Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009424 Camellia sinensis var. sinensis HOM05D001812 ORTHO05D001874 3.4e-83 311.6 157 100.0
Dinv10349 Davidia involucrata HOM05D001812 ORTHO05D001874 6.5e-50 201.1 146 69.9
CSS0010806 Camellia sinensis var. sinensis HOM05D001812 ORTHO05D001874 3.0e-47 192.2 146 68.5
CSS0025887 Camellia sinensis var. sinensis HOM05D001812 ORTHO05D001874 3.0e-47 192.2 146 68.5
vmacro09635 Vaccinium macrocarpon HOM05D001812 ORTHO05D001874 5.7e-46 188.0 147 66.0
Dinv40874 Davidia involucrata HOM05D001812 ORTHO05D001874 2.5e-41 172.6 151 63.6
Prupe.6G025400 Prunus persica HOM05D001812 ORTHO05D001874 2.6e-38 162.5 149 58.4
Cfa016913 Carpinus fangiana HOM05D001827 ORTHO05D001790 7.4e-38 161.0 148 59.5
CSS0041025 Camellia sinensis var. sinensis HOM05D001812 ORTHO05D001874 1.3e-37 160.2 80 98.8
CiPaw.12G139300 Carya illinoinensis HOM05D001812 ORTHO05D001874 1.7e-37 159.8 148 56.8
MD03G1029300 Malus domestica HOM05D001812 ORTHO05D001874 2.8e-37 159.1 149 56.4
TAR629G2670 Trochodendron aralioides HOM05D001812 ORTHO05D001874 3.1e-36 155.6 146 56.2
Haze_09843 Corylus avellana HOM05D001812 ORTHO05D001874 1.6e-35 153.3 149 57.7
GSVIVG01014708001 Vitis vinifera HOM05D001812 ORTHO05D001874 2.0e-35 152.9 148 56.8
Atru.chr2.3711_Atru.chr2.3712 Acer truncatum HOM05D001812 ORTHO05D001874 2.2e-34 149.4 150 57.3
Oeu050274.1 Olea europaea HOM05D001812 ORTHO05D001874 2.2e-34 149.4 147 53.1
RcHm_v2.0_Chr5g0076471 Rosa chinensis HOM05D001812 ORTHO05D001874 3.8e-34 148.7 148 51.4
Manes.15G069800 Manihot esculenta HOM05D001812 ORTHO05D001874 6.5e-34 147.9 148 52.7
Cc05_g15110 Coffea canephora HOM05D001812 ORTHO05D001874 8.5e-34 147.5 147 55.1
Lj1C892G3 Lonicera japonica HOM05D001827 ORTHO05D001790 8.5e-34 147.5 154 56.5
Manes.15G058500 Manihot esculenta HOM05D001812 ORTHO05D001874 1.5e-33 146.7 148 53.4
Oeu017986.1 Olea europaea HOM05D001812 ORTHO05D001874 2.5e-33 146.0 145 51.7
MBI14_g08890_MAGBIO Magnolia biondii HOM05D001812 ORTHO05D001874 7.2e-33 144.4 146 53.4
Peaxi162Scf00139g01125 Petunia axillaris HOM05D001812 ORTHO05D001874 1.2e-32 143.7 145 50.3
MBI14_g13532_MAGBIO Magnolia biondii HOM05D001812 ORTHO05D001874 1.6e-32 143.3 146 53.4
FAN16G0254 Fragaria x ananassa HOM05D001812 ORTHO05D001874 4.7e-32 141.7 148 49.3
Nn1g07548 Nelumbo nucifera HOM05D001812 ORTHO05D001874 1.4e-31 140.2 147 50.3
Nitab4.5_0026002g0010 Nicotiana tabacum HOM05D001812 ORTHO05D001874 2.3e-31 139.4 147 48.3
Nitab4.5_0004583g0120 Nicotiana tabacum HOM05D001812 ORTHO05D001874 4.0e-31 138.7 147 48.3
DCAR_022609 Daucus carota HOM05D001812 ORTHO05D001874 5.2e-31 138.3 150 52.7
QL08p003558 Quercus lobata HOM05D001812 ORTHO05D001874 5.2e-31 138.3 147 49.7
MD11G1032600 Malus domestica HOM05D001812 ORTHO05D001874 8.8e-31 137.5 147 54.4
Sopen07g033900 Solanum pennellii HOM05D001812 ORTHO05D001874 8.8e-31 137.5 147 46.3
