Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009422 Camellia sinensis var. sinensis HOM05D001736 ORTHO05D002344 2.8e-76 288.5 141 100.0
Actinidia17112 Actinidia chinensis HOM05D001736 ORTHO05D002344 3.3e-37 158.7 143 57.3
Dinv41252 Davidia involucrata HOM05D000126 ORTHO05D000085 4.6e-31 138.3 155 50.3
vmacro13122 Vaccinium macrocarpon HOM05D001736 ORTHO05D002344 3.0e-30 135.6 143 53.8
Rhsim01G0004900 Rhododendron simsii HOM05D001736 ORTHO05D002344 1.1e-29 133.7 144 51.4
Dinv42725 Davidia involucrata HOM05D001736 ORTHO05D002344 7.7e-26 120.9 126 49.2
Dinv43376 Davidia involucrata HOM05D001736 ORTHO05D002344 7.7e-26 120.9 126 49.2
Hma1.2p1_1710F.1_g298630 Hydrangea macrophylla HOM05D001736 ORTHO05D002344 2.2e-25 119.4 127 46.5
TAR625G0598 Trochodendron aralioides HOM05D001736 ORTHO05D002344 4.2e-24 115.2 144 44.4
TAR636G2366 Trochodendron aralioides HOM05D001736 ORTHO05D002344 5.5e-24 114.8 138 42.8
Hma1.2p1_3184F.1_g333750 Hydrangea macrophylla HOM05D001736 ORTHO05D002344 8.2e-20 100.9 103 45.6
Oeu004193.1 Olea europaea HOM05D001736 ORTHO05D002344 5.3e-19 98.2 137 37.2
Lj9A685T57 Lonicera japonica HOM05D001736 ORTHO05D002344 2.0e-18 96.3 133 38.3
Potri.006G168800 Populus trichocarpa HOM05D001736 ORTHO05D002344 1.9e-16 89.7 108 38.9
Potri.018G093400 Populus trichocarpa HOM05D001736 ORTHO05D002344 1.9e-16 89.7 143 33.6
Sabra06G0130200 Salix brachista HOM05D001736 ORTHO05D002344 5.5e-16 88.2 108 38.9
Sabra18G0080200 Salix brachista HOM05D001736 ORTHO05D002344 7.2e-16 87.8 134 35.1
Lj4g0002153 Lotus japonicus HOM05D001736 ORTHO05D002344 3.6e-15 85.5 143 31.5
PSO017G2561 Papaver somniferum HOM05D001736 ORTHO05D002344 3.6e-15 85.5 131 36.6
PSO170G0946 Papaver somniferum HOM05D001736 ORTHO05D002344 3.6e-15 85.5 126 38.9
Oeu042161.1 Olea europaea HOM05D001736 ORTHO05D002344 7.9e-15 84.3 137 37.2
Gohir.A08G023300 Gossypium hirsutum HOM05D001736 ORTHO05D002344 1.8e-14 83.2 122 41.8
PGR102G3005 Punica granatum HOM05D001736 ORTHO05D002344 1.8e-14 83.2 99 42.4
Thecc.09G172700 Theobroma cacao HOM05D001736 ORTHO05D002344 1.8e-14 83.2 99 44.4
Duzib168G0595 Durio zibethinus HOM05D001736 ORTHO05D002344 2.3e-14 82.8 99 44.4
Nn2g12715 Nelumbo nucifera HOM05D001736 ORTHO05D002344 3.0e-14 82.4 149 32.9
CiPaw.08G036600 Carya illinoinensis HOM05D001736 ORTHO05D002344 6.7e-14 81.3 143 33.6
Duzib170G0281 Durio zibethinus HOM05D001736 ORTHO05D002344 6.7e-14 81.3 110 40.0
MSTRG.26222 Avicennia marina HOM05D001736 ORTHO05D002344 1.5e-13 80.1 142 37.3
GSVIVG01029204001 Vitis vinifera HOM05D001736 ORTHO05D002344 1.5e-13 80.1 84 47.6
Psat0s509g0040 Pisum sativum HOM05D001736 ORTHO05D002344 2.0e-13 79.7 134 35.1
COL.COLO4_05881 Corchorus olitorius HOM05D001736 ORTHO05D002344 2.6e-13 79.3 103 41.7
Glyma.17G063600 Glycine max HOM05D001736 ORTHO05D002344 2.6e-13 79.3 164 33.5
