Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009403 Camellia sinensis var. sinensis HOM05D005091 ORTHO05D006047 8.8e-40 166.4 78 100.0
CSS0043881 Camellia sinensis var. sinensis HOM05D005091 ORTHO05D006047 3.1e-37 157.9 78 96.2
CSS0039319 Camellia sinensis var. sinensis HOM05D005091 ORTHO05D006047 1.2e-31 139.4 63 98.4
CSS0014539 Camellia sinensis var. sinensis HOM05D005091 ORTHO05D006047 1.7e-30 135.6 63 96.8
CSS0022719 Camellia sinensis var. sinensis HOM05D005091 ORTHO05D006047 1.7e-30 135.6 63 96.8
CSS0016397 Camellia sinensis var. sinensis HOM05D005091 ORTHO05D006047 2.2e-30 135.2 63 98.4
CSS0037916 Camellia sinensis var. sinensis HOM05D005091 ORTHO05D006047 2.8e-30 134.8 63 96.8
Dinv42028 Davidia involucrata HOM05D005091 ORTHO05D006047 6.3e-30 133.7 63 93.7
CSS0020327 Camellia sinensis var. sinensis HOM05D005091 ORTHO05D006047 1.8e-29 132.1 62 95.2
vmacro17453 Vaccinium macrocarpon HOM05D005091 ORTHO05D006047 3.1e-29 131.3 63 90.5
Oeu004806.3 Olea europaea HOM05D005091 ORTHO05D006047 2.0e-28 128.6 63 88.9
Oeu041611.2 Olea europaea HOM05D005091 ORTHO05D006047 2.0e-28 128.6 63 88.9
Cc02_g17150 Coffea canephora HOM05D005091 ORTHO05D006047 4.5e-28 127.5 63 88.9
Rhsim05G0070500 Rhododendron simsii HOM05D005091 ORTHO05D006047 4.5e-28 127.5 63 87.3
Nitab4.5_0009512g0060 Nicotiana tabacum HOM05D005091 ORTHO05D006047 5.9e-28 127.1 63 88.9
PGSC0003DMG400030963 Solanum tuberosum HOM05D005091 ORTHO05D006047 5.9e-28 127.1 63 88.9
Solyc01g110030.3 Solanum lycopersicum HOM05D005091 ORTHO05D006047 1.3e-27 125.9 63 87.3
Sopen01g052220 Solanum pennellii HOM05D005091 ORTHO05D006047 1.3e-27 125.9 63 87.3
Hma1.2p1_0066F.1_g036020 Hydrangea macrophylla HOM05D005091 ORTHO05D006047 2.2e-27 125.2 62 85.5
Lj5C193G6 Lonicera japonica HOM05D005091 ORTHO05D006047 2.2e-27 125.2 60 90.0
Nitab4.5_0005919g0020 Nicotiana tabacum HOM05D005091 ORTHO05D006047 2.9e-27 124.8 60 90.0
MSTRG.16832 Avicennia marina HOM05D005091 ORTHO05D006047 3.8e-27 124.4 63 85.7
Migut.B00202 Erythranthe guttata HOM05D005091 ORTHO05D006047 3.8e-27 124.4 63 85.7
Peaxi162Scf00016g00337 Petunia axillaris HOM05D005091 ORTHO05D006047 3.8e-27 124.4 63 85.7
SalBow6G4139 Salvia bowleyana HOM05D005091 ORTHO05D006047 5.0e-27 124.0 61 86.9
unitig_21.g20796 Utricularia gibba HOM05D005091 ORTHO05D006047 1.1e-26 122.9 59 86.4
DCAR_004295 Daucus carota HOM05D005091 ORTHO05D006047 5.5e-26 120.6 61 85.2
Prupe.8G089300 Prunus persica HOM05D005091 ORTHO05D006047 7.2e-26 120.2 63 81.0