FvH4_3g42740 Fragaria vesca HOM05D001812 ORTHO05D001874 1.5e-30 136.7 148 48.0
PGSC0003DMG400022270 Solanum tuberosum HOM05D001812 ORTHO05D001874 1.5e-30 136.7 147 46.9
FAN11G0011 Fragaria x ananassa HOM05D001812 ORTHO05D001874 2.0e-30 136.3 148 48.0
MSTRG.7005 Avicennia marina HOM05D001812 ORTHO05D001874 2.6e-30 136.0 145 48.3
CAN.G623.25 Capsicum annuum HOM05D001812 ORTHO05D001874 3.3e-30 135.6 147 49.7
Ciclev10008145m.g Citrus clementina HOM05D001812 ORTHO05D001874 3.3e-30 135.6 151 51.0
SalBow8G1247 Salvia bowleyana HOM05D001812 ORTHO05D001874 3.3e-30 135.6 145 49.0
SalBow8G1672 Salvia bowleyana HOM05D001812 ORTHO05D001874 3.3e-30 135.6 145 49.0
Duzib213G0767 Durio zibethinus HOM05D001812 ORTHO05D001874 4.4e-30 135.2 148 50.7
Solyc07g065690.3 Solanum lycopersicum HOM05D001812 ORTHO05D001874 4.4e-30 135.2 147 45.6
Potri.001G369300 Populus trichocarpa HOM05D001812 ORTHO05D001874 1.3e-29 133.7 149 51.7
FAN21G0625 Fragaria x ananassa HOM05D001812 ORTHO05D001874 4.8e-29 131.7 148 48.0
MBI14_g08896_MAGBIO Magnolia biondii HOM05D001812 ORTHO05D001874 1.4e-28 130.2 146 47.9
CANSAT11G0060 Cannabis sativa HOM05D001812 ORTHO05D001874 3.1e-28 129.0 153 49.0
Sabra16G0242200 Salix brachista HOM05D001812 ORTHO05D001874 3.1e-28 129.0 148 51.4
Gohir.A01G092800 Gossypium hirsutum HOM05D001812 ORTHO05D001874 4.1e-28 128.6 146 52.7
Thecc.07G010200 Theobroma cacao HOM05D001812 ORTHO05D001874 5.3e-28 128.3 148 50.7
CARHR234200 Cardamine hirsuta HOM05D001812 ORTHO05D001874 2.0e-27 126.3 155 49.0
Thhalv10025213m.g Eutrema salsugineum HOM05D001812 ORTHO05D001874 2.0e-27 126.3 155 49.0
Gohir.D01G077300 Gossypium hirsutum HOM05D001812 ORTHO05D001874 2.0e-27 126.3 146 52.1
PSO210G2565 Papaver somniferum HOM05D001812 ORTHO05D001874 3.5e-27 125.6 151 50.3
Sp7g24580 Schrenkiella parvula HOM05D001812 ORTHO05D001874 1.0e-26 124.0 155 49.7
TWI38G0291 Tripterygium wilfordii HOM05D001812 ORTHO05D001874 1.3e-26 123.6 147 51.0
Hma1.2p1_1516F.1_g288380 Hydrangea macrophylla HOM05D001812 ORTHO05D001874 2.2e-26 122.9 157 46.5
Migut.M01640 Erythranthe guttata HOM05D001812 ORTHO05D001874 3.8e-26 122.1 151 47.0
PSO210G7102 Papaver somniferum HOM05D001812 ORTHO05D001874 3.8e-26 122.1 151 49.0
Aa31LG5G11980 Aethionema arabicum HOM05D001812 ORTHO05D001874 1.5e-25 120.2 149 48.3
PGR031G2924 Punica granatum HOM05D001812 ORTHO05D001874 1.9e-25 119.8 148 46.6
Aqoxy1G04279 Aquilegia oxysepala HOM05D001812 ORTHO05D001874 7.2e-25 117.9 170 42.4
Gorai.002G101800 Gossypium raimondii HOM05D001812 ORTHO05D001874 1.2e-24 117.1 146 50.0
BcaNung02398 Brassica carinata HOM05D001812 ORTHO05D001874 4.7e-24 115.2 152 45.4
TAR517G0010 Trochodendron aralioides HOM05D001812 ORTHO05D001874 6.1e-24 114.8 121 52.9
SGA_v2.0_scaffold168G38569 Striga asiatica HOM05D001812 ORTHO05D001874 8.0e-24 114.4 146 45.9
EL10Ac4g07525 Beta vulgaris HOM05D001812 ORTHO05D001874 3.0e-23 112.5 146 45.2