Cc06_g13280 Coffea canephora HOM05D001736 ORTHO05D002344 3.3e-13 79.0 76 47.4
Manes.14G153000 Manihot esculenta HOM05D001736 ORTHO05D002344 3.3e-13 79.0 127 36.2
arahy.Tifrunner.gnm1.ann1.R8TPV6 Arachis hypogaea HOM05D001736 ORTHO05D002344 4.4e-13 78.6 140 37.1
MSTRG.10737 Avicennia marina HOM05D001736 ORTHO05D002344 4.4e-13 78.6 136 35.3
Glyma.20G083500 Glycine max HOM05D001736 ORTHO05D002344 4.4e-13 78.6 120 35.8
Gohir.D08G033800 Gossypium hirsutum HOM05D001736 ORTHO05D002344 4.4e-13 78.6 122 38.5
Gorai.004G031400 Gossypium raimondii HOM05D001736 ORTHO05D002344 4.4e-13 78.6 122 38.5
arahy.Tifrunner.gnm1.ann1.N76PQP Arachis hypogaea HOM05D001736 ORTHO05D002344 5.7e-13 78.2 139 37.4
CANSAT11G2423 Cannabis sativa HOM05D001736 ORTHO05D002344 1.7e-12 76.6 134 35.1
Medtr4g128220 Medicago truncatula HOM05D001736 ORTHO05D002344 2.2e-12 76.3 147 34.0
QL02p097655 Quercus lobata HOM05D001736 ORTHO05D002344 2.2e-12 76.3 136 34.6
Lalb_Chr12g0199371 Lupinus albus HOM05D001736 ORTHO05D002344 2.8e-12 75.9 131 33.6
SalBow6G5740 Salvia bowleyana HOM05D001736 ORTHO05D002344 2.8e-12 75.9 72 47.2
Ca_21172_v3 Cicer arietinum L. HOM05D001736 ORTHO05D002344 6.3e-12 74.7 134 31.3
Ca_21221_v3 Cicer arietinum L. HOM05D001736 ORTHO05D002344 6.3e-12 74.7 134 31.3
A08p19330 Brassica napus HOM05D001736 ORTHO05D002344 2.4e-11 72.8 70 51.4
CiPaw.07G192100 Carya illinoinensis HOM05D001736 ORTHO05D002344 3.1e-11 72.4 106 35.8
Gohir.A05G004500 Gossypium hirsutum HOM05D001736 ORTHO05D002344 4.1e-11 72.0 86 43.0
Gohir.D05G005400 Gossypium hirsutum HOM05D001736 ORTHO05D002344 4.1e-11 72.0 86 43.0
Gorai.009G005200 Gossypium raimondii HOM05D001736 ORTHO05D002344 4.1e-11 72.0 86 43.0
TWI34G1116 Tripterygium wilfordii HOM05D001736 ORTHO05D002344 4.1e-11 72.0 112 38.4
VMungo1215G2460 Vigna mungo HOM05D001736 ORTHO05D002344 4.1e-11 72.0 141 30.5
BraA08t33894Z Brassica rapa HOM05D001736 ORTHO05D002344 7.0e-11 71.2 78 46.2
TPR.G5412 Trifolium pratense HOM05D001736 ORTHO05D002344 7.0e-11 71.2 144 34.0
Aqoxy7G02324 Aquilegia oxysepala HOM05D001736 ORTHO05D002344 1.2e-10 70.5 105 34.3
DCAR_020123 Daucus carota HOM05D001736 ORTHO05D002344 2.0e-10 69.7 156 30.8
MD13G1255100 Malus domestica HOM05D001736 ORTHO05D002344 3.5e-10 68.9 128 33.6
Cpa.g.sc95.53 Carica papaya HOM05D001736 ORTHO05D002344 5.9e-10 68.2 146 32.9
Lalb_Chr07g0180451 Lupinus albus HOM05D001736 ORTHO05D002344 5.9e-10 68.2 124 36.3
Prupe.1G086200 Prunus persica HOM05D001736 ORTHO05D002344 7.7e-10 67.8 135 28.9
Ciclev10008878m.g Citrus clementina HOM05D001736 ORTHO05D002344 1.0e-09 67.4 94 36.2
MBI14_g17364_MAGBIO Magnolia biondii HOM05D001736 ORTHO05D002344 1.3e-09 67.0 129 33.3
Haze_22103 Corylus avellana HOM05D001736 ORTHO05D002344 1.7e-09 66.6 127 34.6
Lalb_Chr13g0300251 Lupinus albus HOM05D001736 ORTHO05D002344 1.7e-09 66.6 92 35.9
Phvul.003G146200 Phaseolus vulgaris HOM05D001736 ORTHO05D002344 2.2e-09 66.2 123 33.3