MD05G1059400 Malus domestica HOM05D005091 ORTHO05D006047 1.2e-25 119.4 63 81.0
MD10G1067500 Malus domestica HOM05D005091 ORTHO05D006047 1.2e-25 119.4 63 81.0
ECA236G1753 Erigeron canadensis HOM05D005091 ORTHO05D006047 1.6e-25 119.0 61 82.0
HanXRQChr04g0127771 Helianthus annuus HOM05D005091 ORTHO05D006047 1.6e-25 119.0 61 82.0
Lsat_1_v5_gn_9_107760 Lactuca sativa HOM05D005091 ORTHO05D006047 1.6e-25 119.0 61 82.0
GSVIVG01024219001 Vitis vinifera HOM05D005091 ORTHO05D006047 1.6e-25 119.0 63 82.5
FAN15G1732 Fragaria x ananassa HOM05D005091 ORTHO05D006047 2.7e-25 118.2 63 79.4
FAN20G0404 Fragaria x ananassa HOM05D005091 ORTHO05D006047 2.7e-25 118.2 63 79.4
RcHm_v2.0_Chr6g0266641 Rosa chinensis HOM05D005091 ORTHO05D006047 2.7e-25 118.2 63 79.4
CiPaw.05G070800 Carya illinoinensis HOM05D005091 ORTHO05D006047 3.6e-25 117.9 63 79.4
ClCG11G004080 Citrullus lanatus HOM05D005091 ORTHO05D006047 3.6e-25 117.9 63 79.4
MELO3C023337.2 Cucumis melo HOM05D005091 ORTHO05D006047 3.6e-25 117.9 63 79.4
CsaV3_2G015120 Cucumis sativus L. HOM05D005091 ORTHO05D006047 3.6e-25 117.9 63 79.4
Lsat_1_v5_gn_7_91761 Lactuca sativa HOM05D005091 ORTHO05D006047 4.7e-25 117.5 61 80.3
Haze_02317 Corylus avellana HOM05D005091 ORTHO05D006047 1.0e-24 116.3 61 80.3
COL.COLO4_26004 Corchorus olitorius HOM05D005091 ORTHO05D006047 1.4e-24 115.9 63 79.4
Duzib132G0651 Durio zibethinus HOM05D005091 ORTHO05D006047 1.4e-24 115.9 63 79.4
Thecc.02G079100 Theobroma cacao HOM05D005091 ORTHO05D006047 1.4e-24 115.9 63 79.4
Aqoxy6G01233 Aquilegia oxysepala HOM05D005091 ORTHO05D006047 1.8e-24 115.5 63 79.4
Cpa.g.sc150.55 Carica papaya HOM05D005091 ORTHO05D006047 1.8e-24 115.5 63 77.8
Sed0016950 Sechium edule HOM05D005091 ORTHO05D006047 1.8e-24 115.5 60 78.3
HPP92_010256 Vanilla planifolia HOM05D005091 ORTHO05D006047 1.8e-24 115.5 61 80.3
HPP92_010449 Vanilla planifolia HOM05D005091 ORTHO05D006047 1.8e-24 115.5 61 80.3
Ah.01g019050 Amaranthus hybridus HOM05D005091 ORTHO05D006047 2.3e-24 115.2 63 81.0
ATR0665G578 Amborella trichopoda HOM05D005091 ORTHO05D006047 2.3e-24 115.2 62 80.6
Manes.12G155700 Manihot esculenta HOM05D005091 ORTHO05D006047 2.3e-24 115.2 60 81.7
Atru.chr5.3102 Acer truncatum HOM05D005091 ORTHO05D006047 3.0e-24 114.8 63 76.2
PSO541G2662 Papaver somniferum HOM05D005091 ORTHO05D006047 3.0e-24 114.8 61 80.3
PSO675G3543 Papaver somniferum HOM05D005091 ORTHO05D006047 3.0e-24 114.8 61 80.3
QL11p045411 Quercus lobata HOM05D005091 ORTHO05D006047 4.0e-24 114.4 61 78.7
