Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009347 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 0.0e+00 1890.5 1011 100.0
CSS0048439 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 0.0e+00 1882.8 1011 99.6
TAR628G1511 Trochodendron aralioides HOM05D005068 ORTHO05D007561 0.0e+00 1262.7 1013 71.1
Manes.09G018800 Manihot esculenta HOM05D005068 ORTHO05D007561 0.0e+00 1238.4 1051 67.6
CiPaw.01G213900 Carya illinoinensis HOM05D005068 ORTHO05D007561 0.0e+00 1230.7 1053 67.7
GSVIVG01016696001 Vitis vinifera HOM05D005068 ORTHO05D007561 0.0e+00 1226.1 1027 68.2
QL05p001958 Quercus lobata HOM05D005068 ORTHO05D007561 0.0e+00 1205.3 1064 65.8
Rhsim08G0242500 Rhododendron simsii HOM05D005068 ORTHO05D007561 0.0e+00 1193.3 1021 69.3
Sed0003275 Sechium edule HOM05D005068 ORTHO05D007561 0.0e+00 1168.7 1021 65.9
Cfa003490 Carpinus fangiana HOM05D005068 ORTHO05D007561 0.0e+00 1168.3 1060 64.3
Sed0017975 Sechium edule HOM05D005068 ORTHO05D007561 0.0e+00 1162.9 1021 65.6
MD17G1151100 Malus domestica HOM05D005068 ORTHO05D007561 0.0e+00 1162.5 1046 64.9
Potri.001G164100 Populus trichocarpa HOM05D005068 ORTHO05D007561 0.0e+00 1148.7 1053 63.9
Phvul.010G125200 Phaseolus vulgaris HOM05D005068 ORTHO05D007561 0.0e+00 1148.3 1032 64.5
Glyma.07G043700 Glycine max HOM05D005068 ORTHO05D007561 0.0e+00 1146.7 1034 64.7
VMungo0331G1431 Vigna mungo HOM05D005068 ORTHO05D007561 0.0e+00 1140.9 1023 64.5
MD09G1175700 Malus domestica HOM05D005068 ORTHO05D007561 0.0e+00 1140.6 1056 62.8
TWI59G1220 Tripterygium wilfordii HOM05D005068 ORTHO05D007561 0.0e+00 1135.9 1077 62.3
Aqoxy1G00349 Aquilegia oxysepala HOM05D005068 ORTHO05D007561 0.0e+00 1133.6 1006 64.7
PSO384G5027 Papaver somniferum HOM05D005068 ORTHO05D007561 0.0e+00 1133.6 1082 63.1
CsaV3_7G034120 Cucumis sativus L. HOM05D005068 ORTHO05D007561 0.0e+00 1131.7 1029 64.3
Atru.chr1.4129 Acer truncatum HOM05D005068 ORTHO05D007561 0.0e+00 1130.5 1053 64.4
Gorai.011G056800 Gossypium raimondii HOM05D005068 ORTHO05D007561 0.0e+00 1125.9 1031 64.5
Prupe.3G034700 Prunus persica HOM05D005068 ORTHO05D007561 0.0e+00 1125.2 1021 64.8
Ciclev10024779m.g Citrus clementina HOM05D005068 ORTHO05D007561 0.0e+00 1124.8 1056 62.9
Gohir.D10G053200 Gossypium hirsutum HOM05D005068 ORTHO05D007561 0.0e+00 1124.4 1031 64.4
Hund18654 Selenicereus undatus HOM05D005068 ORTHO05D007561 0.0e+00 1123.6 1055 62.8
Haze_16103 Corylus avellana HOM05D005068 ORTHO05D007561 0.0e+00 1118.2 1193 57.4
Lsat_1_v5_gn_5_136720 Lactuca sativa HOM05D005068 ORTHO05D007561 0.0e+00 1117.8 1017 64.4
Lalb_Chr04g0253821 Lupinus albus HOM05D005068 ORTHO05D007561 0.0e+00 1117.4 976 65.5
