Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009332 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 1.3e-230 802.7 431 100.0
CSS0000155 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 2.9e-217 758.4 414 98.3
Actinidia20170 Actinidia chinensis HOM05D005133 ORTHO05D006685 1.5e-176 623.2 405 82.2
Rhsim07G0009300 Rhododendron simsii HOM05D005133 ORTHO05D006685 9.1e-171 604.0 431 76.8
Dinv43872 Davidia involucrata HOM05D005133 ORTHO05D006685 2.8e-164 582.4 421 77.0
CSS0040148 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 4.2e-160 568.5 427 74.0
Dinv32531 Davidia involucrata HOM05D005133 ORTHO05D006685 7.8e-154 547.7 424 73.1
GSVIVG01027010001 Vitis vinifera HOM05D005133 ORTHO05D006685 7.8e-146 521.2 408 71.6
TAR375G0148 Trochodendron aralioides HOM05D005133 ORTHO05D006685 5.0e-145 518.5 421 69.1
Cfa007878 Carpinus fangiana HOM05D005133 ORTHO05D006685 8.0e-143 511.1 421 67.9
Atru.chr5.593 Acer truncatum HOM05D005133 ORTHO05D006685 8.9e-142 507.7 414 67.9
Gohir.D07G145800 Gossypium hirsutum HOM05D005133 ORTHO05D006685 8.9e-142 507.7 414 69.1
Gorai.001G158000 Gossypium raimondii HOM05D005133 ORTHO05D006685 8.9e-142 507.7 414 69.1
Lj7C506T5 Lonicera japonica HOM05D005133 ORTHO05D006685 1.2e-141 507.3 424 67.2
Thecc.01G351000 Theobroma cacao HOM05D005133 ORTHO05D006685 2.6e-141 506.1 409 69.9
Haze_14198 Corylus avellana HOM05D005133 ORTHO05D006685 3.7e-140 502.3 407 68.1
CiPaw.02G036200 Carya illinoinensis HOM05D005133 ORTHO05D006685 8.3e-140 501.1 414 68.8
vmacro20884 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 4.1e-139 498.8 515 58.1
Duzib133G0222 Durio zibethinus HOM05D005133 ORTHO05D006685 2.1e-138 496.5 413 68.5
Cpa.g.sc11.53 Carica papaya HOM05D005133 ORTHO05D006685 3.0e-137 492.7 420 66.0
Potri.014G091400 Populus trichocarpa HOM05D005133 ORTHO05D006685 1.1e-136 490.7 415 66.3
Peaxi162Scf00020g01713 Petunia axillaris HOM05D005133 ORTHO05D006685 3.6e-135 485.7 425 65.2
Manes.01G251600 Manihot esculenta HOM05D005133 ORTHO05D006685 6.2e-135 485.0 412 66.3
Prupe.2G179100 Prunus persica HOM05D005133 ORTHO05D006685 1.3e-132 477.2 414 64.5
QL07p038619 Quercus lobata HOM05D005133 ORTHO05D006685 1.3e-132 477.2 413 65.9
DCAR_025229 Daucus carota HOM05D005133 ORTHO05D006685 6.4e-132 474.9 402 66.2
Ciclev10020434m.g Citrus clementina HOM05D005133 ORTHO05D006685 8.3e-132 474.6 414 63.8
Nitab4.5_0003501g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 4.1e-131 472.2 408 65.7
SalBow3G2243 Salvia bowleyana HOM05D005133 ORTHO05D006685 3.5e-130 469.2 431 62.6
Cc06_g17440 Coffea canephora HOM05D005133 ORTHO05D006685 4.6e-130 468.8 409 65.0
TPR.G34211 Trifolium pratense HOM05D005133 ORTHO05D006685 3.0e-129 466.1 422 63.0
MD07G1130200 Malus domestica HOM05D005133 ORTHO05D006685 1.1e-128 464.2 387 66.4
Migut.H02011 Erythranthe guttata HOM05D005133 ORTHO05D006685 1.9e-128 463.4 423 63.8
HanXRQChr17g0562291 Helianthus annuus HOM05D005133 ORTHO05D006685 5.6e-128 461.8 410 63.2
MSTRG.20869 Avicennia marina HOM05D005133 ORTHO05D006685 7.3e-128 461.5 408 64.7