MBI01_g12681_MAGBIO Magnolia biondii HOM05D005091 ORTHO05D006047 5.2e-24 114.0 63 77.8
PGR042G2402 Punica granatum HOM05D005091 ORTHO05D006047 5.2e-24 114.0 63 77.8
TAR381G0878 Trochodendron aralioides HOM05D005091 ORTHO05D006047 5.2e-24 114.0 60 83.3
Eucgr.G01705 Eucalyptus grandis HOM05D005091 ORTHO05D006047 6.8e-24 113.6 63 76.2
VMungo1127G0930 Vigna mungo HOM05D005091 ORTHO05D006047 6.8e-24 113.6 61 77.0
arahy.Tifrunner.gnm1.ann1.6QR9E7 Arachis hypogaea HOM05D005091 ORTHO05D006047 8.8e-24 113.2 61 77.0
arahy.Tifrunner.gnm1.ann1.PP2YAD Arachis hypogaea HOM05D005091 ORTHO05D006047 8.8e-24 113.2 61 77.0
TAR625G0679 Trochodendron aralioides HOM05D005091 ORTHO05D006047 8.8e-24 113.2 63 79.4
RcHm_v2.0_Chr6g0266811 Rosa chinensis HOM05D005091 ORTHO05D006047 1.5e-23 112.5 63 76.2
Zm00001eb151660 Zea mays HOM05D005091 ORTHO05D006047 2.0e-23 112.1 63 76.2
EL10Ac9g21684 Beta vulgaris HOM05D005091 ORTHO05D006047 2.6e-23 111.7 63 79.4
CANSAT11G2456 Cannabis sativa HOM05D005091 ORTHO05D006047 2.6e-23 111.7 63 74.6
CDE06G2285 Ceratophyllum demersum HOM05D005091 ORTHO05D006047 2.6e-23 111.7 60 78.3
Gohir.A04G124200 Gossypium hirsutum HOM05D005091 ORTHO05D006047 2.6e-23 111.7 61 77.0
TWI79G0003 Tripterygium wilfordii HOM05D005091 ORTHO05D006047 3.4e-23 111.3 60 78.3
AL3G52590 Arabidopsis lyrata HOM05D005091 ORTHO05D006047 4.4e-23 110.9 61 75.4
AT2G16405 Arabidopsis thaliana HOM05D005091 ORTHO05D006047 4.4e-23 110.9 61 75.4
BcaB03g16352 Brassica carinata HOM05D005091 ORTHO05D006047 4.4e-23 110.9 61 75.4
BcaC06g36149 Brassica carinata HOM05D005091 ORTHO05D006047 4.4e-23 110.9 61 75.4
A07p04510 Brassica napus HOM05D005091 ORTHO05D006047 4.4e-23 110.9 61 75.4
C07p07220 Brassica napus HOM05D005091 ORTHO05D006047 4.4e-23 110.9 61 75.4
BolC7t41142H Brassica oleracea HOM05D005091 ORTHO05D006047 4.4e-23 110.9 61 75.4
BraA07t28242Z Brassica rapa HOM05D005091 ORTHO05D006047 4.4e-23 110.9 61 75.4
CARHR106660 Cardamine hirsuta HOM05D005091 ORTHO05D006047 4.4e-23 110.9 61 75.4
Thhalv10022667m.g Eutrema salsugineum HOM05D005091 ORTHO05D006047 4.4e-23 110.9 61 75.4
Sp3g29690 Schrenkiella parvula HOM05D005091 ORTHO05D006047 4.4e-23 110.9 61 75.4
Gohir.D04G166300 Gossypium hirsutum HOM05D005091 ORTHO05D006047 7.5e-23 110.2 61 75.4
Gorai.012G154700 Gossypium raimondii HOM05D005091 ORTHO05D006047 7.5e-23 110.2 61 75.4
Lj3g0010610 Lotus japonicus HOM05D005091 ORTHO05D006047 7.5e-23 110.2 60 76.7