arahy.Tifrunner.gnm1.ann1.JS5XG8 Arachis hypogaea HOM05D005068 ORTHO05D007561 0.0e+00 1116.3 1048 62.9
Actinidia21819 Actinidia chinensis HOM05D005068 ORTHO05D007561 0.0e+00 1114.4 878 72.7
ECA234G0903 Erigeron canadensis HOM05D005068 ORTHO05D007561 0.0e+00 1114.4 990 65.1
MELO3C024322.2 Cucumis melo HOM05D005068 ORTHO05D007561 0.0e+00 1110.9 1021 64.3
HanXRQChr12g0360151 Helianthus annuus HOM05D005068 ORTHO05D007561 0.0e+00 1110.9 984 65.0
CAN.G790.67 Capsicum annuum HOM05D005068 ORTHO05D007561 0.0e+00 1109.7 1014 63.1
RcHm_v2.0_Chr2g0147011 Rosa chinensis HOM05D005068 ORTHO05D007561 0.0e+00 1109.7 1021 63.9
CANSAT01G1537 Cannabis sativa HOM05D005068 ORTHO05D007561 0.0e+00 1109.4 1029 64.5
Cc04_g00890 Coffea canephora HOM05D005068 ORTHO05D007561 0.0e+00 1108.2 1039 63.2
PGR102G2847 Punica granatum HOM05D005068 ORTHO05D007561 0.0e+00 1107.4 1010 63.8
Oeu000383.1 Olea europaea HOM05D005068 ORTHO05D007561 0.0e+00 1104.0 1027 63.0
PSO339G5314 Papaver somniferum HOM05D005068 ORTHO05D007561 0.0e+00 1100.1 1078 61.7
Solyc03g123530.4 Solanum lycopersicum HOM05D005068 ORTHO05D007561 0.0e+00 1099.3 1028 62.5
FAN14G5424 Fragaria x ananassa HOM05D005068 ORTHO05D007561 0.0e+00 1095.5 1017 63.3
Sabra01G0128700 Salix brachista HOM05D005068 ORTHO05D007561 0.0e+00 1095.1 1038 62.6
Lj3g0023295 Lotus japonicus HOM05D005068 ORTHO05D007561 0.0e+00 1094.7 1038 62.0
Psat2g016360 Pisum sativum HOM05D005068 ORTHO05D007561 0.0e+00 1094.0 1046 61.6
DCAR_026429 Daucus carota HOM05D005068 ORTHO05D007561 0.0e+00 1090.9 1034 62.6
Nitab4.5_0003981g0040 Nicotiana tabacum HOM05D005068 ORTHO05D007561 0.0e+00 1090.5 1042 61.3
Cpa.g.sc25.173 Carica papaya HOM05D005068 ORTHO05D007561 0.0e+00 1086.6 1084 59.5
FAN05G3041 Fragaria x ananassa HOM05D005068 ORTHO05D007561 0.0e+00 1086.6 1015 63.1
FvH4_6g35460 Fragaria vesca HOM05D005068 ORTHO05D007561 0.0e+00 1086.2 1015 63.0
Peaxi162Scf00038g02247 Petunia axillaris HOM05D005068 ORTHO05D007561 0.0e+00 1085.1 1038 61.9
MSTRG.22527 Avicennia marina HOM05D005068 ORTHO05D007561 0.0e+00 1082.8 1029 62.4
Medtr4g119670 Medicago truncatula HOM05D005068 ORTHO05D007561 0.0e+00 1082.0 1023 62.4
SalBow6G5915 Salvia bowleyana HOM05D005068 ORTHO05D007561 0.0e+00 1077.4 1041 62.2
Medtr5g019130 Medicago truncatula HOM05D005068 ORTHO05D007561 6.9e-312 1073.9 1051 61.0
Gohir.A10G051500 Gossypium hirsutum HOM05D005068 ORTHO05D007561 1.4e-311 1073.2 1027 62.0
EL10Ac7g16459 Beta vulgaris HOM05D005068 ORTHO05D007561 4.8e-311 1071.2 1080 58.8
TPR.G16658 Trifolium pratense HOM05D005068 ORTHO05D007561 2.0e-309 1065.8 1065 60.4
