Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009360 Camellia sinensis var. sinensis HOM05D005637 ORTHO05D006983 4.5e-62 241.1 125 100.0
CSS0048520 Camellia sinensis var. sinensis HOM05D005637 ORTHO05D006983 1.8e-31 139.4 124 65.3
Manes.14G080801 Manihot esculenta HOM05D005637 ORTHO05D006983 1.1e-20 103.6 67 77.6
Actinidia04874 Actinidia chinensis HOM05D005637 ORTHO05D006983 1.2e-19 100.1 67 77.6
SalBow5G0960 Salvia bowleyana HOM05D005637 ORTHO05D006983 1.4e-18 96.7 67 79.1
Dinv10648 Davidia involucrata HOM05D005637 ORTHO05D006983 2.3e-18 95.9 68 76.5
Haze_07302 Corylus avellana HOM05D005637 ORTHO05D006983 2.0e-17 92.8 68 73.5
arahy.Tifrunner.gnm1.ann1.DXDM30 Arachis hypogaea HOM05D005637 ORTHO05D006983 2.6e-17 92.4 68 77.9
CSS0030079 Camellia sinensis var. sinensis HOM05D005637 ORTHO05D006983 2.6e-17 92.4 68 73.5
vmacro17563 Vaccinium macrocarpon HOM05D005637 ORTHO05D006983 3.4e-17 92.0 67 73.1
Peaxi162Scf00106g00427 Petunia axillaris HOM05D005637 ORTHO05D006983 4.4e-17 91.7 72 66.7
Ah.02g113660 Amaranthus hybridus HOM05D005637 ORTHO05D006983 5.8e-17 91.3 69 72.5
Cc00_g08390 Coffea canephora HOM05D005637 ORTHO05D006983 5.8e-17 91.3 67 74.6
TAR496G0002 Trochodendron aralioides HOM05D005637 ORTHO05D006983 7.5e-17 90.9 68 72.1
TAR629G0341 Trochodendron aralioides HOM05D005637 ORTHO05D006983 7.5e-17 90.9 68 72.1
CSS0006784 Camellia sinensis var. sinensis HOM05D005637 ORTHO05D006983 9.8e-17 90.5 67 74.6
Migut.I00202 Erythranthe guttata HOM05D005637 ORTHO05D006983 1.7e-16 89.7 68 72.1
Hma1.2p1_0060F.1_g033550 Hydrangea macrophylla HOM05D005637 ORTHO05D006983 3.7e-16 88.6 68 72.1
Sc04g0002850 Simmondsia chinensis HOM05D005637 ORTHO05D006983 4.9e-16 88.2 68 73.5
TWI75G0754 Tripterygium wilfordii HOM05D005637 ORTHO05D006983 1.1e-15 87.0 68 69.1
ATR0564G491 Amborella trichopoda HOM05D005637 ORTHO05D006983 1.9e-15 86.3 67 73.1
CAN.G648.12 Capsicum annuum HOM05D005637 ORTHO05D006983 1.9e-15 86.3 68 66.2
Ciclev10022740m.g Citrus clementina HOM05D005637 ORTHO05D006983 1.9e-15 86.3 67 71.6
Hund02632 Selenicereus undatus HOM05D005637 ORTHO05D006983 2.4e-15 85.9 69 71.0
QL10p017509 Quercus lobata HOM05D005637 ORTHO05D006983 7.0e-15 84.3 68 69.1
Cpa.g.sc57.35 Carica papaya HOM05D005637 ORTHO05D006983 9.2e-15 84.0 67 70.1
CDE02G3019 Ceratophyllum demersum HOM05D005637 ORTHO05D006983 9.2e-15 84.0 73 65.8
BcaB03g11995 Brassica carinata HOM05D005637 ORTHO05D006983 1.6e-14 83.2 68 70.6