Eucgr.F02038 Eucalyptus grandis HOM05D001812 ORTHO05D001874 1.2e-22 110.5 146 44.5
ECA240G1712 Erigeron canadensis HOM05D001812 ORTHO05D001874 4.4e-22 108.6 147 48.3
Hund23031 Selenicereus undatus HOM05D001812 ORTHO05D001874 5.7e-22 108.2 145 41.4
AT4G26620 Arabidopsis thaliana HOM05D001812 ORTHO05D001874 1.3e-21 107.1 164 42.1
AL7G26270 Arabidopsis lyrata HOM05D001812 ORTHO05D001874 1.7e-21 106.7 164 42.1
LjContig00272g0004277 Lotus japonicus HOM05D001812 ORTHO05D001874 2.2e-21 106.3 155 44.5
LjContig00272g0005348 Lotus japonicus HOM05D001812 ORTHO05D001874 2.2e-21 106.3 157 43.3
AUR62017146 Chenopodium quinoa HOM05D001812 ORTHO05D001874 3.1e-20 102.4 146 44.5
Sed0005604 Sechium edule HOM05D001812 ORTHO05D001874 3.1e-20 102.4 152 45.4
Carub.0007s1425 Capsella rubella HOM05D001812 ORTHO05D001874 7.0e-20 101.3 164 40.2
HanXRQChr03g0080341 Helianthus annuus HOM05D001812 ORTHO05D001874 9.1e-20 100.9 147 46.9
LjContig00081g0020581 Lotus japonicus HOM05D001812 ORTHO05D001874 1.6e-19 100.1 155 41.9
AUR62035661 Chenopodium quinoa HOM05D001812 ORTHO05D001874 2.7e-19 99.4 150 40.7
THA.LOC104811674 Tarenaya hassleriana HOM05D001812 ORTHO05D001874 3.5e-19 99.0 151 44.4
A01p17860 Brassica napus HOM05D001812 ORTHO05D001874 7.7e-19 97.8 165 41.2
BraA01t01742Z Brassica rapa HOM05D001812 ORTHO05D001874 7.7e-19 97.8 165 40.0
MELO3C024953.2 Cucumis melo HOM05D001812 ORTHO05D001874 7.7e-19 97.8 149 43.6
CsaV3_7G011510 Cucumis sativus L. HOM05D001812 ORTHO05D001874 7.7e-19 97.8 149 43.0
BcaC09g50634 Brassica carinata HOM05D001812 ORTHO05D001874 1.3e-18 97.1 164 41.5
VMungo0540G0218 Vigna mungo HOM05D001812 ORTHO05D001874 2.3e-18 96.3 144 42.4
ClCG09G021440 Citrullus lanatus HOM05D001812 ORTHO05D001874 3.8e-18 95.5 149 43.0
Glyma.02G301500 Glycine max HOM05D001812 ORTHO05D001874 5.0e-18 95.1 146 43.2
arahy.Tifrunner.gnm1.ann1.51KSCF Arachis hypogaea HOM05D001812 ORTHO05D001874 1.5e-17 93.6 146 37.7
C01p22660 Brassica napus HOM05D001812 ORTHO05D001874 1.5e-17 93.6 163 39.9
Ca_06403_v3 Cicer arietinum L. HOM05D001812 ORTHO05D001874 1.9e-17 93.2 155 42.6
CDE10G1281 Ceratophyllum demersum HOM05D001812 ORTHO05D001874 2.5e-17 92.8 145 39.3
VMungo0647G1240 Vigna mungo HOM05D001812 ORTHO05D001874 4.2e-17 92.0 160 40.0
Glyma.08G331100 Glycine max HOM05D001812 ORTHO05D001874 7.2e-17 91.3 146 41.8
CDE10G0553 Ceratophyllum demersum HOM05D001812 ORTHO05D001874 9.5e-17 90.9 145 40.0
TPR.G8581 Trifolium pratense HOM05D001812 ORTHO05D001874 2.1e-16 89.7 154 42.2
HPP92_018822 Vanilla planifolia HOM05D001812 ORTHO05D001874 2.1e-16 89.7 146 39.7
Ah.06g180980 Amaranthus hybridus HOM05D001812 ORTHO05D001874 2.8e-16 89.4 150 41.3
arahy.Tifrunner.gnm1.ann1.QRIG84 Arachis hypogaea HOM05D001812 ORTHO05D001874 3.6e-16 89.0 156 41.7
Lalb_Chr15g0082221 Lupinus albus HOM05D001812 ORTHO05D001874 4.7e-16 88.6 147 41.5
