Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009316 Camellia sinensis var. sinensis HOM05D000439 ORTHO05D002302 5.8e-109 397.5 192 100.0
Rhsim07G0176800 Rhododendron simsii HOM05D000439 ORTHO05D002302 2.8e-15 86.3 75 60.0
Rhsim01G0002600 Rhododendron simsii HOM05D000439 ORTHO05D001363 8.3e-15 84.7 98 52.0
vmacro05059 Vaccinium macrocarpon HOM05D000439 ORTHO05D001363 1.1e-14 84.3 81 54.3
COL.COLO4_36065 Corchorus olitorius HOM05D000439 ORTHO05D001363 2.8e-10 69.7 94 40.4
QL03p002724 Quercus lobata HOM05D000439 ORTHO05D002302 4.7e-10 68.9 74 45.9
Thecc.05G251600 Theobroma cacao HOM05D000439 ORTHO05D002302 8.0e-10 68.2 155 32.3
Lj7C482G14 Lonicera japonica HOM05D000439 ORTHO05D002302 1.0e-09 67.8 111 38.7
TAR629G2317 Trochodendron aralioides HOM05D000439 ORTHO05D001363 1.8e-09 67.0 92 41.3
Dinv26588 Davidia involucrata HOM05D000439 ORTHO05D002302 3.1e-09 66.2 79 46.8
QL03p002736 Quercus lobata HOM05D000439 ORTHO05D002302 4.0e-09 65.9 90 36.7
QL07p015783 Quercus lobata HOM05D000439 ORTHO05D002302 4.0e-09 65.9 90 37.8
QL03p002703 Quercus lobata HOM05D000439 ORTHO05D002302 8.9e-09 64.7 76 44.7
COL.COLO4_36068 Corchorus olitorius HOM05D000439 ORTHO05D001363 2.0e-08 63.5 81 44.4
vmacro05061 Vaccinium macrocarpon HOM05D000439 ORTHO05D002302 2.6e-08 63.2 96 40.6
CSS0004188 Camellia sinensis var. sinensis HOM05D000439 ORTHO05D002302 4.4e-08 62.4 79 45.6
Gorai.007G263300 Gossypium raimondii HOM05D000439 ORTHO05D002302 5.8e-08 62.0 155 31.6
CSS0048396 Camellia sinensis var. sinensis HOM05D000439 ORTHO05D002302 1.3e-07 60.8 79 44.3
TAR627G0997 Trochodendron aralioides HOM05D000439 ORTHO05D001363 1.3e-07 60.8 92 39.1
AUR62002306 Chenopodium quinoa HOM05D000439 ORTHO05D002302 1.7e-07 60.5 104 31.7
SalBow4G2078 Salvia bowleyana HOM05D000439 ORTHO05D002302 1.7e-07 60.5 76 40.8
AUR62015384 Chenopodium quinoa HOM05D000439 ORTHO05D002302 2.2e-07 60.1 104 32.7
Gohir.D11G247100 Gossypium hirsutum HOM05D000439 ORTHO05D002302 2.2e-07 60.1 155 31.0
MD12G1229200 Malus domestica HOM05D000439 ORTHO05D002302 2.2e-07 60.1 82 40.2
Nn1g03256 Nelumbo nucifera HOM05D000439 ORTHO05D001363 2.2e-07 60.1 75 41.3
Manes.09G160800 Manihot esculenta HOM05D000439 ORTHO05D012413 2.9e-07 59.7 77 42.9
Duzib177G0767 Durio zibethinus HOM05D000439 ORTHO05D002302 3.7e-07 59.3 74 43.2
Eucgr.B01767 Eucalyptus grandis HOM05D000439 ORTHO05D002302 3.7e-07 59.3 76 42.1
MD04G1214300 Malus domestica HOM05D000439 ORTHO05D002302 3.7e-07 59.3 80 42.5
Sabra05G0041000 Salix brachista HOM05D000439 ORTHO05D002302 3.7e-07 59.3 76 46.1
MSTRG.18325 Avicennia marina HOM05D000439 ORTHO05D002302 4.9e-07 58.9 77 40.3
Prupe.6G334500 Prunus persica HOM05D000439 ORTHO05D002302 4.9e-07 58.9 81 39.5
RcHm_v2.0_Chr3g0452971 Rosa chinensis HOM05D000439 ORTHO05D002302 6.4e-07 58.5 84 41.7