Nitab4.5_0009947g0020 Nicotiana tabacum HOM05D005068 ORTHO05D007561 9.9e-309 1063.5 909 66.1
Peaxi162Scf00535g00325 Petunia axillaris HOM05D005068 ORTHO05D007561 4.9e-308 1061.2 1023 62.1
vmacro15071 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 7.8e-306 1053.9 858 69.6
Glyma.16G012100 Glycine max HOM05D005068 ORTHO05D007561 1.7e-305 1052.7 1031 61.4
Lj5A31T61 Lonicera japonica HOM05D005068 ORTHO05D007561 2.3e-305 1052.4 863 68.9
Thecc.06G127400 Theobroma cacao HOM05D005068 ORTHO05D007561 1.5e-304 1049.7 1050 60.5
AUR62009935 Chenopodium quinoa HOM05D005068 ORTHO05D007561 3.6e-303 1045.0 1038 58.3
Nn8g38536 Nelumbo nucifera HOM05D005068 ORTHO05D007561 3.6e-303 1045.0 1019 60.9
Ca_23422_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 8.1e-303 1043.9 1042 60.3
AUR62001432 Chenopodium quinoa HOM05D005068 ORTHO05D007561 1.8e-302 1042.7 1034 58.8
Sopen03g041300 Solanum pennellii HOM05D005068 ORTHO05D007561 8.9e-302 1040.4 1047 59.0
Eucgr.J02606 Eucalyptus grandis HOM05D005068 ORTHO05D007561 9.9e-301 1036.9 1071 59.0
THA.LOC104808063 Tarenaya hassleriana HOM05D005068 ORTHO05D007561 1.4e-299 1033.1 1061 60.4
ClCG09G001250 Citrullus lanatus HOM05D005068 ORTHO05D007561 4.3e-296 1021.5 1025 60.5
FAN09G4827 Fragaria x ananassa HOM05D005068 ORTHO05D007561 7.3e-296 1020.8 1021 60.6
arahy.Tifrunner.gnm1.ann1.X03KN2 Arachis hypogaea HOM05D005068 ORTHO05D007561 2.1e-295 1019.2 1038 59.1
AT1G72440 Arabidopsis thaliana HOM05D005068 ORTHO05D007561 4.2e-291 1005.0 1022 59.2
AL2G32110 Arabidopsis lyrata HOM05D005068 ORTHO05D007561 2.5e-288 995.7 1022 58.6
Sp5g27520 Schrenkiella parvula HOM05D005068 ORTHO05D007561 4.3e-288 995.0 1045 58.3
Ca_30848_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 7.9e-282 974.2 872 62.7
C06p46800 Brassica napus HOM05D005068 ORTHO05D007561 4.8e-279 964.9 1022 58.1
BolC6t39723H Brassica oleracea HOM05D005068 ORTHO05D007561 1.4e-278 963.4 1031 57.7
Carub.0002s1929 Capsella rubella HOM05D005068 ORTHO05D007561 1.4e-278 963.4 910 62.6
Thhalv10018056m.g Eutrema salsugineum HOM05D005068 ORTHO05D007561 1.4e-278 963.4 1041 57.2
unitig_26.g8921 Utricularia gibba HOM05D005068 ORTHO05D007561 3.4e-277 958.7 1036 56.8
BcaC08g46695 Brassica carinata HOM05D005068 ORTHO05D007561 4.2e-275 951.8 1021 57.4
HPP92_014041 Vanilla planifolia HOM05D005068 ORTHO05D007561 6.0e-274 948.0 1053 54.7
CARHR065370 Cardamine hirsuta HOM05D005068 ORTHO05D007561 4.3e-272 941.8 1041 56.3
BcaB03g14995 Brassica carinata HOM05D005068 ORTHO05D007561 2.8e-271 939.1 1022 57.0
CDE05G0629 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 5.9e-269 931.4 1019 55.8