Atru.chr7.650 Acer truncatum HOM05D001736 ORTHO05D002344 3.8e-09 65.5 134 29.1
Eucgr.C02306 Eucalyptus grandis HOM05D001736 ORTHO05D002344 3.8e-09 65.5 95 35.8
RcHm_v2.0_Chr4g0402571 Rosa chinensis HOM05D001736 ORTHO05D002344 5.0e-09 65.1 120 31.7
Lsat_1_v5_gn_8_66841 Lactuca sativa HOM05D001736 ORTHO05D002344 8.5e-09 64.3 106 34.9
Cfa013510 Carpinus fangiana HOM05D001736 ORTHO05D002344 1.5e-08 63.5 137 30.7
Aa31LG8G15950 Aethionema arabicum HOM05D001736 ORTHO05D002344 4.2e-08 62.0 57 49.1
THA.LOC104803498 Tarenaya hassleriana HOM05D001736 ORTHO05D002344 5.5e-08 61.6 89 34.8
MSTRG.6211 Avicennia marina HOM05D001736 ORTHO05D002344 1.2e-07 60.5 141 31.2
C03p25050 Brassica napus HOM05D001736 ORTHO05D002344 1.2e-07 60.5 81 42.0
BolC3t14896H Brassica oleracea HOM05D001736 ORTHO05D002344 1.2e-07 60.5 81 42.0
BcaC01g01162 Brassica carinata HOM05D001736 ORTHO05D002344 1.6e-07 60.1 81 42.0
C03p88790 Brassica napus HOM05D001736 ORTHO05D002344 1.6e-07 60.1 81 42.0
BolC3t21190H Brassica oleracea HOM05D001736 ORTHO05D002344 1.6e-07 60.1 81 42.0
SalBow1G3656 Salvia bowleyana HOM05D001736 ORTHO05D002344 1.6e-07 60.1 101 33.7
BcaC01g05548 Brassica carinata HOM05D001736 ORTHO05D002344 2.1e-07 59.7 73 45.2
FvH4_4g08300 Fragaria vesca HOM05D001736 ORTHO05D002344 2.1e-07 59.7 135 28.9
FAN12G2304 Fragaria x ananassa HOM05D001736 ORTHO05D002344 2.1e-07 59.7 135 28.9
BcaB03g12639 Brassica carinata HOM05D001736 ORTHO05D002344 4.7e-07 58.5 63 47.6
CARHR238150 Cardamine hirsuta HOM05D001736 ORTHO05D002344 4.7e-07 58.5 67 43.3
BcaC06g36478 Brassica carinata HOM05D001736 ORTHO05D002344 6.1e-07 58.2 54 48.1
C07p03870 Brassica napus HOM05D001736 ORTHO05D002344 6.1e-07 58.2 54 48.1
Sp7g28120 Schrenkiella parvula HOM05D001736 ORTHO05D002344 8.0e-07 57.8 67 44.8
FAN17G2960 Fragaria x ananassa HOM05D001736 ORTHO05D002344 1.0e-06 57.4 120 30.0
Carub.0007s1037 Capsella rubella HOM05D001736 ORTHO05D002344 1.4e-06 57.0 59 47.5
BraA07t27979Z Brassica rapa HOM05D001736 ORTHO05D002344 1.8e-06 56.6 58 43.1
AT4G30240 Arabidopsis thaliana HOM05D001736 ORTHO05D002344 2.3e-06 56.2 77 37.7
FAN07G2300 Fragaria x ananassa HOM05D001736 ORTHO05D002344 2.3e-06 56.2 133 27.8
HanXRQChr05g0143041 Helianthus annuus HOM05D001736 ORTHO05D002344 2.3e-06 56.2 99 36.4
A07p01800 Brassica napus HOM05D001736 ORTHO05D002344 3.0e-06 55.8 54 44.4
MD16G1258200 Malus domestica HOM05D001736 ORTHO05D002344 3.0e-06 55.8 109 33.0
AL7G21910 Arabidopsis lyrata HOM05D001736 ORTHO05D002344 5.2e-06 55.1 67 41.8
Dinv00907 Davidia involucrata HOM05D001736 ORTHO05D002344 6.7e-06 54.7 74 37.8
BcaB03g16676 Brassica carinata HOM05D001736 ORTHO05D002344 8.8e-06 54.3 54 44.4
CARHR109430 Cardamine hirsuta HOM05D001736 ORTHO05D002344 8.8e-06 54.3 71 43.7


User provided reference genes

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