Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009326 Camellia sinensis var. sinensis HOM05D001455 ORTHO05D020251 1.2e-121 439.9 230 100.0
CSS0001034 Camellia sinensis var. sinensis HOM05D001455 ORTHO05D001587 4.0e-117 424.9 227 97.8
Dinv40600 Davidia involucrata HOM05D001455 ORTHO05D001587 2.5e-74 282.7 238 68.9
Medtr2g014460 Medicago truncatula HOM05D001455 ORTHO05D001587 1.8e-61 240.0 225 64.4
Ca_00360_v3 Cicer arietinum L. HOM05D001455 ORTHO05D001587 3.1e-61 239.2 227 63.0
TAR627G0562 Trochodendron aralioides HOM05D001455 ORTHO05D001587 7.8e-60 234.6 233 61.4
Psat1g204400 Pisum sativum HOM05D001455 ORTHO05D001587 3.9e-59 232.3 236 58.9
VMungo0540G1392 Vigna mungo HOM05D001455 ORTHO05D001587 5.0e-59 231.9 231 58.9
Phvul.006G182300 Phaseolus vulgaris HOM05D001455 ORTHO05D001587 8.6e-59 231.1 231 59.7
Nn1g04232 Nelumbo nucifera HOM05D001455 ORTHO05D001587 1.1e-58 230.7 226 60.6
CANSAT35G2020 Cannabis sativa HOM05D001455 ORTHO05D001587 3.3e-58 229.2 230 60.4
Nitab4.5_0001955g0150 Nicotiana tabacum HOM05D001455 ORTHO05D001587 5.6e-58 228.4 230 60.0
MBI07_g17467_MAGBIO Magnolia biondii HOM05D001455 ORTHO05D020251 1.2e-57 227.3 240 58.8
MBI07_g44129_MAGBIO Magnolia biondii HOM05D001455 ORTHO05D020251 1.6e-57 226.9 241 58.9
Lj6g0001493 Lotus japonicus HOM05D001455 ORTHO05D001587 2.1e-57 226.5 226 60.2
ClCG03G008010 Citrullus lanatus HOM05D001455 ORTHO05D001587 1.4e-56 223.8 230 58.7
MELO3C002626.2 Cucumis melo HOM05D001455 ORTHO05D001587 1.8e-56 223.4 229 58.1
Solyc02g077680.4 Solanum lycopersicum HOM05D001455 ORTHO05D001587 5.2e-56 221.9 235 56.2
Sopen02g022580 Solanum pennellii HOM05D001455 ORTHO05D001587 5.2e-56 221.9 235 56.2
TPR.G11755 Trifolium pratense HOM05D001455 ORTHO05D001587 1.2e-55 220.7 224 60.7
CsaV3_1G012560 Cucumis sativus L. HOM05D001455 ORTHO05D001587 2.6e-55 219.5 231 57.6
FAN11G0658 Fragaria x ananassa HOM05D001455 ORTHO05D001587 2.6e-55 219.5 193 66.8
MD10G1289300 Malus domestica HOM05D001455 ORTHO05D001587 2.6e-55 219.5 231 57.6
Sed0012280 Sechium edule HOM05D001455 ORTHO05D001587 4.4e-55 218.8 227 56.8
Sed0027676 Sechium edule HOM05D001455 ORTHO05D001587 7.5e-55 218.0 206 59.2
FAN21G3311 Fragaria x ananassa HOM05D001455 ORTHO05D001587 2.2e-54 216.5 197 65.0
Prupe.4G052400 Prunus persica HOM05D001455 ORTHO05D001587 2.9e-54 216.1 227 59.9
CAN.G529.54 Capsicum annuum HOM05D001455 ORTHO05D001587 3.7e-54 215.7 235 56.2
COL.COLO4_31413 Corchorus olitorius HOM05D001455 ORTHO05D001587 6.4e-54 214.9 228 60.1
DCAR_004047 Daucus carota HOM05D001455 ORTHO05D001587 1.1e-53 214.2 195 63.1
FAN16G2036 Fragaria x ananassa HOM05D001455 ORTHO05D001587 7.8e-52 208.0 220 60.5
Cpa.g.sc27.5 Carica papaya HOM05D001455 ORTHO05D001587 3.0e-51 206.1 232 54.7
Oeu029177.1 Olea europaea HOM05D001455 ORTHO05D001587 1.1e-50 204.1 246 51.6
arahy.Tifrunner.gnm1.ann1.IXM19M Arachis hypogaea HOM05D001455 ORTHO05D001587 1.5e-50 203.8 189 60.8
FvH4_3g08650 Fragaria vesca HOM05D001455 ORTHO05D001587 1.5e-50 203.8 192 62.5
arahy.Tifrunner.gnm1.ann1.JTF09J Arachis hypogaea HOM05D001455 ORTHO05D001587 2.8e-49 199.5 211 57.8
SalBow8G1615 Salvia bowleyana HOM05D001455 ORTHO05D001587 2.8e-49 199.5 239 53.1
SalBow8G2629 Salvia bowleyana HOM05D001455 ORTHO05D001587 2.8e-49 199.5 239 53.1
Migut.M01109 Erythranthe guttata HOM05D001455 ORTHO05D001587 6.8e-48 194.9 238 46.6
Manes.17G049200 Manihot esculenta HOM05D001455 ORTHO05D001587 2.6e-47 193.0 216 55.6
PGSC0003DMG400031765 Solanum tuberosum HOM05D001455 ORTHO05D001587 4.4e-47 192.2 233 50.2
Potri.004G048600 Populus trichocarpa HOM05D001455 ORTHO05D001587 2.2e-46 189.9 241 49.8