MBI19_g33781_MAGBIO Magnolia biondii HOM05D000439 ORTHO05D001363 8.3e-07 58.2 95 34.7
QL03p002685 Quercus lobata HOM05D000439 ORTHO05D002302 8.3e-07 58.2 74 41.9
CSS0036023 Camellia sinensis var. sinensis HOM05D000439 ORTHO05D002302 1.1e-06 57.8 96 37.5
Manes.09G160601 Manihot esculenta HOM05D000439 ORTHO05D002302 1.1e-06 57.8 75 44.0
Nitab4.5_0001453g0030 Nicotiana tabacum HOM05D000439 ORTHO05D002302 1.1e-06 57.8 101 38.6
CSS0001274 Camellia sinensis var. sinensis HOM05D000439 ORTHO05D001363 1.4e-06 57.4 93 34.4
MBI14_g17371_MAGBIO Magnolia biondii HOM05D000439 ORTHO05D001363 1.4e-06 57.4 95 34.7
TWI38G0491 Tripterygium wilfordii HOM05D000439 ORTHO05D001363 1.4e-06 57.4 95 35.8
Dinv40832 Davidia involucrata HOM05D000439 ORTHO05D001363 1.9e-06 57.0 76 36.8
Nitab4.5_0004296g0020 Nicotiana tabacum HOM05D000439 ORTHO05D002302 1.9e-06 57.0 100 38.0
Prupe.6G334100 Prunus persica HOM05D000439 ORTHO05D002302 1.9e-06 57.0 95 35.8
RcHm_v2.0_Chr3g0452991 Rosa chinensis HOM05D000439 ORTHO05D002302 1.9e-06 57.0 78 43.6
TWI56G0175 Tripterygium wilfordii HOM05D000439 ORTHO05D002302 1.9e-06 57.0 76 40.8
Gohir.A11G236500 Gossypium hirsutum HOM05D000439 ORTHO05D002302 2.4e-06 56.6 155 29.0
PSO675G0680 Papaver somniferum HOM05D000439 ORTHO05D001363 2.4e-06 56.6 92 33.7
FvH4_6g04390 Fragaria vesca HOM05D000439 ORTHO05D002302 3.2e-06 56.2 81 39.5
FvH4_6g04410 Fragaria vesca HOM05D000439 ORTHO05D002302 3.2e-06 56.2 81 39.5
Gohir.D11G246820 Gossypium hirsutum HOM05D000439 ORTHO05D002302 3.2e-06 56.2 74 41.9
Nitab4.5_0007864g0010 Nicotiana tabacum HOM05D000439 ORTHO05D002302 3.2e-06 56.2 67 43.3
RcHm_v2.0_Chr1g0379641 Rosa chinensis HOM05D000439 ORTHO05D002302 3.2e-06 56.2 104 37.5
Migut.D00433 Erythranthe guttata HOM05D000439 ORTHO05D002302 4.1e-06 55.8 77 37.7
FAN09G0983 Fragaria x ananassa HOM05D000439 ORTHO05D002302 4.1e-06 55.8 81 39.5
FAN09G3873 Fragaria x ananassa HOM05D000439 ORTHO05D002302 4.1e-06 55.8 81 39.5
Potri.005G043900 Populus trichocarpa HOM05D000439 ORTHO05D002302 4.1e-06 55.8 76 44.7
RcHm_v2.0_Chr3g0452981 Rosa chinensis HOM05D000439 ORTHO05D002302 4.1e-06 55.8 75 44.0
RcHm_v2.0_Chr3g0453061 Rosa chinensis HOM05D000439 ORTHO05D002302 5.4e-06 55.5 81 42.0
RcHm_v2.0_Chr3g0453081 Rosa chinensis HOM05D000439 ORTHO05D002302 5.4e-06 55.5 81 42.0
FAN14G5795 Fragaria x ananassa HOM05D000439 ORTHO05D002302 7.0e-06 55.1 81 39.5
Gorai.007G262900 Gossypium raimondii HOM05D000439 ORTHO05D002302 7.0e-06 55.1 74 40.5
MD04G1214700 Malus domestica HOM05D000439 ORTHO05D002302 7.0e-06 55.1 88 34.1
Thecc.05G251700 Theobroma cacao HOM05D000439 ORTHO05D002302 7.0e-06 55.1 91 35.2
PSO541G3778 Papaver somniferum HOM05D000439 ORTHO05D001363 9.2e-06 54.7 92 33.7


User provided reference genes

Program Settings