MBI13_g01677_MAGBIO Magnolia biondii HOM05D005068 ORTHO05D007561 6.5e-268 927.9 871 61.3
BraA07t31420Z Brassica rapa HOM05D005068 ORTHO05D007561 6.1e-266 921.4 1026 56.0
Aa31LG4G2770 Aethionema arabicum HOM05D005068 ORTHO05D007561 8.7e-265 917.5 949 57.7
ATR0317G028 Amborella trichopoda HOM05D005068 ORTHO05D007561 2.5e-259 899.4 1072 53.6
SGA_v2.0_scaffold71G23904 Striga asiatica HOM05D005068 ORTHO05D007561 1.6e-258 896.7 1026 55.4
Os09g0116400 Oryza sativa ssp. japonica HOM05D005068 ORTHO05D007561 3.9e-257 892.1 1018 52.8
vmacro14086 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 5.1e-257 891.7 620 76.3
Nitab4.5_0007072g0030 Nicotiana tabacum HOM05D005068 ORTHO05D007561 3.3e-256 889.0 830 62.7
TAR383G0209 Trochodendron aralioides HOM05D005068 ORTHO05D007561 7.2e-251 871.3 695 71.5
Zm00001eb008900 Zea mays HOM05D005068 ORTHO05D007561 2.6e-245 852.8 1041 50.1
SEGI_35987 Sequoiadendron giganteum HOM05D005068 ORTHO05D007561 1.4e-241 840.5 1063 50.1
Migut.I01119 Erythranthe guttata HOM05D005068 ORTHO05D007561 8.8e-225 784.6 1008 51.5
COL.COLO4_30833 Corchorus olitorius HOM05D005068 ORTHO05D007561 8.6e-212 741.5 588 69.2
SHI38508 Sapria himalayana HOM05D005068 ORTHO05D007561 1.1e-201 708.0 998 46.4
FAN02G4153 Fragaria x ananassa HOM05D005068 ORTHO05D007561 1.3e-199 701.0 599 65.1
Dinv37834 Davidia involucrata HOM05D005068 ORTHO05D007561 4.1e-198 696.0 494 79.1
AagrBONN_evm.TU.Sc2ySwM_228.3616 Anthoceros agrestis HOM05D005068 ORTHO05D007561 3.4e-192 676.4 922 44.1
Pp3c8_7540 Physcomitrium patens HOM05D005068 ORTHO05D007561 6.0e-189 665.6 1154 39.3
ECA234G3781 Erigeron canadensis HOM05D005068 ORTHO05D007561 4.8e-178 629.4 884 46.6
Mapoly0001s0039 Marchantia polymorpha HOM05D005068 ORTHO05D007561 1.4e-177 627.9 1044 41.4
A07p38620 Brassica napus HOM05D005068 ORTHO05D007561 7.1e-174 615.5 558 63.6
PGSC0003DMG400009145 Solanum tuberosum HOM05D005068 ORTHO05D007561 2.4e-169 600.5 598 60.4
Sc12g0010810 Simmondsia chinensis HOM05D005068 ORTHO05D007561 3.1e-169 600.1 730 51.8
CDE11G1047 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 2.3e-156 557.4 644 52.8
Dinv37835 Davidia involucrata HOM05D005068 ORTHO05D007561 2.9e-151 540.4 475 68.4
CBR_g4353 Chara braunii HOM05D005068 ORTHO05D007561 5.0e-151 539.7 1128 35.9
SMO356G0436 Selaginella moellendorffii HOM05D005068 ORTHO05D007561 2.0e-131 474.6 915 36.9
Cre10.g459600 Chlamydomonas reinhardtii HOM05D005068 ORTHO05D007561 8.3e-106 389.4 1096 33.1
CDE11G0362 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 1.3e-98 365.5 358 57.5
TAR383G0400 Trochodendron aralioides HOM05D005068 ORTHO05D007561 1.1e-94 352.4 291 68.7