Gohir.A05G159000 Gossypium hirsutum HOM05D001455 ORTHO05D001587 4.9e-46 188.7 183 59.6
Gohir.D05G161700 Gossypium hirsutum HOM05D001455 ORTHO05D001587 2.4e-45 186.4 200 56.0
Gorai.009G166800 Gossypium raimondii HOM05D001455 ORTHO05D001587 2.4e-45 186.4 200 56.0
CDE09G0851 Ceratophyllum demersum HOM05D001455 ORTHO05D020251 3.2e-45 186.0 242 49.6
Duzib192G0388 Durio zibethinus HOM05D001455 ORTHO05D001587 3.5e-44 182.6 162 62.3
Sabra04G0030500 Salix brachista HOM05D001455 ORTHO05D001587 1.3e-43 180.6 239 48.5
Nitab4.5_0004359g0030 Nicotiana tabacum HOM05D001455 ORTHO05D001587 1.7e-43 180.3 229 51.5
ATR0730G102 Amborella trichopoda HOM05D001455 ORTHO05D001587 4.0e-40 169.1 214 49.1
Lsat_1_v5_gn_7_22741 Lactuca sativa HOM05D001455 ORTHO05D001587 3.4e-39 166.0 231 50.6
SalBow8G0941 Salvia bowleyana HOM05D001455 ORTHO05D020251 1.7e-35 153.7 188 50.0
Peaxi162Scf00926g00112 Petunia axillaris HOM05D001455 ORTHO05D001587 3.0e-35 152.9 169 52.7
HanXRQChr04g0117131 Helianthus annuus HOM05D001455 ORTHO05D001587 2.5e-34 149.8 220 46.4
SEGI_05948 Sequoiadendron giganteum HOM05D001455 ORTHO05D001587 4.3e-34 149.1 171 48.0
Dinv09017 Davidia involucrata HOM05D000027 ORTHO05D000066 2.6e-31 139.8 102 75.5
AagrBONN_evm.TU.Sc2ySwM_228.142 Anthoceros agrestis HOM05D001455 ORTHO05D001587 4.9e-22 109.0 183 35.0
Mapoly0038s0107 Marchantia polymorpha HOM05D001455 ORTHO05D001587 6.4e-22 108.6 197 35.5
Pp3c2_14470 Physcomitrium patens HOM05D001455 ORTHO05D001587 4.6e-20 102.4 204 36.8
FvH4_2g24510 Fragaria vesca HOM05D001455 ORTHO05D017952 1.9e-18 97.1 131 49.6
PRCOL_00004468 Prasinoderma coloniale HOM05D001455 ORTHO05D001587 3.3e-18 96.3 168 36.3
Cre12.g552200 Chlamydomonas reinhardtii HOM05D001455 ORTHO05D001587 8.1e-17 91.7 178 34.8
ECA236G3003 Erigeron canadensis HOM05D001455 ORTHO05D001587 9.9e-15 84.7 48 79.2
RcHm_v2.0_Chr5g0009141 Rosa chinensis HOM05D001455 ORTHO05D001587 1.3e-14 84.3 44 88.6
Actinidia16572 Actinidia chinensis HOM05D001455 ORTHO05D001587 9.3e-13 78.2 44 81.8
GSVIVG01021111001 Vitis vinifera HOM05D001455 ORTHO05D001587 3.5e-12 76.3 40 85.0
MCO03G482 Micromonas commoda HOM05D001455 ORTHO05D001587 3.9e-11 72.8 119 34.5
Cc02_g13830 Coffea canephora HOM05D001455 ORTHO05D001587 8.7e-11 71.6 38 86.8
FAN19G1425 Fragaria x ananassa HOM05D000595 ORTHO05D017952 1.1e-10 71.2 53 64.2
Duzib160G0811 Durio zibethinus HOM05D001455 ORTHO05D020251 9.6e-10 68.2 40 77.5
SMO137G0164 Selaginella moellendorffii HOM05D001455 ORTHO05D001587 2.1e-09 67.0 42 69.0
CBR_g49315 Chara braunii HOM05D001455 ORTHO05D001587 1.2e-07 61.2 168 26.8
PSO017G4172 Papaver somniferum HOM05D000485 ORTHO05D000341 5.8e-07 58.9 78 37.2
PSO478G4737 Papaver somniferum HOM05D000485 ORTHO05D000341 5.8e-07 58.9 78 37.2
Eucgr.F02763 Eucalyptus grandis HOM05D000485 ORTHO05D000341 7.6e-07 58.5 78 39.7
GSVIVG01009980001 Vitis vinifera HOM05D000485 ORTHO05D000341 1.7e-06 57.4 78 39.7
Oeu001552.1 Olea europaea HOM05D000485 ORTHO05D000341 2.2e-06 57.0 86 36.0
CAN.G473.123 Capsicum annuum HOM05D000485 ORTHO05D000341 4.9e-06 55.8 78 37.2
Cc10_g13250 Coffea canephora HOM05D000485 ORTHO05D000341 4.9e-06 55.8 79 36.7
Potri.005G185600 Populus trichocarpa HOM05D000485 ORTHO05D000341 4.9e-06 55.8 78 39.7
Zm00001eb175400 Zea mays HOM05D000485 ORTHO05D000341 4.9e-06 55.8 78 37.2
CDE06G1272 Ceratophyllum demersum HOM05D000485 ORTHO05D000341 6.4e-06 55.5 78 35.9
Peaxi162Scf00505g00032 Petunia axillaris HOM05D000485 ORTHO05D000341 8.4e-06 55.1 78 38.5


User provided reference genes

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