Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009313 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D018175 6.8e-44 180.3 90 100.0
CSS0021399 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D018175 2.1e-24 115.5 91 69.2
CSS0037989 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D018175 6.0e-24 114.0 91 69.2
Actinidia39994 Actinidia chinensis HOM05D005077 ORTHO05D006889 1.1e-20 103.2 78 66.7
Haze_04419 Corylus avellana HOM05D005077 ORTHO05D006889 6.8e-20 100.5 77 68.8
Cfa006359 Carpinus fangiana HOM05D005077 ORTHO05D006889 2.6e-19 98.6 77 67.5
QL07p018541 Quercus lobata HOM05D005077 ORTHO05D006889 3.4e-19 98.2 78 65.4
Oeu041238.1 Olea europaea HOM05D005077 ORTHO05D006889 4.4e-19 97.8 71 69.0
Rhsim05G0172000 Rhododendron simsii HOM05D005077 ORTHO05D006889 1.3e-18 96.3 82 62.2
Lj2A44T74 Lonicera japonica HOM05D005077 ORTHO05D006889 1.1e-17 93.2 78 60.3
TAR362G0145 Trochodendron aralioides HOM05D005077 ORTHO05D006889 1.1e-17 93.2 77 64.9
Lsat_1_v5_gn_2_108321 Lactuca sativa HOM05D005077 ORTHO05D006889 2.4e-17 92.0 78 59.0
PSO832G3809 Papaver somniferum HOM05D005077 ORTHO05D006889 2.4e-17 92.0 77 58.4
PSO210G4243 Papaver somniferum HOM05D005077 ORTHO05D006889 4.2e-17 91.3 77 58.4
Sabra19G0032000 Salix brachista HOM05D005077 ORTHO05D006889 1.2e-16 89.7 78 57.7
DCAR_003547 Daucus carota HOM05D005077 ORTHO05D006889 1.6e-16 89.4 71 63.4
GSVIVG01023486001 Vitis vinifera HOM05D005077 ORTHO05D006889 1.6e-16 89.4 77 61.0
HanXRQChr14g0454211 Helianthus annuus HOM05D005077 ORTHO05D006889 2.1e-16 89.0 78 56.4
CiPaw.07G073200 Carya illinoinensis HOM05D005077 ORTHO05D006889 2.7e-16 88.6 78 60.3
Oeu006006.2 Olea europaea HOM05D005077 ORTHO05D006889 2.7e-16 88.6 77 57.1
RcHm_v2.0_Chr3g0449521 Rosa chinensis HOM05D005077 ORTHO05D006889 4.6e-16 87.8 78 57.7
FvH4_6g01810 Fragaria vesca HOM05D005077 ORTHO05D006889 6.0e-16 87.4 78 57.7
FAN09G0372 Fragaria x ananassa HOM05D005077 ORTHO05D006889 6.0e-16 87.4 78 57.7
FAN14G2113 Fragaria x ananassa HOM05D005077 ORTHO05D006889 6.0e-16 87.4 78 57.7
FAN14G3018 Fragaria x ananassa HOM05D005077 ORTHO05D006889 6.0e-16 87.4 78 57.7
FAN05G3606 Fragaria x ananassa HOM05D005077 ORTHO05D019498 7.8e-16 87.0 78 57.7
MSTRG.27374 Avicennia marina HOM05D005077 ORTHO05D006889 1.3e-15 86.3 78 56.4
Potri.019G019600 Populus trichocarpa HOM05D005077 ORTHO05D006889 1.3e-15 86.3 77 55.8
PGR142G0621 Punica granatum HOM05D005077 ORTHO05D006889 1.3e-15 86.3 77 55.8
CANSAT54G1999 Cannabis sativa HOM05D005077 ORTHO05D006889 3.9e-15 84.7 71 63.4
Nitab4.5_0003780g0090 Nicotiana tabacum HOM05D005077 ORTHO05D006889 6.6e-15 84.0 77 53.2
Prupe.6G350500 Prunus persica HOM05D005077 ORTHO05D006889 1.5e-14 82.8 78 57.7
SalBow3G3009 Salvia bowleyana HOM05D005077 ORTHO05D006889 1.9e-14 82.4 77 55.8
Nitab4.5_0006737g0070 Nicotiana tabacum HOM05D005077 ORTHO05D006889 3.3e-14 81.6 77 50.6