AL8G31460 Arabidopsis lyrata HOM05D001812 ORTHO05D001874 6.1e-16 88.2 150 43.3
Lsat_1_v5_gn_9_88880 Lactuca sativa HOM05D001812 ORTHO05D001874 6.1e-16 88.2 152 40.1
arahy.Tifrunner.gnm1.ann1.QNP3C2 Arachis hypogaea HOM05D001812 ORTHO05D001874 8.0e-16 87.8 146 37.0
CARHR269270 Cardamine hirsuta HOM05D001812 ORTHO05D001874 1.0e-15 87.4 152 39.5
Phvul.006G058900 Phaseolus vulgaris HOM05D001812 ORTHO05D001874 1.4e-15 87.0 144 40.3
Glyma.14G012700 Glycine max HOM05D001812 ORTHO05D001874 4.0e-15 85.5 165 38.8
ATR0751G131 Amborella trichopoda HOM05D001812 ORTHO05D001874 1.2e-14 84.0 155 38.1
AT5G55900 Arabidopsis thaliana HOM05D001812 ORTHO05D001874 1.5e-14 83.6 150 42.7
arahy.Tifrunner.gnm1.ann1.5Z2HMN Arachis hypogaea HOM05D001812 ORTHO05D001874 2.0e-14 83.2 153 39.9
Lalb_Chr17g0348981 Lupinus albus HOM05D001812 ORTHO05D001874 2.6e-14 82.8 155 40.6
Medtr5g096090 Medicago truncatula HOM05D001812 ORTHO05D001874 5.7e-14 81.6 155 40.6
SHI26480 Sapria himalayana HOM05D001812 ORTHO05D001874 5.7e-14 81.6 147 38.1
COL.COLO4_07720 Corchorus olitorius HOM05D001812 ORTHO05D001874 1.3e-13 80.5 109 44.0
Psat2g006840 Pisum sativum HOM05D001812 ORTHO05D001874 1.7e-13 80.1 157 42.7
Glyma.18G075500 Glycine max HOM05D001812 ORTHO05D001874 6.3e-13 78.2 146 37.7
Medtr3g007930 Medicago truncatula HOM05D001812 ORTHO05D001874 2.4e-12 76.3 155 39.4
Sp6g17750 Schrenkiella parvula HOM05D001812 ORTHO05D001874 2.4e-12 76.3 152 40.1
Phvul.008G280000 Phaseolus vulgaris HOM05D001812 ORTHO05D001874 5.4e-12 75.1 146 34.9
SEGI_04030 Sequoiadendron giganteum HOM05D001812 ORTHO05D001874 9.2e-12 74.3 156 31.4
Os02g0725100 Oryza sativa ssp. japonica HOM05D001812 ORTHO05D001874 1.0e-10 70.9 146 32.9
Zm00001eb189050 Zea mays HOM05D001812 ORTHO05D001874 1.3e-10 70.5 146 33.6
ATR0824G158 Amborella trichopoda HOM05D001812 ORTHO05D001874 2.9e-10 69.3 144 36.1
BcaC04g20190 Brassica carinata HOM05D001812 ORTHO05D001874 6.6e-10 68.2 147 36.1
C09p46850 Brassica napus HOM05D001812 ORTHO05D001874 6.6e-10 68.2 147 36.1
BolC9t57535H Brassica oleracea HOM05D001812 ORTHO05D001874 6.6e-10 68.2 147 36.1
QL08p003626 Quercus lobata HOM05D001812 ORTHO05D001874 6.6e-10 68.2 93 39.8
QL08p003645 Quercus lobata HOM05D001812 ORTHO05D001874 1.5e-09 67.0 93 39.8
BcaB08g35956 Brassica carinata HOM05D001812 ORTHO05D001874 7.3e-09 64.7 149 33.6
Sc07g0002280 Simmondsia chinensis HOM05D001812 ORTHO05D001874 1.6e-08 63.5 110 37.3
Thhalv10015242m.g Eutrema salsugineum HOM05D001812 ORTHO05D001874 6.1e-08 61.6 148 33.1
TAR629G2585 Trochodendron aralioides HOM05D001812 ORTHO05D001874 6.1e-08 61.6 144 30.6
A10p13090 Brassica napus HOM05D001812 ORTHO05D001874 1.8e-07 60.1 147 35.4
BraA10t43405Z Brassica rapa HOM05D001812 ORTHO05D001874 1.8e-07 60.1 147 35.4
Nn3g16712 Nelumbo nucifera HOM05D001812 ORTHO05D001874 4.4e-06 55.5 146 31.5


User provided reference genes

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