PGR119G0762 Punica granatum HOM05D005637 ORTHO05D006983 2.1e-14 82.8 67 70.1
EL10Ac5g11048 Beta vulgaris HOM05D005637 ORTHO05D006983 3.5e-14 82.0 68 66.2
Aa31LG7G8540 Aethionema arabicum HOM05D005637 ORTHO05D006983 4.6e-14 81.6 68 69.1
Aqoxy3G03463 Aquilegia oxysepala HOM05D005637 ORTHO05D006983 4.6e-14 81.6 67 65.7
CiPaw.11G046600 Carya illinoinensis HOM05D005637 ORTHO05D006983 6.0e-14 81.3 51 80.4
AUR62008440 Chenopodium quinoa HOM05D005637 ORTHO05D006983 6.0e-14 81.3 70 65.7
AUR62021650 Chenopodium quinoa HOM05D005637 ORTHO05D006983 6.0e-14 81.3 70 65.7
Eucgr.G02481 Eucalyptus grandis HOM05D005637 ORTHO05D006983 6.0e-14 81.3 67 65.7
A08p27370 Brassica napus HOM05D005637 ORTHO05D006983 3.0e-13 79.0 68 67.6
BraA08t34678Z Brassica rapa HOM05D005637 ORTHO05D006983 3.0e-13 79.0 68 67.6
CsaV3_5G025290 Cucumis sativus L. HOM05D005637 ORTHO05D006983 5.1e-13 78.2 72 65.3
Prupe.1G278400 Prunus persica HOM05D005637 ORTHO05D006983 5.1e-13 78.2 68 64.7
GSVIVG01007979001 Vitis vinifera HOM05D005637 ORTHO05D006983 5.1e-13 78.2 80 61.2
DCAR_026064 Daucus carota HOM05D005637 ORTHO05D006983 1.9e-12 76.3 68 64.7
PGSC0003DMG400021937 Solanum tuberosum HOM05D005637 ORTHO05D006983 1.9e-12 76.3 68 61.8
HPP92_011002 Vanilla planifolia HOM05D005637 ORTHO05D006983 5.6e-12 74.7 68 63.2
BcaB04g17310 Brassica carinata HOM05D005637 ORTHO05D006983 9.5e-12 73.9 68 64.7
AL1G39180 Arabidopsis lyrata HOM05D005637 ORTHO05D006983 1.2e-11 73.6 67 59.7
AT1G26550 Arabidopsis thaliana HOM05D005637 ORTHO05D006983 1.2e-11 73.6 67 59.7
Carub.0001s2449 Capsella rubella HOM05D005637 ORTHO05D006983 1.2e-11 73.6 67 59.7
Sp1g22230 Schrenkiella parvula HOM05D005637 ORTHO05D006983 1.2e-11 73.6 67 59.7
Lsat_1_v5_gn_1_14240 Lactuca sativa HOM05D005637 ORTHO05D006983 2.8e-11 72.4 67 61.2
C05p24490 Brassica napus HOM05D005637 ORTHO05D006983 3.6e-11 72.0 68 61.8
BolC5t31183H Brassica oleracea HOM05D005637 ORTHO05D006983 3.6e-11 72.0 68 61.8
CANSAT80G0999 Cannabis sativa HOM05D005637 ORTHO05D006983 3.6e-11 72.0 68 64.7
CANSAT80G1152 Cannabis sativa HOM05D005637 ORTHO05D006983 3.6e-11 72.0 68 64.7
BcaB03g12359 Brassica carinata HOM05D005637 ORTHO05D006983 6.2e-11 71.2 66 62.1
CARHR025420 Cardamine hirsuta HOM05D005637 ORTHO05D006983 1.4e-10 70.1 68 63.2
ECA247G3019 Erigeron canadensis HOM05D005637 ORTHO05D006983 2.3e-10 69.3 64 60.9
RcHm_v2.0_Chr4g0439331 Rosa chinensis HOM05D005637 ORTHO05D006983 2.3e-10 69.3 69 60.9
FvH4_4g30970 Fragaria vesca HOM05D005637 ORTHO05D006983 3.1e-10 68.9 72 58.3