Os01g0776400 Oryza sativa ssp. japonica HOM05D005091 ORTHO05D006047 7.5e-23 110.2 59 79.7
Phvul.011G210700 Phaseolus vulgaris HOM05D005091 ORTHO05D006047 7.5e-23 110.2 61 75.4
SEGI_20344 Sequoiadendron giganteum HOM05D005091 ORTHO05D006047 7.5e-23 110.2 60 78.3
Ca_23899_v3 Cicer arietinum L. HOM05D005091 ORTHO05D006047 9.8e-23 109.8 61 73.8
Medtr8g037340 Medicago truncatula HOM05D005091 ORTHO05D006047 9.8e-23 109.8 61 73.8
Psat4g148720 Pisum sativum HOM05D005091 ORTHO05D006047 9.8e-23 109.8 61 73.8
Lalb_Chr03g0034131 Lupinus albus HOM05D005091 ORTHO05D006047 1.3e-22 109.4 61 75.4
Carub.0003s3018 Capsella rubella HOM05D005091 ORTHO05D006047 1.7e-22 109.0 60 75.0
Ciclev10028263m.g Citrus clementina HOM05D005091 ORTHO05D006047 1.7e-22 109.0 63 71.4
SalBow6G1040 Salvia bowleyana HOM05D005091 ORTHO05D006047 2.8e-22 108.2 61 80.3
Gohir.A01G004000 Gossypium hirsutum HOM05D005091 ORTHO05D006047 3.7e-22 107.8 63 71.4
Gohir.D01G004000 Gossypium hirsutum HOM05D005091 ORTHO05D006047 4.9e-22 107.5 61 72.1
Gorai.002G004900 Gossypium raimondii HOM05D005091 ORTHO05D006047 4.9e-22 107.5 61 72.1
Aa31LG8G13770 Aethionema arabicum HOM05D005091 ORTHO05D006047 6.3e-22 107.1 61 73.8
CiPaw.06G131700 Carya illinoinensis HOM05D005091 ORTHO05D006047 6.3e-22 107.1 63 71.4
Glyma.12G236400 Glycine max HOM05D005091 ORTHO05D006047 6.3e-22 107.1 61 72.1
SMO232G0022 Selaginella moellendorffii HOM05D005091 ORTHO05D006047 6.3e-22 107.1 61 73.8
Sabra04G0107000 Salix brachista HOM05D005091 ORTHO05D006047 8.3e-22 106.7 61 72.1
TPR.G1894 Trifolium pratense HOM05D005091 ORTHO05D006047 8.3e-22 106.7 61 72.1
Pp3c21_5350 Physcomitrium patens HOM05D005091 ORTHO05D006047 1.4e-21 105.9 60 73.3
Potri.004G160000 Populus trichocarpa HOM05D005091 ORTHO05D006047 2.4e-21 105.1 61 72.1
Glyma.13G201900 Glycine max HOM05D005091 ORTHO05D006047 3.1e-21 104.8 61 70.5
Potri.009G121100 Populus trichocarpa HOM05D005091 ORTHO05D006047 3.1e-21 104.8 61 72.1
THA.LOC104807298 Tarenaya hassleriana HOM05D005091 ORTHO05D006047 4.1e-21 104.4 59 72.9
Mapoly0099s0024 Marchantia polymorpha HOM05D005091 ORTHO05D006047 4.5e-20 100.9 60 68.3
AUR62016783 Chenopodium quinoa HOM05D005091 ORTHO05D006047 6.6e-19 97.1 54 79.6
Hund06247 Selenicereus undatus HOM05D005091 ORTHO05D006047 2.5e-18 95.1 54 75.9
CBR_g20107 Chara braunii HOM05D005091 ORTHO05D006047 1.7e-14 82.4 60 58.3
Nn5g29154 Nelumbo nucifera HOM05D005091 ORTHO05D006047 1.4e-13 79.3 39 84.6


User provided reference genes

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