Duzib177G0384 Durio zibethinus HOM05D005077 ORTHO05D006889 5.6e-14 80.9 78 55.1
CARHR078630 Cardamine hirsuta HOM05D005077 ORTHO05D006889 7.3e-14 80.5 78 51.3
MELO3C008703.2 Cucumis melo HOM05D005077 ORTHO05D006889 7.3e-14 80.5 77 51.9
Lalb_Chr22g0358841 Lupinus albus HOM05D005077 ORTHO05D006889 7.3e-14 80.5 78 52.6
AT3G04480 Arabidopsis thaliana HOM05D005077 ORTHO05D006889 9.6e-14 80.1 78 51.3
Ciclev10019185m.g Citrus clementina HOM05D005077 ORTHO05D006889 9.6e-14 80.1 78 57.7
Ca_08303_v3 Cicer arietinum L. HOM05D005077 ORTHO05D006889 1.2e-13 79.7 78 53.8
CsaV3_2G009810 Cucumis sativus L. HOM05D005077 ORTHO05D006889 1.2e-13 79.7 78 48.7
Thhalv10020155m.g Eutrema salsugineum HOM05D005077 ORTHO05D006889 1.2e-13 79.7 78 51.3
Potri.013G047400 Populus trichocarpa HOM05D005077 ORTHO05D006889 1.2e-13 79.7 78 52.6
Thecc.05G270400 Theobroma cacao HOM05D005077 ORTHO05D006889 1.6e-13 79.3 78 53.8
Carub.0003s0364 Capsella rubella HOM05D005077 ORTHO05D006889 2.8e-13 78.6 78 50.0
MD04G1230700 Malus domestica HOM05D005077 ORTHO05D006889 2.8e-13 78.6 78 53.8
Aqoxy5G00195 Aquilegia oxysepala HOM05D005077 ORTHO05D006889 3.6e-13 78.2 77 54.5
AL3G14430 Arabidopsis lyrata HOM05D005077 ORTHO05D006889 3.6e-13 78.2 78 52.6
Lj1g0022218 Lotus japonicus HOM05D005077 ORTHO05D006889 3.6e-13 78.2 71 56.3
TWI36G1092 Tripterygium wilfordii HOM05D005077 ORTHO05D006889 3.6e-13 78.2 78 53.8
PGSC0003DMG400019116 Solanum tuberosum HOM05D005077 ORTHO05D018175 4.7e-13 77.8 77 50.6
Atru.chr2.994 Acer truncatum HOM05D005077 ORTHO05D018175 6.2e-13 77.4 73 57.5
Peaxi162Scf00528g00225 Petunia axillaris HOM05D005077 ORTHO05D006889 6.2e-13 77.4 77 50.6
BcaC05g30222 Brassica carinata HOM05D005077 ORTHO05D006889 8.1e-13 77.0 78 48.7
Sp3g03330 Schrenkiella parvula HOM05D005077 ORTHO05D006889 8.1e-13 77.0 78 51.3
Cc02_g08770 Coffea canephora HOM05D005077 ORTHO05D006889 1.4e-12 76.3 77 50.6
PGSC0003DMG400011494 Solanum tuberosum HOM05D005077 ORTHO05D006889 1.4e-12 76.3 77 50.6
COL.COLO4_15493 Corchorus olitorius HOM05D005077 ORTHO05D006889 1.8e-12 75.9 77 49.4
Phvul.001G114900 Phaseolus vulgaris HOM05D005077 ORTHO05D006889 2.4e-12 75.5 78 51.3
Aa31LG5G14920 Aethionema arabicum HOM05D005077 ORTHO05D006889 3.1e-12 75.1 78 47.4
arahy.Tifrunner.gnm1.ann1.FVV1VG Arachis hypogaea HOM05D005077 ORTHO05D006889 4.0e-12 74.7 79 51.9
Glyma.19G115700 Glycine max HOM05D005077 ORTHO05D006889 4.0e-12 74.7 78 50.0
Psat3g087440 Pisum sativum HOM05D005077 ORTHO05D006889 5.3e-12 74.3 78 51.3
Solyc04g010080.3 Solanum lycopersicum HOM05D005077 ORTHO05D006889 5.3e-12 74.3 77 49.4
Sopen04g005220 Solanum pennellii HOM05D005077 ORTHO05D006889 5.3e-12 74.3 77 49.4
THA.LOC104827285 Tarenaya hassleriana HOM05D005077 ORTHO05D006889 6.9e-12 73.9 77 46.8
Manes.08G139800 Manihot esculenta HOM05D005077 ORTHO05D006889 1.2e-11 73.2 77 53.2
Gohir.D11G257100 Gossypium hirsutum HOM05D005077 ORTHO05D006889 1.5e-11 72.8 78 51.3