FAN17G1506 Fragaria x ananassa HOM05D005637 ORTHO05D006983 3.1e-10 68.9 72 58.3
FAN22G0476 Fragaria x ananassa HOM05D005637 ORTHO05D006983 3.1e-10 68.9 72 58.3
FAN12G2219 Fragaria x ananassa HOM05D005637 ORTHO05D006983 4.0e-10 68.6 72 56.9
Manes.06G090201 Manihot esculenta HOM05D005637 ORTHO05D006983 4.0e-10 68.6 67 56.7
Os09g0411700 Oryza sativa ssp. japonica HOM05D005637 ORTHO05D006983 4.0e-10 68.6 73 57.5
Ah.02g113670 Amaranthus hybridus HOM05D005637 ORTHO05D006983 5.2e-10 68.2 101 46.5
Mapoly0082s0039 Marchantia polymorpha HOM05D005637 ORTHO05D006983 8.9e-10 67.4 68 55.9
Medtr3g037570 Medicago truncatula HOM05D005637 ORTHO05D006983 1.2e-09 67.0 68 61.8
Nn2g15887 Nelumbo nucifera HOM05D005637 ORTHO05D006983 1.2e-09 67.0 68 58.8
PSO832G2445 Papaver somniferum HOM05D005637 ORTHO05D006983 1.2e-09 67.0 72 54.2
Sopen12g016310 Solanum pennellii HOM05D005637 ORTHO05D006983 1.5e-09 66.6 68 55.9
Lalb_Chr08g0235561 Lupinus albus HOM05D005637 ORTHO05D006983 2.6e-09 65.9 68 61.8
Zm00001eb312430 Zea mays HOM05D005637 ORTHO05D006983 2.6e-09 65.9 75 54.7
Rhsim08G0152700 Rhododendron simsii HOM05D005637 ORTHO05D006983 4.4e-09 65.1 67 55.2
A09p39930 Brassica napus HOM05D005637 ORTHO05D006983 7.5e-09 64.3 68 57.4
BraA09t39492Z Brassica rapa HOM05D005637 ORTHO05D006983 7.5e-09 64.3 68 57.4
CSS0002747 Camellia sinensis var. sinensis HOM05D005637 ORTHO05D006983 7.5e-09 64.3 39 79.5
MD16G1068800 Malus domestica HOM05D005637 ORTHO05D006983 7.5e-09 64.3 62 59.7
Pp3c26_7640 Physcomitrium patens HOM05D005637 ORTHO05D006983 9.9e-09 63.9 68 55.9
Solyc12g036200.2 Solanum lycopersicum HOM05D005637 ORTHO05D006983 1.7e-08 63.2 72 52.8
arahy.Tifrunner.gnm1.ann1.KT0WW2 Arachis hypogaea HOM05D005637 ORTHO05D006983 2.2e-08 62.8 67 55.2
arahy.Tifrunner.gnm1.ann1.M53U4W Arachis hypogaea HOM05D005637 ORTHO05D006983 2.2e-08 62.8 67 55.2
Gohir.A07G064200 Gossypium hirsutum HOM05D005637 ORTHO05D006983 2.9e-08 62.4 32 87.5
MBI04_g11434_MAGBIO Magnolia biondii HOM05D005637 ORTHO05D006983 2.9e-08 62.4 54 63.0
MD00G1081600 Malus domestica HOM05D005637 ORTHO05D006983 2.9e-08 62.4 34 82.4
SGA_v2.0_scaffold313G48341 Striga asiatica HOM05D005637 ORTHO05D006983 2.9e-08 62.4 67 55.2
TPR.G11903 Trifolium pratense HOM05D005637 ORTHO05D006983 2.9e-08 62.4 34 82.4
Psat5g200400 Pisum sativum HOM05D005637 ORTHO05D006983 4.9e-08 61.6 68 55.9
arahy.Tifrunner.gnm1.ann1.38D1EG Arachis hypogaea HOM05D005637 ORTHO05D006983 6.4e-08 61.2 55 63.6