arahy.Tifrunner.gnm1.ann1.YZ0HQS Arachis hypogaea HOM05D005133 ORTHO05D006685 1.6e-127 460.3 409 62.8
Migut.B01808 Erythranthe guttata HOM05D005133 ORTHO05D006685 1.6e-127 460.3 404 64.9
Migut.B01807 Erythranthe guttata HOM05D005133 ORTHO05D006685 2.1e-127 459.9 424 63.2
arahy.Tifrunner.gnm1.ann1.ZNWN3Y Arachis hypogaea HOM05D005133 ORTHO05D006685 3.6e-127 459.1 409 62.8
Solyc01g095230.4 Solanum lycopersicum HOM05D005133 ORTHO05D006685 8.1e-127 458.0 427 64.2
LjContig00310g0005517 Lotus japonicus HOM05D005133 ORTHO05D006685 1.4e-126 457.2 420 61.9
Sed0023612 Sechium edule HOM05D005133 ORTHO05D006685 1.8e-126 456.8 398 63.1
Sabra14G0066300 Salix brachista HOM05D005133 ORTHO05D006685 2.0e-125 453.4 457 58.9
ClCG05G014200 Citrullus lanatus HOM05D005133 ORTHO05D006685 3.4e-125 452.6 410 62.4
arahy.Tifrunner.gnm1.ann1.JRPH7J Arachis hypogaea HOM05D005133 ORTHO05D006685 4.4e-125 452.2 427 60.2
Phvul.011G052300 Phaseolus vulgaris HOM05D005133 ORTHO05D006685 4.4e-125 452.2 419 61.6
PGR031G0061 Punica granatum HOM05D005133 ORTHO05D006685 5.8e-125 451.8 414 63.0
RcHm_v2.0_Chr1g0358181 Rosa chinensis HOM05D005133 ORTHO05D006685 9.9e-125 451.1 423 61.7
Sopen01g039020 Solanum pennellii HOM05D005133 ORTHO05D006685 3.2e-123 446.0 427 63.0
Haze_15576 Corylus avellana HOM05D005133 ORTHO05D006685 4.2e-123 445.7 407 61.9
FAN06G1776 Fragaria x ananassa HOM05D005133 ORTHO05D006685 5.4e-123 445.3 385 64.2
PGSC0003DMG401000198 Solanum tuberosum HOM05D005133 ORTHO05D006685 9.2e-123 444.5 421 63.4
FvH4_7g15540 Fragaria vesca HOM05D005133 ORTHO05D006685 1.6e-122 443.7 385 64.2
Lalb_Chr19g0138411 Lupinus albus HOM05D005133 ORTHO05D006685 2.1e-122 443.4 414 61.4
FAN10G2939 Fragaria x ananassa HOM05D005133 ORTHO05D006685 6.0e-122 441.8 388 64.7
Aqoxy3G00498 Aquilegia oxysepala HOM05D005133 ORTHO05D006685 1.0e-121 441.0 397 62.5
Psat7g208960 Pisum sativum HOM05D005133 ORTHO05D006685 1.0e-121 441.0 426 59.9
SalBow1G3823 Salvia bowleyana HOM05D005133 ORTHO05D006685 1.0e-121 441.0 358 67.9
FAN10G2725 Fragaria x ananassa HOM05D005133 ORTHO05D006685 2.3e-121 439.9 388 64.4
Nn7g37315 Nelumbo nucifera HOM05D005133 ORTHO05D006685 3.9e-121 439.1 401 60.3
VMungo1127G1104 Vigna mungo HOM05D005133 ORTHO05D006685 5.1e-121 438.7 419 60.1
PSO135G0656 Papaver somniferum HOM05D005133 ORTHO05D006685 3.3e-120 436.0 406 59.6
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 9.6e-120 434.5 383 62.7
COL.COLO4_06373 Corchorus olitorius HOM05D005133 ORTHO05D006685 2.8e-119 433.0 334 72.2
Oeu015214.1 Olea europaea HOM05D005133 ORTHO05D006685 2.8e-119 433.0 505 52.5
Ca_20805_v3 Cicer arietinum L. HOM05D005133 ORTHO05D006685 3.6e-119 432.6 419 59.4
Cfa003860 Carpinus fangiana HOM05D005133 ORTHO05D006685 6.2e-119 431.8 353 68.8
FAN06G1340 Fragaria x ananassa HOM05D005133 ORTHO05D006685 2.4e-118 429.9 395 61.8
Sc01g0003150 Simmondsia chinensis HOM05D005133 ORTHO05D006685 4.0e-118 429.1 401 61.8
vmacro13220 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 6.9e-118 428.3 331 74.9
MELO3C006074.2 Cucumis melo HOM05D005133 ORTHO05D006685 3.4e-117 426.0 424 59.7
Haze_15581 Corylus avellana HOM05D005133 ORTHO05D006685 4.4e-117 425.6 405 60.5