Haze_25369 Corylus avellana HOM05D005068 ORTHO05D007561 1.2e-83 315.8 618 39.5
SHI25215 Sapria himalayana HOM05D005068 ORTHO05D007561 3.6e-77 294.3 580 39.1
PRCOL_00007240 Prasinoderma coloniale HOM05D005068 ORTHO05D007561 4.1e-73 280.8 843 31.1
Cc00_g06320 Coffea canephora HOM05D005068 ORTHO05D007561 9.0e-68 263.1 203 73.4
vmacro14085 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 2.2e-66 258.5 227 69.2
Cfa026526 Carpinus fangiana HOM05D005068 ORTHO05D007561 1.1e-62 246.1 952 27.4
MSTRG.13912 Avicennia marina HOM05D005068 ORTHO05D019833 1.3e-58 232.6 253 61.3
Psat7g194920 Pisum sativum HOM05D005068 ORTHO05D030493 3.9e-55 221.1 231 58.9
FAN23G2170 Fragaria x ananassa HOM05D005068 ORTHO05D007561 1.9e-54 218.8 180 67.2
Lj5C31T11 Lonicera japonica HOM05D005068 ORTHO05D019833 1.6e-48 199.1 226 65.0
Hund18058 Selenicereus undatus HOM05D005068 ORTHO05D030493 5.7e-38 164.1 174 55.7
vmacro15070 Vaccinium macrocarpon HOM05D005068 ORTHO05D019833 2.2e-37 162.2 212 57.5
Psat7g194960 Pisum sativum HOM05D005068 ORTHO05D030493 6.1e-32 144.1 151 56.3
HanXRQChr04g0122031 Helianthus annuus HOM05D005068 ORTHO05D007561 1.7e-29 136.0 132 59.1
Psat4g066440 Pisum sativum HOM05D005068 ORTHO05D030493 1.4e-28 132.9 118 62.7
Sc16g0005210 Simmondsia chinensis HOM05D005068 ORTHO05D019833 2.6e-27 128.6 215 48.4
Zm00001eb239840 Zea mays HOM05D001561 ORTHO05D001715 1.8e-20 105.9 134 45.5
Sc16g0005100 Simmondsia chinensis HOM05D005068 ORTHO05D014954 6.5e-18 97.4 57 77.2
ECA233G2064 Erigeron canadensis HOM05D005068 ORTHO05D007561 1.1e-17 96.7 81 63.0
COL.COLO4_30832 Corchorus olitorius HOM05D005068 ORTHO05D014954 1.9e-17 95.9 51 86.3
Sc16g0005200 Simmondsia chinensis HOM05D005068 ORTHO05D019833 1.8e-12 79.3 140 42.1
vmacro14087 Vaccinium macrocarpon HOM05D005068 ORTHO05D019833 6.5e-10 70.9 211 36.0
C04p42190 Brassica napus HOM05D014151 ORTHO05D014954 1.0e-07 63.5 39 71.8
C09p50490 Brassica napus HOM05D014151 ORTHO05D014954 1.0e-07 63.5 39 71.8
Sc16g0005110 Simmondsia chinensis HOM05D060119 ORTHO05D019833 1.4e-07 63.2 108 44.4
Aqoxy1G00348 Aquilegia oxysepala HOM05D005068 ORTHO05D078765 3.0e-07 62.0 82 52.4
BcaC09g47952 Brassica carinata HOM05D014151 ORTHO05D014954 4.0e-07 61.6 45 57.8
C03p21460 Brassica napus HOM05D014151 ORTHO05D014954 4.0e-07 61.6 39 69.2
BolC3t14532H Brassica oleracea HOM05D014151 ORTHO05D014954 4.0e-07 61.6 39 69.2
Psat7g258920 Pisum sativum HOM05D002153 ORTHO05D002137 5.7e-06 57.8 50 56.0
Psat1g211080 Pisum sativum HOM05D000001 ORTHO05D322910 9.7e-06 57.0 48 58.3


User provided reference genes

Program Settings