ClCG09G021890 Citrullus lanatus HOM05D005637 ORTHO05D006983 6.4e-08 61.2 72 55.6
COL.COLO4_36923 Corchorus olitorius HOM05D005637 ORTHO05D006983 1.1e-07 60.5 29 93.1
Ca_14657_v3 Cicer arietinum L. HOM05D005637 ORTHO05D006983 1.4e-07 60.1 68 55.9
Thhalv10009046m.g Eutrema salsugineum HOM05D005637 ORTHO05D006983 2.4e-07 59.3 68 54.4
FAN07G0507 Fragaria x ananassa HOM05D005637 ORTHO05D006983 2.4e-07 59.3 31 83.9
Nitab4.5_0001997g0100 Nicotiana tabacum HOM05D005637 ORTHO05D006983 2.4e-07 59.3 31 83.9
Gohir.D07G069000 Gossypium hirsutum HOM05D005637 ORTHO05D006983 3.2e-07 58.9 28 92.9
Gorai.001G072500 Gossypium raimondii HOM05D005637 ORTHO05D006983 3.2e-07 58.9 28 92.9
unitig_748.g7812 Utricularia gibba HOM05D005637 ORTHO05D006983 3.2e-07 58.9 73 47.9
THA.LOC104822041 Tarenaya hassleriana HOM05D005637 ORTHO05D006983 4.1e-07 58.5 28 89.3
Oeu052447.1 Olea europaea HOM05D005637 ORTHO05D006983 5.4e-07 58.2 67 53.7
AagrBONN_evm.TU.Sc2ySwM_228.632 Anthoceros agrestis HOM05D005637 ORTHO05D006983 7.1e-07 57.8 68 50.0
Glyma.04G166700 Glycine max HOM05D005637 ORTHO05D006983 7.1e-07 57.8 68 54.4
Glyma.06G195800 Glycine max HOM05D005637 ORTHO05D006983 7.1e-07 57.8 68 54.4
VMungo1309G0753 Vigna mungo HOM05D005637 ORTHO05D006983 7.1e-07 57.8 68 54.4
Phvul.009G185800 Phaseolus vulgaris HOM05D005637 ORTHO05D006983 9.2e-07 57.4 71 54.9
MELO3C002951.2 Cucumis melo HOM05D005637 ORTHO05D006983 1.2e-06 57.0 72 52.8
BcaC06g35140 Brassica carinata HOM05D005637 ORTHO05D006983 2.1e-06 56.2 60 58.3
AagrBONN_evm.TU.Sc2ySwM_362.586 Anthoceros agrestis HOM05D005637 ORTHO05D006983 2.7e-06 55.8 67 49.3
Thecc.03G093000 Theobroma cacao HOM05D005637 ORTHO05D006983 2.7e-06 55.8 67 53.7
SMO367G1093 Selaginella moellendorffii HOM05D005637 ORTHO05D006983 3.5e-06 55.5 71 50.7
BcaC03g15376 Brassica carinata HOM05D005637 ORTHO05D006983 4.6e-06 55.1 73 47.9
CBR_g30502 Chara braunii HOM05D005637 ORTHO05D006983 6.0e-06 54.7 32 78.1
Duzib068G0698 Durio zibethinus HOM05D005637 ORTHO05D006983 6.0e-06 54.7 67 52.2
Duzib205G1800 Durio zibethinus HOM05D005637 ORTHO05D006983 6.0e-06 54.7 67 52.2
Sabra08G0067300 Salix brachista HOM05D005637 ORTHO05D006983 6.0e-06 54.7 68 50.0
LjContig00102g0010410 Lotus japonicus HOM05D005637 ORTHO05D006983 7.8e-06 54.3 68 54.4
Potri.008G089900 Populus trichocarpa HOM05D005637 ORTHO05D006983 7.8e-06 54.3 70 48.6


User provided reference genes

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