum HOM05D006038 ORTHO05D007547 1.8e-122 443.4 336 67.3
MBI15_g26068_MAGBIO Magnolia biondii HOM05D006038 ORTHO05D007547 4.0e-122 442.2 330 67.0
Medtr4g130280 Medicago truncatula HOM05D006038 ORTHO05D007547 1.5e-121 440.3 344 65.4
Phvul.003G153400 Phaseolus vulgaris HOM05D006038 ORTHO05D007547 2.6e-121 439.5 333 67.0
Solyc07g006010.3 Solanum lycopersicum HOM05D006038 ORTHO05D007547 2.6e-121 439.5 342 65.8
PSO017G0013 Papaver somniferum HOM05D006038 ORTHO05D007547 5.8e-121 438.3 336 66.4
ECA236G4218 Erigeron canadensis HOM05D006038 ORTHO05D007547 7.6e-121 438.0 341 66.3
FAN07G2585 Fragaria x ananassa HOM05D006038 ORTHO05D007547 9.9e-121 437.6 332 66.6
Cc06_g14480 Coffea canephora HOM05D006038 ORTHO05D007547 3.2e-119 432.6 336 66.4
Nitab4.5_0002809g0020 Nicotiana tabacum HOM05D006038 ORTHO05D007547 3.5e-118 429.1 359 62.4
ClCG02G014260 Citrullus lanatus HOM05D006038 ORTHO05D007547 2.3e-117 426.4 360 59.7
Manes.14G113700 Manihot esculenta HOM05D006038 ORTHO05D007547 2.3e-117 426.4 348 61.5
Cpa.g.sc199.14 Carica papaya HOM05D006038 ORTHO05D007547 1.9e-116 423.3 347 64.0
Hund08960 Selenicereus undatus HOM05D006038 ORTHO05D007547 1.9e-116 423.3 337 66.2
Peaxi162Scf00563g00418 Petunia axillaris HOM05D006038 ORTHO05D007547 2.5e-116 422.9 339 61.9
Nitab4.5_0001036g0170 Nicotiana tabacum HOM05D006038 ORTHO05D007547 4.3e-116 422.2 360 61.4
EL10Ac8g18905 Beta vulgaris HOM05D006038 ORTHO05D007547 1.5e-113 413.7 340 65.0
CAN.G1190.21 Capsicum annuum HOM05D006038 ORTHO05D007547 2.0e-113 413.3 338 63.6
CDE04G0171 Ceratophyllum demersum HOM05D006038 ORTHO05D007547 2.6e-113 412.9 332 61.1
Atru.chr7.352 Acer truncatum HOM05D006038 ORTHO05D007547 9.3e-111 404.4 352 61.1
MSTRG.6162 Avicennia marina HOM05D006038 ORTHO05D007547 1.8e-109 400.2 344 59.6
THA.LOC104803556 Tarenaya hassleriana HOM05D006038 ORTHO05D007547 1.8e-109 400.2 342 59.4
BraA03t15077Z Brassica rapa HOM05D006038 ORTHO05D007547 3.0e-109 399.4 339 61.9
A03p60370 Brassica napus HOM05D006038 ORTHO05D007547 3.9e-109 399.1 336 61.9
Sp7g28720 Schrenkiella parvula HOM05D006038 ORTHO05D007547 8.7e-109 397.9 344 61.6
AL7G21280 Arabidopsis lyrata HOM05D006038 ORTHO05D007547 1.9e-108 396.7 346 60.7
AT4G30840 Arabidopsis thaliana HOM05D006038 ORTHO05D007547 1.9e-108 396.7 347 60.8
Ciclev10008825m.g Citrus clementina HOM05D006038 ORTHO05D007547 5.6e-108 395.2 343 61.2
Ah.14g084370 Amaranthus hybridus HOM05D001135 ORTHO05D001005 7.4e-108 394.8 333 62.5
BcaNung02736 Brassica carinata HOM05D006038 ORTHO05D007547 9.6e-108 394.4 339 61.4
C07p58240 Brassica napus HOM05D006038 ORTHO05D007547 1.3e-107 394.0 334 61.4
Migut.J01393 Erythranthe guttata HOM05D006038 ORTHO05D007547 1.6e-107 393.7 341 60.4
HanXRQChr06g0179781 Helianthus annuus HOM05D006038 ORTHO05D007547 1.6e-107 393.7 341 60.1
SGA_v2.0_scaffold265G46074 Striga asiatica HOM05D006038 ORTHO05D007547 1.6e-107 393.7 356 58.7
BolC7t46282H Brassica oleracea HOM05D006038 ORTHO05D007547 3.7e-107 392.5 334 61.1
Potri.006G180300 Populus trichocarpa HOM05D006038 ORTHO05D007547 6.2e-107 391.7 355 58.3
Sabra06G0137300 Salix brachista HOM05D006038 ORTHO05D007547 8.1e-107 391.3 355 57.5
Carub.0007s0972 Capsella rubella HOM05D006038 ORTHO05D007547 1.1e-106 391.0 347 59.9
vmacro06051 Vaccinium macrocarpon HOM05D006038 ORTHO05D007547 1.1e-106 391.0 356 61.0
CARHR238700 Cardamine hirsuta HOM05D006038 ORTHO05D007547 1.8e-106 390.2 346 59.8
BcaNung01557 Brassica carinata HOM05D006038 ORTHO05D007547 2.6e-105 386.3 335 61.2