TWI34G1432 Tripterygium wilfordii HOM05D005133 ORTHO05D006685 4.4e-117 425.6 416 60.3
Medtr4g068010 Medicago truncatula HOM05D005133 ORTHO05D006685 5.8e-117 425.2 421 58.4
CsaV3_3G008530 Cucumis sativus L. HOM05D005133 ORTHO05D006685 1.4e-115 420.6 412 59.5
Nitab4.5_0000915g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 1.4e-115 420.6 399 62.7
Gohir.A07G140500 Gossypium hirsutum HOM05D005133 ORTHO05D006685 9.3e-115 417.9 379 66.2
Glyma.12G050200 Glycine max HOM05D005133 ORTHO05D006685 1.1e-112 411.0 363 64.7
ECA234G4221 Erigeron canadensis HOM05D005133 ORTHO05D006685 2.1e-111 406.8 404 60.1
CANSAT01G0674 Cannabis sativa HOM05D005133 ORTHO05D006685 2.8e-111 406.4 380 63.7
AUR62022626 Chenopodium quinoa HOM05D005133 ORTHO05D006685 2.0e-109 400.2 388 60.1
Hund27238 Selenicereus undatus HOM05D005133 ORTHO05D006685 6.4e-108 395.2 424 57.3
EL10Ac1g00344 Beta vulgaris HOM05D005133 ORTHO05D006685 2.4e-107 393.3 414 55.1
CAN.G78.137 Capsicum annuum HOM05D005133 ORTHO05D006685 3.2e-107 392.9 408 58.3
Eucgr.J01063 Eucalyptus grandis HOM05D005133 ORTHO05D006685 3.5e-106 389.4 397 56.2
Lsat_1_v5_gn_4_34900 Lactuca sativa HOM05D005133 ORTHO05D006685 3.5e-106 389.4 426 55.9
unitig_0.g335 Utricularia gibba HOM05D005133 ORTHO05D006685 4.6e-106 389.0 432 55.1
THA.LOC104817324 Tarenaya hassleriana HOM05D005133 ORTHO05D006685 1.0e-105 387.9 412 54.6
Aa31LG1G27580 Aethionema arabicum HOM05D005133 ORTHO05D006685 4.8e-103 379.0 411 54.0
AUR62004420 Chenopodium quinoa HOM05D005133 ORTHO05D006685 1.1e-102 377.9 384 58.6
AL4G45460 Arabidopsis lyrata HOM05D005133 ORTHO05D006685 1.2e-101 374.4 410 52.4
A05p01630 Brassica napus HOM05D005133 ORTHO05D006685 5.8e-101 372.1 411 54.0
Os01g0226500 Oryza sativa ssp. japonica HOM05D005133 ORTHO05D006685 4.9e-100 369.0 410 54.1
ATR0626G352 Amborella trichopoda HOM05D005133 ORTHO05D006685 1.4e-99 367.5 336 62.8
BraA05t19159Z Brassica rapa HOM05D005133 ORTHO05D006685 1.9e-99 367.1 402 53.7
BcaC02g12707 Brassica carinata HOM05D005133 ORTHO05D006685 3.5e-98 362.8 402 53.7
C04p01840 Brassica napus HOM05D005133 ORTHO05D006685 3.5e-98 362.8 402 53.0
Sp5g32810 Schrenkiella parvula HOM05D005133 ORTHO05D006685 1.0e-97 361.3 415 52.0
BcaC02g12500 Brassica carinata HOM05D005133 ORTHO05D006685 5.1e-97 359.0 402 52.7
vmacro22850 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 1.5e-96 357.5 351 60.1
MBI16_g41624_MAGBIO Magnolia biondii HOM05D005133 ORTHO05D006685 3.7e-95 352.8 414 52.4
Thhalv10001493m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 8.2e-95 351.7 411 51.3
Carub.0004s2888 Capsella rubella HOM05D005133 ORTHO05D006685 2.4e-94 350.1 410 49.5
Thhalv10028732m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 6.9e-94 348.6 410 51.7
Zm00001eb339090 Zea mays HOM05D005133 ORTHO05D006685 7.1e-91 338.6 442 49.3
CARHR141470 Cardamine hirsuta HOM05D005133 ORTHO05D006685 1.1e-86 324.7 429 46.2
RcHm_v2.0_Chr1g0357891 Rosa chinensis HOM05D005133 ORTHO05D006685 1.8e-86 323.9 376 54.3
RcHm_v2.0_Chr1g0358091 Rosa chinensis HOM05D005133 ORTHO05D006685 4.1e-86 322.8 291 64.6