Gorai.007G275500 Gossypium raimondii HOM05D005077 ORTHO05D006889 1.5e-11 72.8 78 51.3
arahy.Tifrunner.gnm1.ann1.2UET99 Arachis hypogaea HOM05D005077 ORTHO05D006889 2.0e-11 72.4 81 49.4
BraA03t12537Z Brassica rapa HOM05D005077 ORTHO05D006889 2.0e-11 72.4 78 48.7
BcaB04g19332 Brassica carinata HOM05D005077 ORTHO05D006889 2.6e-11 72.0 78 47.4
A03p33620 Brassica napus HOM05D005077 ORTHO05D006889 2.6e-11 72.0 78 50.0
Eucgr.B02151 Eucalyptus grandis HOM05D005077 ORTHO05D006889 2.6e-11 72.0 78 47.4
Eucgr.B02424 Eucalyptus grandis HOM05D005077 ORTHO05D006889 2.6e-11 72.0 78 47.4
BolC3t16351H Brassica oleracea HOM05D005077 ORTHO05D006889 4.4e-11 71.2 78 48.7
TPR.G4698 Trifolium pratense HOM05D005077 ORTHO05D006889 4.4e-11 71.2 82 50.0
arahy.Tifrunner.gnm1.ann1.2V8KIQ Arachis hypogaea HOM05D005077 ORTHO05D006889 5.8e-11 70.9 81 49.4
unitig_748.g6990 Utricularia gibba HOM05D005077 ORTHO05D006889 5.8e-11 70.9 77 49.4
Migut.F00798 Erythranthe guttata HOM05D005077 ORTHO05D006889 7.6e-11 70.5 78 51.3
VMungo1383G1518 Vigna mungo HOM05D005077 ORTHO05D006889 7.6e-11 70.5 77 49.4
Gohir.A11G246900 Gossypium hirsutum HOM05D005077 ORTHO05D006889 9.9e-11 70.1 78 50.0
Hund06905 Selenicereus undatus HOM05D005077 ORTHO05D006889 1.3e-10 69.7 73 52.1
ECA238G3062 Erigeron canadensis HOM05D005077 ORTHO05D006889 1.7e-10 69.3 70 48.6
Medtr7g111650 Medicago truncatula HOM05D005077 ORTHO05D006889 1.7e-10 69.3 77 48.1
Sed0014730 Sechium edule HOM05D005077 ORTHO05D006889 1.7e-10 69.3 79 46.8
C05p62770 Brassica napus HOM05D005077 ORTHO05D006889 2.2e-10 68.9 78 47.4
BolC5t34930H Brassica oleracea HOM05D005077 ORTHO05D006889 2.9e-10 68.6 78 47.4
vmacro19987 Vaccinium macrocarpon HOM05D005077 ORTHO05D006889 2.9e-10 68.6 60 60.0
BcaC05g30195 Brassica carinata HOM05D005077 ORTHO05D006889 3.8e-10 68.2 75 49.3
A05p43000 Brassica napus HOM05D005077 ORTHO05D006889 3.8e-10 68.2 78 47.4
BraA05t23044Z Brassica rapa HOM05D005077 ORTHO05D006889 3.8e-10 68.2 78 47.4
SGA_v2.0_scaffold1G00651 Striga asiatica HOM05D005077 ORTHO05D006889 3.8e-10 68.2 69 56.5
ClCG11G010550 Citrullus lanatus HOM05D005077 ORTHO05D006889 6.4e-10 67.4 72 48.6
BcaC01g04375 Brassica carinata HOM05D005077 ORTHO05D006889 8.4e-10 67.0 79 48.1
C03p40820 Brassica napus HOM05D005077 ORTHO05D006889 8.4e-10 67.0 79 48.1
EL10Ac9g21459 Beta vulgaris HOM05D005077 ORTHO05D006889 1.4e-09 66.2 79 46.8
MBI10_g13801_MAGBIO Magnolia biondii HOM05D005077 ORTHO05D006889 1.9e-09 65.9 77 48.1
CDE07G0212 Ceratophyllum demersum HOM05D005077 ORTHO05D006889 9.3e-09 63.5 77 45.5
HPP92_014753 Vanilla planifolia HOM05D005077 ORTHO05D006889 1.3e-07 59.7 77 44.2
AUR62013106 Chenopodium quinoa HOM05D005077 ORTHO05D006889 3.0e-07 58.5 73 43.8
BcaC05g29939 Brassica carinata HOM05D005077 ORTHO05D006889 1.9e-06 55.8 73 45.2


User provided reference genes

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