Eucgr.K03188 Eucalyptus grandis HOM05D006038 ORTHO05D007547 1.0e-104 384.4 342 58.2
ATR0580G061 Amborella trichopoda HOM05D006038 ORTHO05D007547 1.9e-103 380.2 334 57.5
Aa31LG2G19530 Aethionema arabicum HOM05D006038 ORTHO05D007547 2.5e-103 379.8 345 58.0
HPP92_020613 Vanilla planifolia HOM05D006038 ORTHO05D007547 5.5e-103 378.6 343 60.1
CSS0027410 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 2.3e-101 373.2 211 91.5
CSS0009266 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 5.1e-101 372.1 211 90.5
CSS0013086 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 2.8e-99 366.3 211 90.5
Dinv41342 Davidia involucrata HOM05D006038 ORTHO05D007547 9.0e-98 361.3 227 76.2
Sc14g0000990 Simmondsia chinensis HOM05D006038 ORTHO05D007547 1.2e-97 360.9 346 59.0
AUR62028377 Chenopodium quinoa HOM05D006038 ORTHO05D007547 7.2e-87 325.1 236 68.6
AUR62025374 Chenopodium quinoa HOM05D006038 ORTHO05D007547 7.9e-86 321.6 221 72.9
arahy.Tifrunner.gnm1.ann1.3R6I6F Arachis hypogaea HOM05D006038 ORTHO05D007547 7.4e-84 315.1 225 70.2
Thhalv10025548m.g Eutrema salsugineum HOM05D006038 ORTHO05D007547 9.4e-79 298.1 311 52.7
Os08g0266600 Oryza sativa ssp. japonica HOM05D006038 ORTHO05D007547 1.1e-76 291.2 340 49.1
Zm00001eb177980 Zea mays HOM05D006038 ORTHO05D007547 8.2e-75 285.0 333 49.5
AagrBONN_evm.TU.Sc2ySwM_117.2538 Anthoceros agrestis HOM05D006038 ORTHO05D007547 5.5e-71 272.3 397 38.8
SMO367G0193 Selaginella moellendorffii HOM05D006038 ORTHO05D007547 1.2e-70 271.2 332 42.5
Lj7A464T42 Lonicera japonica HOM05D006038 ORTHO05D007547 2.6e-68 263.5 211 66.4
COL.COLO4_05400 Corchorus olitorius HOM05D006038 ORTHO05D007547 2.8e-67 260.0 216 60.2
Cfa020780 Carpinus fangiana HOM05D006038 ORTHO05D007547 1.1e-66 258.1 216 63.9
CSS0024276 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 6.5e-64 248.8 214 65.9
SHI18668 Sapria himalayana HOM05D006038 ORTHO05D007547 2.5e-63 246.9 313 45.7
Oeu027617.1 Olea europaea HOM05D006038 ORTHO05D007547 3.2e-63 246.5 151 74.8
CSS0022095 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 5.9e-49 199.1 106 92.5
A01p07320 Brassica napus HOM05D006038 ORTHO05D007547 3.0e-45 186.8 242 47.5
Lj7A464G38 Lonicera japonica HOM05D006038 ORTHO05D007547 2.0e-44 184.1 132 70.5
CBR_g22430 Chara braunii HOM05D006038 ORTHO05D007547 5.9e-41 172.6 364 31.6
SEGI_08614 Sequoiadendron giganteum HOM05D006038 ORTHO05D007547 3.1e-37 160.2 131 58.0
Pp3c6_28770 Physcomitrium patens HOM05D006038 ORTHO05D007547 2.9e-27 127.1 143 44.1
CSS0034156 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 2.7e-17 94.0 47 95.7
CSS0047172 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 2.7e-17 94.0 51 94.1
CSS0031036 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 1.1e-15 88.6 51 88.2
QL93p0107_0059 Quercus lobata HOM05D006038 ORTHO05D007547 1.3e-11 75.1 56 60.7
Cre02.g090600 Chlamydomonas reinhardtii HOM05D006038 ORTHO05D007547 2.4e-10 70.9 158 30.4
BcaNung03435 Brassica carinata HOM05D001147 ORTHO05D000823 2.7e-09 67.4 157 33.8
Zm00001eb124580 Zea mays HOM05D006038 ORTHO05D007547 9.6e-07 58.9 42 66.7
Zm00001eb038770 Zea mays HOM05D006038 ORTHO05D007547 6.2e-06 56.2 43 65.1
Zm00001eb046820 Zea mays HOM05D006038 ORTHO05D007547 6.2e-06 56.2 43 65.1
Zm00001eb051760 Zea mays HOM05D006038 ORTHO05D007547 6.2e-06 56.2 43 65.1
Zm00001eb253640 Zea mays HOM05D006038 ORTHO05D007547 6.2e-06 56.2 43 65.1
Zm00001eb369920 Zea mays HOM05D006038 ORTHO05D007547 6.2e-06 56.2 48 58.3


User provided reference genes

Program Settings