AT2G46200 Arabidopsis thaliana HOM05D005133 ORTHO05D006685 4.6e-82 309.3 375 51.5
Ah.05g180080 Amaranthus hybridus HOM05D005133 ORTHO05D006685 6.7e-73 278.9 412 46.4
HPP92_023966 Vanilla planifolia HOM05D005133 ORTHO05D006685 6.7e-65 252.3 332 49.1
PSO384G2230 Papaver somniferum HOM05D005133 ORTHO05D006685 1.7e-63 247.7 237 57.0
CDE09G0708 Ceratophyllum demersum HOM05D005133 ORTHO05D006685 9.1e-62 241.9 323 52.9
Pp3c4_26280 Physcomitrium patens HOM05D005133 ORTHO05D006685 1.0e-60 238.4 315 46.0
RcHm_v2.0_Chr1g0358051 Rosa chinensis HOM05D005133 ORTHO05D006685 1.7e-60 237.7 355 46.2
PSO478G1127 Papaver somniferum HOM05D005133 ORTHO05D006685 9.4e-59 231.9 262 57.3
Mapoly0001s0322 Marchantia polymorpha HOM05D005133 ORTHO05D006685 2.3e-57 227.3 439 38.3
arahy.Tifrunner.gnm1.ann1.Z00T6Z Arachis hypogaea HOM05D005133 ORTHO05D006685 6.3e-55 219.2 239 53.6
AagrBONN_evm.TU.Sc2ySwM_344.4499 Anthoceros agrestis HOM05D005133 ORTHO05D006685 1.6e-42 177.9 410 34.1
vmacro01745 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 1.4e-33 148.3 118 71.2
FAN03G0151 Fragaria x ananassa HOM05D005133 ORTHO05D006685 3.7e-31 140.2 120 60.8
SMO239G0112 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 4.1e-30 136.7 353 33.1
Zm00001eb201120 Zea mays HOM05D005133 ORTHO05D006685 2.7e-29 134.0 148 52.0
Zm00001eb407270 Zea mays HOM05D005133 ORTHO05D006685 2.7e-29 134.0 148 52.0
Glyma.11G125567 Glycine max HOM05D005133 ORTHO05D006685 2.8e-26 124.0 125 51.2
Gohir.A03G093200 Gossypium hirsutum HOM05D005133 ORTHO05D006685 4.0e-25 120.2 171 49.1
CBR_g45167 Chara braunii HOM05D005133 ORTHO05D006685 5.2e-25 119.8 290 32.8
SHI13349 Sapria himalayana HOM05D005133 ORTHO05D006685 2.4e-22 110.9 142 47.9
HanXRQChr04g0107751 Helianthus annuus HOM05D005133 ORTHO05D006685 5.4e-22 109.8 98 71.4
Rhsim01G0168000 Rhododendron simsii HOM05D005133 ORTHO05D006685 2.3e-20 104.4 73 82.2
AUR62025074 Chenopodium quinoa HOM05D005133 ORTHO05D006685 1.7e-12 78.2 65 66.2
SMO117G0103 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 1.7e-12 78.2 184 38.0
FvH4_2g33570 Fragaria vesca HOM05D000073 ORTHO05D015767 5.1e-12 76.6 88 53.4
SMO114G0022 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 2.5e-11 74.3 103 44.7
C04p01870 Brassica napus HOM05D005133 ORTHO05D006685 4.3e-11 73.6 39 71.8
RcHm_v2.0_Chr1g0358101 Rosa chinensis HOM05D004139 ORTHO05D004873 6.2e-10 69.7 121 38.0
Rhsim01G0167900 Rhododendron simsii HOM05D000030 ORTHO05D000009 2.6e-08 64.3 42 81.0
vmacro01747 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 5.8e-08 63.2 94 43.6
MELO3C033909.2 Cucumis melo HOM05D005133 ORTHO05D020525 1.3e-07 62.0 74 58.1
MELO3C030134.2 Cucumis melo HOM05D005133 ORTHO05D006685 1.1e-06 58.9 52 67.3
MELO3C030860.2 Cucumis melo HOM05D005133 ORTHO05D006685 2.4e-06 57.8 47 72.3
MELO3C031967.2 Cucumis melo HOM05D005133 ORTHO05D165940 2.4e-06 57.8 56 67.9
MELO3C032291.2 Cucumis melo HOM05D005133 ORTHO05D167678 5.4e-06 56.6 45 71.1
MELO3C033838.2 Cucumis melo HOM05D005133 ORTHO05D166559 7.1e-06 56.2 48 66.7


User provided reference genes

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